Wall clock time and date at job start Tue Mar 31 2020 13:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99748 * 2 1 4 4 C 1.38183 * 120.01119 * 359.71914 * 3 2 1 5 5 C 1.39764 * 119.85813 * 179.77524 * 4 3 2 6 6 C 1.47350 * 120.06719 * 180.23128 * 5 4 3 7 7 N 1.29829 * 120.00080 * 180.29785 * 6 5 4 8 8 N 1.40103 * 120.00154 * 180.02562 * 7 6 5 9 9 C 1.34783 * 120.00071 * 179.97438 * 8 7 6 10 10 O 1.21301 * 119.99800 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99820 * 180.02562 * 9 8 7 12 12 N 1.46894 * 109.46763 * 180.02562 * 11 9 8 13 13 C 1.46907 * 111.00006 * 170.00032 * 12 11 9 14 14 C 1.46899 * 111.00104 * 293.95223 * 12 11 9 15 15 C 1.39827 * 119.86507 * 0.53152 * 5 4 3 16 16 C 1.37758 * 120.01497 * 359.71992 * 15 5 4 17 17 C 1.38964 * 120.15100 * 0.02562 * 16 15 5 18 18 O 1.35691 * 119.93877 * 179.97438 * 17 16 15 19 19 C 1.34790 * 117.00269 * 354.39156 * 18 17 16 20 20 H 1.08002 * 119.99355 * 5.05652 * 19 18 17 21 21 C 1.38626 * 120.00225 * 185.05995 * 19 18 17 22 22 N 1.31571 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99902 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47336 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46996 * 119.99993 * 23 21 19 26 26 H 1.48500 * 109.47419 * 240.00360 * 23 21 19 27 27 H 1.08992 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47269 * 59.99988 * 1 2 3 29 29 H 1.09001 * 109.46821 * 300.00488 * 1 2 3 30 30 H 1.08009 * 120.07342 * 0.02562 * 4 3 2 31 31 H 1.08010 * 120.00123 * 0.29646 * 6 5 4 32 32 H 0.97007 * 120.00086 * 359.97438 * 8 7 6 33 33 H 1.08999 * 109.46846 * 299.99833 * 11 9 8 34 34 H 1.08999 * 109.47126 * 59.99700 * 11 9 8 35 35 H 1.08995 * 109.46895 * 59.99920 * 13 12 11 36 36 H 1.08995 * 109.46740 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.46316 * 299.99881 * 13 12 11 38 38 H 1.09001 * 109.47366 * 60.00269 * 14 12 11 39 39 H 1.09001 * 109.47560 * 180.02562 * 14 12 11 40 40 H 1.08999 * 109.47395 * 300.00111 * 14 12 11 41 41 H 1.07998 * 119.98938 * 179.70652 * 15 5 4 42 42 H 1.08006 * 119.92578 * 179.97438 * 16 15 5 43 43 H 0.96996 * 119.99893 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2937 2.3704 -0.0059 5 6 1.9315 3.6140 -0.0011 6 6 1.1337 4.8528 -0.0022 7 7 1.7274 6.0074 -0.0036 8 7 0.9688 7.1853 -0.0040 9 6 1.5853 8.3839 -0.0050 10 8 2.7969 8.4427 -0.0059 11 6 0.7692 9.6509 -0.0049 12 7 1.6685 10.8124 -0.0067 13 6 0.9226 12.0554 -0.2448 14 6 2.4324 10.8886 1.2458 15 6 3.3282 3.6803 -0.0017 16 6 4.0731 2.5214 -0.0011 17 6 3.4396 1.2846 -0.0005 18 8 4.1775 0.1458 -0.0004 19 6 5.5133 0.2822 -0.1183 20 1 5.9570 1.2668 -0.1251 21 6 6.3175 -0.8414 -0.2310 22 7 5.7768 -2.0408 -0.2233 23 14 8.1686 -0.6523 -0.3951 24 1 8.5224 0.7898 -0.3777 25 1 8.8387 -1.3396 0.7379 26 1 8.6164 -1.2567 -1.6755 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2151 2.3154 -0.0100 31 1 0.0548 4.8004 -0.0018 32 1 -0.0001 7.1382 -0.0037 33 1 0.1399 9.6777 -0.8945 34 1 0.1411 9.6784 0.8855 35 1 0.1798 12.1896 0.5415 36 1 1.6122 12.8994 -0.2406 37 1 0.4223 11.9992 -1.2115 38 1 3.0298 9.9844 1.3627 39 1 3.0898 11.7577 1.2181 40 1 1.7443 10.9807 2.0861 41 1 3.8231 4.6402 -0.0028 42 1 5.1518 2.5743 -0.0019 43 1 6.3395 -2.8270 -0.3018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727649530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:32 Heat of formation + Delta-G solvation = -8.904239 kcal Electronic energy + Delta-G solvation = -25652.366481 eV Core-core repulsion = 21701.064249 eV Total energy + Delta-G solvation = -3951.302232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.87985 -39.63466 -37.61903 -37.38450 -36.58295 -35.45783 -32.63831 -32.08397 -29.73236 -29.36741 -28.19815 -27.82316 -26.57109 -25.49147 -23.49032 -22.45167 -21.66079 -20.59417 -20.25562 -18.17090 -17.83385 -17.24287 -17.07768 -16.10509 -15.87519 -15.54114 -15.20162 -15.12306 -14.91221 -14.67392 -14.60249 -13.98981 -13.87690 -13.54281 -13.42304 -13.33064 -12.92889 -12.63599 -12.40452 -12.25554 -12.03141 -11.81384 -11.75160 -11.54700 -11.41413 -11.11453 -11.00848 -10.77143 -10.50815 -10.44825 -10.11802 -9.84085 -9.48295 -9.12999 -8.74503 -8.66945 -7.93699 -6.90119 -6.54758 -4.07097 1.30546 2.17837 2.41965 2.48104 3.02197 3.12232 3.16819 3.18492 3.63766 3.90062 3.95830 4.38242 4.51265 4.69757 4.81743 4.83483 4.93081 4.97151 5.00314 5.07444 5.11681 5.28455 5.30380 5.43382 5.47054 5.51790 5.58665 5.80888 5.84192 5.87862 5.96435 6.17477 6.29108 6.47891 6.51299 6.63444 6.85029 7.02016 7.10628 7.18144 7.28962 7.52970 7.68215 7.86199 8.10365 8.48658 8.89216 9.57220 10.61339 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002406 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.944344 B =11634.104717 C =13374.404853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.134 4.134 5 C -0.143 4.143 6 C 0.147 3.853 7 N -0.262 5.262 8 N -0.590 5.590 9 C 0.526 3.474 10 O -0.488 6.488 11 C 0.042 3.958 12 N -0.530 5.530 13 C 0.025 3.975 14 C 0.016 3.984 15 C -0.040 4.040 16 C -0.225 4.225 17 C 0.151 3.849 18 O -0.151 6.151 19 C -0.389 4.389 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.848 5.848 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.274 1.274 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.377 0.623 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.021 0.979 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.494 18.440 1.174 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.060 4.060 7 N -0.068 5.068 8 N -0.332 5.332 9 C 0.312 3.688 10 O -0.359 6.359 11 C -0.091 4.091 12 N -0.254 5.254 13 C -0.123 4.123 14 C -0.132 4.132 15 C -0.061 4.061 16 C -0.245 4.245 17 C 0.094 3.906 18 O -0.051 6.051 19 C -0.465 4.465 20 H 0.116 0.884 21 C -0.166 4.166 22 N -0.481 5.481 23 Si 0.768 3.232 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.214 0.786 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.348 18.378 0.792 22.155 hybrid contribution -1.491 0.076 0.567 1.597 sum -13.839 18.453 1.359 23.106 Atomic orbital electron populations 1.22898 0.80372 1.03010 1.00246 1.86251 1.19406 1.26169 1.89796 1.17949 0.89329 0.84429 1.07712 1.20645 0.98349 0.90611 1.05972 1.17457 0.92497 0.88896 1.15913 1.24355 0.96865 0.90833 0.93975 1.75139 1.22327 0.92167 1.17121 1.46969 1.07670 1.04026 1.74577 1.20320 0.89034 0.82793 0.76684 1.90700 1.13881 1.86115 1.45160 1.21941 0.94430 0.89357 1.03351 1.61604 1.25539 1.01620 1.36653 1.22431 0.97391 0.91590 1.00853 1.22616 0.97892 1.04660 0.88040 1.20964 0.92360 0.97866 0.94893 1.20892 1.00876 0.90649 1.12102 1.18870 0.88284 0.87702 0.95786 1.84012 1.19721 1.25765 1.75620 1.21556 0.78386 0.95126 1.51390 0.88444 1.25385 1.00832 0.94177 0.96180 1.70080 1.36414 0.97751 1.43826 0.85593 0.80043 0.79164 0.78385 1.18767 1.19999 1.19976 0.89062 0.93523 0.93557 0.85969 0.87727 0.78632 0.87617 0.91691 0.95534 0.90764 0.91147 0.89103 0.91156 0.96037 0.85833 0.84457 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.27 10.28 -34.21 -0.35 -6.63 16 3 C 0.05 1.07 6.70 -39.12 -0.26 0.81 16 4 C -0.13 -2.29 8.77 -39.03 -0.34 -2.63 16 5 C -0.14 -2.47 5.87 -105.03 -0.62 -3.09 16 6 C 0.15 2.08 10.74 -14.69 -0.16 1.93 16 7 N -0.26 -4.12 10.15 32.14 0.33 -3.79 16 8 N -0.59 -7.13 6.26 31.22 0.20 -6.94 16 9 C 0.53 6.85 7.67 -10.98 -0.08 6.76 16 10 O -0.49 -8.69 14.65 5.54 0.08 -8.61 16 11 C 0.04 0.36 5.45 -4.98 -0.03 0.33 16 12 N -0.53 -5.20 4.76 -252.72 -1.20 -6.40 16 13 C 0.03 0.16 9.57 60.07 0.57 0.74 16 14 C 0.02 0.15 9.21 60.06 0.55 0.71 16 15 C -0.04 -0.78 9.57 -39.16 -0.37 -1.15 16 16 C -0.23 -4.90 9.14 -39.49 -0.36 -5.26 16 17 C 0.15 3.63 6.67 -38.83 -0.26 3.37 16 18 O -0.15 -4.27 9.53 -14.27 -0.14 -4.41 16 19 C -0.39 -10.67 9.48 30.88 0.29 -10.38 16 20 H 0.10 2.46 5.19 -52.49 -0.27 2.19 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.85 -24.45 13.67 55.48 0.76 -23.69 16 23 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 29 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 30 H 0.12 1.61 6.29 -52.48 -0.33 1.28 16 31 H 0.11 1.06 8.02 -52.48 -0.42 0.64 16 32 H 0.38 2.93 8.65 -182.59 -1.58 1.35 16 33 H 0.11 0.64 8.06 -51.93 -0.42 0.22 16 34 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 39 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.12 2.35 7.54 -52.49 -0.40 1.95 16 42 H 0.14 2.97 5.62 -52.48 -0.29 2.67 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -35.46 370.09 -6.85 -42.30 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.90 Total: 2.86 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.17 Total: -5.45 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.08 Total: -40.82 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.41 Total: -19.65 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.46 -6.85 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727649530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.400 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds