Wall clock time and date at job start Tue Mar 31 2020 13:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99748 * 2 1 4 4 C 1.38183 * 120.01119 * 359.71914 * 3 2 1 5 5 C 1.39764 * 119.85813 * 179.77524 * 4 3 2 6 6 C 1.47350 * 120.06719 * 180.23128 * 5 4 3 7 7 N 1.29829 * 120.00080 * 180.29785 * 6 5 4 8 8 N 1.40103 * 120.00154 * 180.02562 * 7 6 5 9 9 C 1.34783 * 120.00071 * 179.97438 * 8 7 6 10 10 O 1.21301 * 119.99800 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99820 * 180.02562 * 9 8 7 12 12 N 1.46894 * 109.46763 * 180.02562 * 11 9 8 13 13 C 1.46907 * 111.00006 * 170.00032 * 12 11 9 14 14 C 1.46899 * 111.00104 * 293.95223 * 12 11 9 15 15 C 1.39827 * 119.86507 * 0.53152 * 5 4 3 16 16 C 1.37758 * 120.01497 * 359.71992 * 15 5 4 17 17 C 1.38964 * 120.15100 * 0.02562 * 16 15 5 18 18 O 1.35691 * 119.93877 * 179.97438 * 17 16 15 19 19 C 1.34790 * 117.00269 * 354.39156 * 18 17 16 20 20 H 1.08002 * 119.99355 * 5.05652 * 19 18 17 21 21 C 1.38626 * 120.00225 * 185.05995 * 19 18 17 22 22 N 1.31571 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99902 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47336 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46996 * 119.99993 * 23 21 19 26 26 H 1.48500 * 109.47419 * 240.00360 * 23 21 19 27 27 H 1.08992 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47269 * 59.99988 * 1 2 3 29 29 H 1.09001 * 109.46821 * 300.00488 * 1 2 3 30 30 H 1.08009 * 120.07342 * 0.02562 * 4 3 2 31 31 H 1.08010 * 120.00123 * 0.29646 * 6 5 4 32 32 H 0.97007 * 120.00086 * 359.97438 * 8 7 6 33 33 H 1.08999 * 109.46846 * 299.99833 * 11 9 8 34 34 H 1.08999 * 109.47126 * 59.99700 * 11 9 8 35 35 H 1.08995 * 109.46895 * 59.99920 * 13 12 11 36 36 H 1.08995 * 109.46740 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.46316 * 299.99881 * 13 12 11 38 38 H 1.09001 * 109.47366 * 60.00269 * 14 12 11 39 39 H 1.09001 * 109.47560 * 180.02562 * 14 12 11 40 40 H 1.08999 * 109.47395 * 300.00111 * 14 12 11 41 41 H 1.07998 * 119.98938 * 179.70652 * 15 5 4 42 42 H 1.08006 * 119.92578 * 179.97438 * 16 15 5 43 43 H 0.96996 * 119.99893 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2937 2.3704 -0.0059 5 6 1.9315 3.6140 -0.0011 6 6 1.1337 4.8528 -0.0022 7 7 1.7274 6.0074 -0.0036 8 7 0.9688 7.1853 -0.0040 9 6 1.5853 8.3839 -0.0050 10 8 2.7969 8.4427 -0.0059 11 6 0.7692 9.6509 -0.0049 12 7 1.6685 10.8124 -0.0067 13 6 0.9226 12.0554 -0.2448 14 6 2.4324 10.8886 1.2458 15 6 3.3282 3.6803 -0.0017 16 6 4.0731 2.5214 -0.0011 17 6 3.4396 1.2846 -0.0005 18 8 4.1775 0.1458 -0.0004 19 6 5.5133 0.2822 -0.1183 20 1 5.9570 1.2668 -0.1251 21 6 6.3175 -0.8414 -0.2310 22 7 5.7768 -2.0408 -0.2233 23 14 8.1686 -0.6523 -0.3951 24 1 8.5224 0.7898 -0.3777 25 1 8.8387 -1.3396 0.7379 26 1 8.6164 -1.2567 -1.6755 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2151 2.3154 -0.0100 31 1 0.0548 4.8004 -0.0018 32 1 -0.0001 7.1382 -0.0037 33 1 0.1399 9.6777 -0.8945 34 1 0.1411 9.6784 0.8855 35 1 0.1798 12.1896 0.5415 36 1 1.6122 12.8994 -0.2406 37 1 0.4223 11.9992 -1.2115 38 1 3.0298 9.9844 1.3627 39 1 3.0898 11.7577 1.2181 40 1 1.7443 10.9807 2.0861 41 1 3.8231 4.6402 -0.0028 42 1 5.1518 2.5743 -0.0019 43 1 6.3395 -2.8270 -0.3018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727649530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:31 Heat of formation + Delta-G solvation = -36.969199 kcal Electronic energy + Delta-G solvation = -25653.583469 eV Core-core repulsion = 21701.064249 eV Total energy + Delta-G solvation = -3952.519220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27482 -40.83228 -39.26919 -38.51726 -37.65208 -36.75837 -34.39487 -33.44734 -31.26424 -30.67604 -29.15247 -28.44397 -27.79834 -27.36128 -24.73035 -23.47478 -23.17271 -21.62430 -21.54732 -19.92241 -19.27956 -18.60586 -18.12473 -17.34746 -16.88311 -16.79948 -16.61363 -16.30854 -16.10905 -15.81256 -15.55733 -15.52208 -15.35012 -15.24024 -14.97532 -14.17347 -13.96960 -13.95948 -13.50146 -13.25821 -13.06842 -13.01467 -12.84575 -12.72248 -12.71365 -12.59622 -12.41646 -12.16286 -12.01888 -11.83536 -11.44951 -11.11755 -10.88453 -10.87130 -10.14679 -9.42932 -9.32666 -8.54559 -8.47532 -6.12069 -0.06318 0.56803 1.25853 1.35914 1.45376 1.46778 1.54174 1.92022 2.16910 2.60498 2.84692 2.99938 3.14501 3.37724 3.52947 3.78122 3.96785 4.14710 4.25582 4.27767 4.31149 4.35453 4.40256 4.46928 4.50068 4.53527 4.68256 4.69777 4.71587 4.74448 4.81135 4.95715 5.05504 5.09845 5.12168 5.37586 5.50793 5.63389 5.84086 5.91326 5.97963 6.03064 6.22605 6.62555 6.68012 6.95989 7.51299 7.75163 8.74350 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002406 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.944344 B =11634.104717 C =13374.404853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.044 3.956 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.150 3.850 7 N -0.294 5.294 8 N -0.576 5.576 9 C 0.520 3.480 10 O -0.545 6.545 11 C 0.051 3.949 12 N -0.559 5.559 13 C 0.027 3.973 14 C 0.020 3.980 15 C -0.060 4.060 16 C -0.223 4.223 17 C 0.104 3.896 18 O -0.211 6.211 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.020 4.020 22 N -0.912 5.912 23 Si 1.018 2.982 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.267 1.267 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.404 0.596 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 22.154 1.074 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C -0.002 4.002 4 C -0.135 4.135 5 C -0.114 4.114 6 C -0.058 4.058 7 N -0.100 5.100 8 N -0.321 5.321 9 C 0.308 3.692 10 O -0.419 6.419 11 C -0.081 4.081 12 N -0.284 5.284 13 C -0.120 4.120 14 C -0.128 4.128 15 C -0.081 4.081 16 C -0.242 4.242 17 C 0.052 3.948 18 O -0.116 6.116 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.218 4.218 22 N -0.549 5.549 23 Si 0.837 3.163 24 H -0.177 1.177 25 H -0.192 1.192 26 H -0.192 1.192 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.194 0.806 31 H 0.180 0.820 32 H 0.245 0.755 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.465 22.167 0.694 27.622 hybrid contribution -0.704 -0.574 0.611 1.095 sum -17.169 21.593 1.305 27.618 Atomic orbital electron populations 1.23334 0.76789 1.05044 1.02537 1.86215 1.23270 1.26493 1.89817 1.18265 0.88626 0.86106 1.07153 1.21099 1.00657 0.88596 1.03125 1.17925 0.91819 0.90999 1.10656 1.24358 0.98948 0.88757 0.93757 1.74995 1.25514 0.93904 1.15545 1.46803 1.08944 1.02559 1.73753 1.21393 0.88848 0.84078 0.74882 1.90695 1.16619 1.86931 1.47623 1.22025 0.93637 0.86275 1.06181 1.61549 1.27000 1.03296 1.36571 1.22469 0.97484 0.89996 1.02038 1.22481 0.98155 1.03035 0.89113 1.21048 0.93834 0.96800 0.96402 1.20939 1.00715 0.91136 1.11440 1.19526 0.90033 0.87592 0.97686 1.83992 1.19977 1.27633 1.79975 1.21924 0.79073 0.95681 1.52331 0.88031 1.26586 1.05917 0.93587 0.95752 1.70214 1.38272 0.98667 1.47774 0.84536 0.73538 0.79552 0.78635 1.17681 1.19163 1.19194 0.87604 0.91050 0.90996 0.80585 0.82037 0.75473 0.84502 0.88629 0.93930 0.90786 0.89893 0.92614 0.90741 0.94451 0.85697 0.85725 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -14.27 10.28 -79.04 -0.81 -15.09 16 3 C 0.04 1.84 6.70 22.57 0.15 1.99 16 4 C -0.11 -3.47 8.77 22.63 0.20 -3.27 16 5 C -0.11 -3.46 5.87 -20.13 -0.12 -3.58 16 6 C 0.15 3.47 10.74 87.39 0.94 4.41 16 7 N -0.29 -8.19 10.15 -52.22 -0.53 -8.72 16 8 N -0.58 -11.44 6.26 -173.50 -1.09 -12.53 16 9 C 0.52 12.05 7.67 87.66 0.67 12.72 16 10 O -0.54 -19.02 14.65 -3.10 -0.05 -19.07 16 11 C 0.05 0.64 5.45 85.56 0.47 1.11 16 12 N -0.56 -9.39 4.76 -953.48 -4.53 -13.92 16 13 C 0.03 0.25 9.57 127.69 1.22 1.48 16 14 C 0.02 0.37 9.21 127.69 1.18 1.54 16 15 C -0.06 -2.32 9.57 22.54 0.22 -2.10 16 16 C -0.22 -10.18 9.14 22.33 0.20 -9.98 16 17 C 0.10 5.31 6.67 22.76 0.15 5.46 16 18 O -0.21 -12.96 9.53 -7.71 -0.07 -13.04 16 19 C -0.41 -24.62 9.48 67.91 0.64 -23.98 16 20 H 0.10 5.59 5.19 -2.91 -0.02 5.58 16 21 C -0.02 -1.15 5.49 84.82 0.47 -0.69 16 22 N -0.91 -56.69 13.67 21.61 0.30 -56.39 16 23 Si 1.02 43.92 29.55 68.60 2.03 45.95 16 24 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 28 H 0.07 1.40 7.65 -2.38 -0.02 1.38 16 29 H 0.07 1.40 7.67 -2.39 -0.02 1.38 16 30 H 0.18 3.45 6.29 -2.91 -0.02 3.43 16 31 H 0.16 1.94 8.02 -2.91 -0.02 1.91 16 32 H 0.40 3.89 8.65 -213.31 -1.85 2.04 16 33 H 0.14 0.90 8.06 -2.39 -0.02 0.88 16 34 H 0.10 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 37 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 38 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 39 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 40 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.13 4.76 7.54 -2.91 -0.02 4.74 16 42 H 0.13 5.85 5.62 -2.91 -0.02 5.83 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -88.82 370.09 1.94 -86.88 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.80 Total: 19.29 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 7.50 Total: -13.35 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -5.86 Total: -91.57 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.93 Total: -47.19 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -88.82 1.94 -86.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727649530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.907 kcal (2) G-P(sol) polarization free energy of solvation -88.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds