Wall clock time and date at job start Tue Mar 31 2020 12:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39591 * 120.10631 * 79.04396 * 3 2 1 5 5 C 1.37994 * 120.00825 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.22362 * 359.97438 * 5 4 3 7 7 C 1.38984 * 120.20817 * 0.02562 * 6 5 4 8 8 N 1.39694 * 120.00163 * 180.27478 * 7 6 5 9 9 C 1.46505 * 120.00226 * 179.72545 * 8 7 6 10 10 C 1.53007 * 109.47079 * 89.99691 * 9 8 7 11 11 C 1.46505 * 120.00430 * 359.72429 * 8 7 6 12 12 C 1.50702 * 109.46782 * 89.99788 * 11 8 7 13 13 C 1.38296 * 119.93116 * 269.72791 * 12 11 8 14 14 C 1.38099 * 120.06872 * 179.72589 * 13 12 11 15 15 C 1.38886 * 119.92814 * 0.57360 * 14 13 12 16 16 O 1.35748 * 120.06951 * 179.67913 * 15 14 13 17 17 C 1.34828 * 117.00031 * 174.48616 * 16 15 14 18 18 H 1.07998 * 120.00136 * 5.05985 * 17 16 15 19 19 C 1.38654 * 119.99937 * 185.05979 * 17 16 15 20 20 N 1.31560 * 119.99794 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00161 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46994 * 90.00247 * 21 19 17 23 23 H 1.48503 * 109.46998 * 210.00324 * 21 19 17 24 24 H 1.48500 * 109.46815 * 330.00032 * 21 19 17 25 25 C 1.38877 * 119.85986 * 359.70195 * 15 14 13 26 26 C 1.38094 * 119.93418 * 0.02562 * 25 15 14 27 27 C 1.38685 * 119.99332 * 0.02562 * 7 6 5 28 28 H 4.52049 * 14.03094 * 359.97438 * 4 2 1 29 29 H 1.08004 * 119.99155 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.88857 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.89373 * 179.97438 * 6 5 4 32 32 H 1.08990 * 109.47577 * 209.99820 * 9 8 7 33 33 H 1.09001 * 109.46481 * 330.00455 * 9 8 7 34 34 H 1.08999 * 109.47248 * 180.02562 * 10 9 8 35 35 H 1.09007 * 109.47172 * 300.00415 * 10 9 8 36 36 H 1.09000 * 109.46706 * 60.00449 * 10 9 8 37 37 H 1.08997 * 109.47074 * 210.00083 * 11 8 7 38 38 H 1.09001 * 109.46865 * 330.00232 * 11 8 7 39 39 H 1.08001 * 119.96894 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.03805 * 180.27322 * 14 13 12 41 41 H 0.96998 * 120.00087 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.02940 * 179.97438 * 25 15 14 43 43 H 1.08002 * 119.96673 * 179.97438 * 26 25 15 44 44 H 1.08003 * 120.10900 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 -0.2286 -1.1856 5 6 4.6863 -0.2270 -1.1834 6 6 5.3799 0.0016 -0.0098 7 6 4.6919 0.2309 1.1759 8 7 5.3973 0.4671 2.3583 9 6 4.6720 0.7147 3.6069 10 6 4.4213 -0.6140 4.3232 11 6 6.8623 0.4672 2.3499 12 6 7.3628 1.8608 2.0696 13 6 7.5906 2.2630 0.7662 14 6 8.0439 3.5412 0.5057 15 6 8.2823 4.4192 1.5551 16 8 8.7340 5.6742 1.3027 17 6 8.8357 6.5113 2.3548 18 1 8.6417 6.1493 3.3536 19 6 9.1893 7.8369 2.1543 20 7 9.2880 8.6538 3.1808 21 14 9.5256 8.4629 0.4267 22 1 8.2636 8.9681 -0.1711 23 1 10.5214 9.5631 0.4840 24 1 10.0592 7.3552 -0.4060 25 6 8.0580 4.0103 2.8632 26 6 7.5993 2.7327 3.1168 27 6 3.3051 0.2302 1.1840 28 1 -1.0500 -0.0005 -0.0001 29 1 2.7680 -0.4072 -2.1047 30 1 5.2261 -0.4041 -2.1018 31 1 6.4599 0.0013 -0.0141 32 1 5.2647 1.3669 4.2482 33 1 3.7182 1.1930 3.3843 34 1 3.8813 -0.4298 5.2519 35 1 3.8285 -1.2663 3.6818 36 1 5.3751 -1.0923 4.5457 37 1 7.2312 0.1371 3.3209 38 1 7.2212 -0.2104 1.5752 39 1 7.4101 1.5781 -0.0492 40 1 8.2174 3.8563 -0.5126 41 1 9.5357 9.5811 3.0406 42 1 8.2428 4.6907 3.6814 43 1 7.4251 2.4140 4.1339 44 1 2.7686 0.4077 2.1043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731212673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:39 Heat of formation + Delta-G solvation = 88.016854 kcal Electronic energy + Delta-G solvation = -25527.470963 eV Core-core repulsion = 21991.220809 eV Total energy + Delta-G solvation = -3536.250155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97681 -39.10137 -37.37025 -36.11751 -33.77741 -32.51499 -31.79040 -30.91548 -30.37270 -29.88792 -28.23896 -25.90319 -24.79442 -23.39771 -22.97297 -22.11411 -21.03821 -20.36977 -18.66917 -17.98945 -17.31225 -17.01397 -16.05555 -15.68578 -15.19208 -15.00622 -14.69946 -14.36385 -14.24689 -13.92789 -13.85279 -13.72541 -13.29579 -13.21843 -12.88731 -12.69583 -12.55757 -12.29372 -12.22125 -11.70962 -11.66276 -11.48208 -11.36377 -11.23419 -11.04719 -10.97610 -10.78446 -10.62656 -10.53279 -10.18554 -9.72299 -9.42689 -8.90812 -8.63104 -8.30692 -7.42978 -7.21525 -6.45817 -4.12530 0.97314 1.58202 2.06154 2.09155 2.61746 3.00986 3.18281 3.22493 3.26285 3.37873 4.04727 4.16428 4.20454 4.46557 4.78775 4.80042 4.90322 5.03197 5.07578 5.08403 5.18650 5.23207 5.30726 5.38222 5.42106 5.53557 5.54038 5.64302 5.69659 5.72284 5.75207 5.81654 6.04173 6.06927 6.07964 6.24489 6.27693 6.44057 6.51562 6.56747 6.73133 6.80432 6.98577 7.16150 7.23922 7.31048 7.40900 7.54467 7.56617 7.75322 7.99404 8.89367 9.51395 10.61720 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002948 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.022585 B = 9495.791335 C =10134.652985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C 0.046 3.954 4 C -0.160 4.160 5 C -0.072 4.072 6 C -0.187 4.187 7 C 0.229 3.771 8 N -0.616 5.616 9 C 0.116 3.884 10 C -0.170 4.170 11 C 0.177 3.823 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.193 4.193 15 C 0.163 3.837 16 O -0.216 6.216 17 C -0.390 4.390 18 H 0.106 0.894 19 C 0.064 3.936 20 N -0.879 5.879 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.223 4.223 26 C -0.059 4.059 27 C -0.177 4.177 28 H 0.222 0.778 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.280 0.720 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -19.542 -3.060 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C 0.046 3.954 4 C -0.180 4.180 5 C -0.091 4.091 6 C -0.209 4.209 7 C 0.127 3.873 8 N -0.325 5.325 9 C -0.007 4.007 10 C -0.229 4.229 11 C 0.055 3.945 12 C -0.203 4.203 13 C -0.079 4.079 14 C -0.212 4.212 15 C 0.111 3.889 16 O -0.121 6.121 17 C -0.466 4.466 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.242 4.242 26 C -0.078 4.078 27 C -0.199 4.199 28 H 0.239 0.761 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.124 0.876 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.604 -19.159 -2.990 22.101 hybrid contribution -0.060 0.637 -0.429 0.771 sum -10.664 -18.521 -3.418 21.644 Atomic orbital electron populations 1.24828 0.95737 1.00109 1.00140 1.20196 0.92179 1.00799 1.00572 1.15650 0.86004 1.00106 0.93670 1.20849 0.94084 1.06337 0.96768 1.20779 0.93586 0.97244 0.97454 1.20907 1.00125 1.08210 0.91648 1.17646 0.90507 0.92556 0.86630 1.46819 1.04646 1.75740 1.05270 1.21386 0.97384 0.96635 0.85280 1.22229 1.01960 0.98395 1.00322 1.20150 0.78595 0.93804 1.01924 1.19697 1.09745 0.97170 0.93659 1.20574 0.97118 0.94750 0.95496 1.20212 1.09348 0.94039 0.97614 1.19148 0.91352 0.85471 0.92940 1.83574 1.72952 1.18519 1.37034 1.20765 1.48434 0.90381 0.86978 0.87637 1.24474 0.95796 0.94442 0.99250 1.69644 1.45782 1.05855 1.30350 0.86181 0.78669 0.78816 0.83254 1.19836 1.20732 1.18330 1.21251 1.08421 0.97428 0.97078 1.20608 0.96822 0.92947 0.97384 1.20629 0.92115 1.09285 0.97883 0.76102 0.86399 0.85807 0.85439 0.90492 0.90943 0.91941 0.92494 0.92469 0.90675 0.90611 0.86869 0.86584 0.90995 0.85029 0.87579 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.14 -1.67 13.24 -38.84 -0.51 -2.18 16 3 C 0.05 0.59 5.72 -107.03 -0.61 -0.02 16 4 C -0.16 -1.87 9.75 -39.17 -0.38 -2.26 16 5 C -0.07 -0.79 10.02 -39.67 -0.40 -1.19 16 6 C -0.19 -2.23 8.47 -39.31 -0.33 -2.56 16 7 C 0.23 2.91 6.55 -83.83 -0.55 2.36 16 8 N -0.62 -7.35 2.59 -173.15 -0.45 -7.80 16 9 C 0.12 1.22 5.87 -4.04 -0.02 1.20 16 10 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 11 C 0.18 2.10 5.35 -5.19 -0.03 2.08 16 12 C -0.20 -3.08 5.47 -104.58 -0.57 -3.65 16 13 C -0.06 -0.99 9.32 -39.61 -0.37 -1.36 16 14 C -0.19 -3.77 9.99 -39.39 -0.39 -4.16 16 15 C 0.16 3.72 6.65 -39.10 -0.26 3.46 16 16 O -0.22 -5.67 8.59 0.06 0.00 -5.67 16 17 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 18 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 19 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 20 N -0.88 -25.26 13.96 55.48 0.77 -24.49 16 21 Si 0.91 21.62 28.62 -169.99 -4.86 16.75 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.22 -4.67 9.17 -39.40 -0.36 -5.03 16 26 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 27 C -0.18 -2.24 8.90 -38.98 -0.35 -2.59 16 28 H 0.22 1.23 7.80 -54.09 -0.42 0.81 16 29 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.40 4.33 -52.49 -0.23 1.17 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.40 16 33 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 38 H 0.08 0.81 6.14 -51.93 -0.32 0.49 16 39 H 0.11 1.55 5.82 -52.49 -0.31 1.25 16 40 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.12 1.46 6.14 -52.48 -0.32 1.14 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.40 372.73 -8.72 -39.12 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.43 Total: 5.08 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -4.37 Total: -28.60 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.33 Total: -32.29 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 0.00 Total: -5.67 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.40 -8.72 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.135 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds