Wall clock time and date at job start Tue Mar 31 2020 12:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39591 * 120.10631 * 79.04396 * 3 2 1 5 5 C 1.37994 * 120.00825 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.22362 * 359.97438 * 5 4 3 7 7 C 1.38984 * 120.20817 * 0.02562 * 6 5 4 8 8 N 1.39694 * 120.00163 * 180.27478 * 7 6 5 9 9 C 1.46505 * 120.00226 * 179.72545 * 8 7 6 10 10 C 1.53007 * 109.47079 * 89.99691 * 9 8 7 11 11 C 1.46505 * 120.00430 * 359.72429 * 8 7 6 12 12 C 1.50702 * 109.46782 * 89.99788 * 11 8 7 13 13 C 1.38296 * 119.93116 * 269.72791 * 12 11 8 14 14 C 1.38099 * 120.06872 * 179.72589 * 13 12 11 15 15 C 1.38886 * 119.92814 * 0.57360 * 14 13 12 16 16 O 1.35748 * 120.06951 * 179.67913 * 15 14 13 17 17 C 1.34828 * 117.00031 * 174.48616 * 16 15 14 18 18 H 1.07998 * 120.00136 * 5.05985 * 17 16 15 19 19 C 1.38654 * 119.99937 * 185.05979 * 17 16 15 20 20 N 1.31560 * 119.99794 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00161 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46994 * 90.00247 * 21 19 17 23 23 H 1.48503 * 109.46998 * 210.00324 * 21 19 17 24 24 H 1.48500 * 109.46815 * 330.00032 * 21 19 17 25 25 C 1.38877 * 119.85986 * 359.70195 * 15 14 13 26 26 C 1.38094 * 119.93418 * 0.02562 * 25 15 14 27 27 C 1.38685 * 119.99332 * 0.02562 * 7 6 5 28 28 H 4.52049 * 14.03094 * 359.97438 * 4 2 1 29 29 H 1.08004 * 119.99155 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.88857 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.89373 * 179.97438 * 6 5 4 32 32 H 1.08990 * 109.47577 * 209.99820 * 9 8 7 33 33 H 1.09001 * 109.46481 * 330.00455 * 9 8 7 34 34 H 1.08999 * 109.47248 * 180.02562 * 10 9 8 35 35 H 1.09007 * 109.47172 * 300.00415 * 10 9 8 36 36 H 1.09000 * 109.46706 * 60.00449 * 10 9 8 37 37 H 1.08997 * 109.47074 * 210.00083 * 11 8 7 38 38 H 1.09001 * 109.46865 * 330.00232 * 11 8 7 39 39 H 1.08001 * 119.96894 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.03805 * 180.27322 * 14 13 12 41 41 H 0.96998 * 120.00087 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.02940 * 179.97438 * 25 15 14 43 43 H 1.08002 * 119.96673 * 179.97438 * 26 25 15 44 44 H 1.08003 * 120.10900 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 -0.2286 -1.1856 5 6 4.6863 -0.2270 -1.1834 6 6 5.3799 0.0016 -0.0098 7 6 4.6919 0.2309 1.1759 8 7 5.3973 0.4671 2.3583 9 6 4.6720 0.7147 3.6069 10 6 4.4213 -0.6140 4.3232 11 6 6.8623 0.4672 2.3499 12 6 7.3628 1.8608 2.0696 13 6 7.5906 2.2630 0.7662 14 6 8.0439 3.5412 0.5057 15 6 8.2823 4.4192 1.5551 16 8 8.7340 5.6742 1.3027 17 6 8.8357 6.5113 2.3548 18 1 8.6417 6.1493 3.3536 19 6 9.1893 7.8369 2.1543 20 7 9.2880 8.6538 3.1808 21 14 9.5256 8.4629 0.4267 22 1 8.2636 8.9681 -0.1711 23 1 10.5214 9.5631 0.4840 24 1 10.0592 7.3552 -0.4060 25 6 8.0580 4.0103 2.8632 26 6 7.5993 2.7327 3.1168 27 6 3.3051 0.2302 1.1840 28 1 -1.0500 -0.0005 -0.0001 29 1 2.7680 -0.4072 -2.1047 30 1 5.2261 -0.4041 -2.1018 31 1 6.4599 0.0013 -0.0141 32 1 5.2647 1.3669 4.2482 33 1 3.7182 1.1930 3.3843 34 1 3.8813 -0.4298 5.2519 35 1 3.8285 -1.2663 3.6818 36 1 5.3751 -1.0923 4.5457 37 1 7.2312 0.1371 3.3209 38 1 7.2212 -0.2104 1.5752 39 1 7.4101 1.5781 -0.0492 40 1 8.2174 3.8563 -0.5126 41 1 9.5357 9.5811 3.0406 42 1 8.2428 4.6907 3.6814 43 1 7.4251 2.4140 4.1339 44 1 2.7686 0.4077 2.1043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731212673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:36 Heat of formation + Delta-G solvation = 74.056428 kcal Electronic energy + Delta-G solvation = -25528.076333 eV Core-core repulsion = 21991.220809 eV Total energy + Delta-G solvation = -3536.855524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.13056 -40.50690 -38.71196 -37.30086 -34.59024 -34.50300 -32.89034 -32.00011 -31.68282 -30.91271 -29.36048 -27.51358 -26.14821 -24.35929 -23.86880 -23.62880 -22.25504 -21.47167 -19.84867 -19.56140 -19.08213 -17.88770 -16.96810 -16.74485 -16.65749 -16.27176 -15.85679 -15.69755 -15.58955 -15.44110 -15.16153 -14.79888 -14.43896 -14.34599 -14.19351 -14.07005 -13.98048 -13.62419 -13.17283 -12.98900 -12.76991 -12.63921 -12.59034 -12.44147 -12.28144 -12.14950 -12.00278 -11.94383 -11.71908 -11.39134 -11.24400 -10.91773 -10.63256 -9.80793 -9.50127 -9.04330 -8.52111 -8.16519 -6.24536 0.10193 0.56166 0.57038 0.71752 1.29659 1.33554 1.50070 1.79886 2.16313 2.26158 2.26877 2.79642 3.06327 3.16312 3.18180 3.42770 3.91667 3.97389 4.01446 4.13672 4.17466 4.28772 4.32125 4.40108 4.42929 4.54418 4.56940 4.63105 4.73540 4.76197 4.82203 4.88108 4.96892 4.98757 5.02893 5.23256 5.26855 5.34183 5.35932 5.38191 5.56844 5.57764 5.69029 5.72967 5.79121 5.89782 5.96213 6.23333 6.41014 6.60358 6.62822 6.82504 7.57409 8.59591 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002948 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.022585 B = 9495.791335 C =10134.652985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.195 4.195 3 C 0.032 3.968 4 C -0.170 4.170 5 C -0.071 4.071 6 C -0.197 4.197 7 C 0.216 3.784 8 N -0.619 5.619 9 C 0.112 3.888 10 C -0.160 4.160 11 C 0.178 3.822 12 C -0.171 4.171 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.121 3.879 16 O -0.246 6.246 17 C -0.399 4.399 18 H 0.081 0.919 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.266 1.266 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.058 4.058 27 C -0.191 4.191 28 H 0.260 0.740 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.285 0.715 42 H 0.106 0.894 43 H 0.135 0.865 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 -22.520 -4.526 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.195 4.195 3 C 0.031 3.969 4 C -0.190 4.190 5 C -0.089 4.089 6 C -0.219 4.219 7 C 0.114 3.886 8 N -0.328 5.328 9 C -0.011 4.011 10 C -0.219 4.219 11 C 0.056 3.944 12 C -0.173 4.173 13 C -0.073 4.073 14 C -0.214 4.214 15 C 0.072 3.928 16 O -0.154 6.154 17 C -0.475 4.475 18 H 0.098 0.902 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.191 1.191 24 H -0.187 1.187 25 C -0.258 4.258 26 C -0.076 4.076 27 C -0.213 4.213 28 H 0.276 0.724 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.167 0.833 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.153 0.847 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.836 -22.189 -4.454 25.540 hybrid contribution 0.063 1.175 0.048 1.178 sum -11.773 -21.014 -4.406 24.487 Atomic orbital electron populations 1.25770 0.96532 0.97522 0.97762 1.20607 0.92926 1.03067 1.02868 1.15931 0.86830 1.00032 0.94094 1.21109 0.94709 1.06244 0.96970 1.21102 0.93443 0.96073 0.98293 1.21110 1.00748 1.08405 0.91606 1.17819 0.90635 0.92997 0.87160 1.46794 1.04503 1.75919 1.05541 1.21485 0.96998 0.97649 0.84922 1.22126 1.02257 0.97086 1.00405 1.20263 0.78694 0.91354 1.04105 1.20255 1.05788 0.98521 0.92743 1.21020 0.95328 0.93844 0.97120 1.20521 1.08886 0.94732 0.97289 1.19700 0.93360 0.85055 0.94678 1.83516 1.75914 1.19873 1.36089 1.20700 1.48697 0.91263 0.86833 0.90154 1.25273 0.95891 0.94526 1.03134 1.69727 1.48053 1.06420 1.32235 0.85232 0.78908 0.78276 0.78396 1.19236 1.19082 1.18672 1.21272 1.09668 0.98944 0.95939 1.20922 0.95660 0.91413 0.99632 1.20723 0.92468 1.10025 0.98087 0.72436 0.85301 0.83252 0.84221 0.90515 0.91592 0.90711 0.93213 0.91932 0.88437 0.88437 0.83284 0.85743 0.90561 0.87623 0.84672 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 19.25 74.32 1.43 -1.30 16 2 C -0.19 -4.50 13.24 30.02 0.40 -4.10 16 3 C 0.03 0.78 5.72 -21.43 -0.12 0.66 16 4 C -0.17 -3.69 9.75 22.54 0.22 -3.47 16 5 C -0.07 -1.36 10.02 22.21 0.22 -1.14 16 6 C -0.20 -4.06 8.47 22.45 0.19 -3.87 16 7 C 0.22 4.99 6.55 38.17 0.25 5.24 16 8 N -0.62 -12.97 2.59 -701.74 -1.82 -14.79 16 9 C 0.11 2.11 5.87 86.38 0.51 2.62 16 10 C -0.16 -2.38 10.24 71.98 0.74 -1.65 16 11 C 0.18 3.49 5.35 85.63 0.46 3.95 16 12 C -0.17 -4.73 5.47 -19.83 -0.11 -4.84 16 13 C -0.05 -1.63 9.32 22.25 0.21 -1.42 16 14 C -0.20 -7.44 9.99 22.39 0.22 -7.22 16 15 C 0.12 5.67 6.65 22.58 0.15 5.82 16 16 O -0.25 -13.51 8.59 -22.70 -0.19 -13.71 16 17 C -0.40 -23.67 9.95 67.92 0.68 -23.00 16 18 H 0.08 4.99 5.44 -2.91 -0.02 4.98 16 19 C 0.01 0.59 5.49 84.83 0.47 1.05 16 20 N -0.92 -55.53 13.96 21.61 0.30 -55.23 16 21 Si 0.97 45.86 28.62 68.60 1.96 47.83 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 25 C -0.24 -10.35 9.17 22.39 0.21 -10.15 16 26 C -0.06 -1.88 9.69 22.25 0.22 -1.67 16 27 C -0.19 -4.64 8.90 22.66 0.20 -4.43 16 28 H 0.26 1.90 7.80 -4.42 -0.03 1.87 16 29 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 31 H 0.14 2.43 4.33 -2.91 -0.01 2.42 16 32 H 0.08 1.44 8.07 -2.39 -0.02 1.42 16 33 H 0.07 1.33 6.20 -2.39 -0.01 1.31 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 1.58 8.01 -2.39 -0.02 1.56 16 38 H 0.10 1.58 6.14 -2.39 -0.01 1.57 16 39 H 0.15 3.39 5.82 -2.91 -0.02 3.38 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.11 5.08 5.64 -2.91 -0.02 5.07 16 43 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 44 H 0.12 2.85 6.14 -2.91 -0.02 2.84 16 Total: -1.00 -70.56 372.73 7.80 -62.77 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 1.02 Total: 22.04 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 6.53 Total: -48.90 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.52 Total: -70.02 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.19 Total: -13.71 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.96 Total: 47.83 kcal Total: -70.56 7.80 -62.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731212673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.823 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds