Wall clock time and date at job start Tue Mar 31 2020 13:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 120.00149 * 2 1 4 4 O 1.21277 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00127 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47020 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46969 * 180.02562 * 6 5 3 8 8 C 1.46494 * 120.00087 * 269.99950 * 7 6 5 9 9 C 1.34784 * 119.99728 * 89.99952 * 7 6 5 10 10 O 1.21581 * 119.99971 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99771 * 180.02562 * 9 7 6 12 12 C 1.39945 * 120.00303 * 174.69267 * 11 9 7 13 13 C 1.38962 * 120.03076 * 326.34202 * 12 11 9 14 14 C 1.38160 * 120.06637 * 180.02562 * 13 12 11 15 15 C 1.38167 * 120.13414 * 359.71878 * 14 13 12 16 16 C 1.38903 * 120.07541 * 0.55828 * 15 14 13 17 17 O 1.35748 * 120.03979 * 179.71538 * 16 15 14 18 18 C 1.34825 * 117.00174 * 173.81949 * 17 16 15 19 19 H 1.07998 * 120.00242 * 354.59912 * 18 17 16 20 20 C 1.38651 * 119.99955 * 174.59544 * 18 17 16 21 21 N 1.31559 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00306 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46655 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47074 * 120.00034 * 22 20 18 25 25 H 1.48496 * 109.47068 * 240.00338 * 22 20 18 26 26 C 1.38700 * 120.03782 * 146.36633 * 12 11 9 27 27 H 1.09005 * 109.47360 * 300.00063 * 1 2 3 28 28 H 1.09002 * 109.47111 * 59.99565 * 1 2 3 29 29 H 1.09001 * 109.47082 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00027 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46793 * 60.00155 * 5 3 2 32 32 H 1.09002 * 109.47213 * 300.00507 * 5 3 2 33 33 H 1.08992 * 109.47424 * 60.00145 * 6 5 3 34 34 H 1.09004 * 109.46765 * 299.99866 * 6 5 3 35 35 H 1.08998 * 109.47348 * 270.00371 * 8 7 6 36 36 H 1.09003 * 109.46954 * 30.00146 * 8 7 6 37 37 H 1.09007 * 109.47372 * 149.99881 * 8 7 6 38 38 H 0.97006 * 120.00159 * 354.68564 * 11 9 7 39 39 H 1.08001 * 119.96171 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.92710 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.95750 * 180.27523 * 15 14 13 42 42 H 0.96993 * 120.00379 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.07244 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6098 0.0011 7 7 5.6209 2.6097 0.0011 8 6 6.3534 2.6093 1.2697 9 6 6.2947 2.6101 -1.1663 10 8 5.6867 2.6110 -2.2191 11 7 7.6424 2.6096 -1.1663 12 6 8.3421 2.4979 -2.3731 13 6 7.8223 1.7328 -3.4102 14 6 8.5127 1.6216 -4.6017 15 6 9.7187 2.2751 -4.7682 16 6 10.2464 3.0367 -3.7334 17 8 11.4341 3.6737 -3.8958 18 6 11.8275 4.4976 -2.9036 19 1 11.1678 4.6941 -2.0714 20 6 13.0790 5.0924 -2.9517 21 7 13.8824 4.8534 -3.9657 22 14 13.6244 6.2333 -1.5768 23 1 12.5459 6.3352 -0.5611 24 1 14.8523 5.6912 -0.9416 25 1 13.9087 7.5799 -2.1344 26 6 9.5553 3.1504 -2.5352 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9499 -0.8400 -0.0004 31 1 4.0095 0.6532 -0.8892 32 1 4.0089 0.6535 0.8908 33 1 3.7922 3.1234 0.8910 34 1 3.7928 3.1237 -0.8890 35 1 6.5351 3.6368 1.5848 36 1 5.7643 2.0951 2.0292 37 1 7.3059 2.0954 1.1392 38 1 8.1276 2.6867 -0.3298 39 1 6.8777 1.2246 -3.2845 40 1 8.1065 1.0267 -5.4063 41 1 10.2538 2.1898 -5.7025 42 1 14.7581 5.2692 -3.9991 43 1 9.9614 3.7456 -1.7308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732420176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:33 Heat of formation + Delta-G solvation = -52.385274 kcal Electronic energy + Delta-G solvation = -26205.753551 eV Core-core repulsion = 22252.565840 eV Total energy + Delta-G solvation = -3953.187711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65460 -39.88226 -38.79286 -36.80120 -35.65871 -34.94199 -34.33235 -32.25322 -31.77882 -29.27506 -28.47887 -27.69913 -26.57314 -25.30110 -24.09170 -21.79353 -21.65585 -20.73295 -19.69006 -18.50279 -17.90236 -17.66605 -17.22650 -16.39239 -15.97183 -15.88648 -15.57166 -15.04145 -14.90500 -14.45970 -14.24707 -14.05842 -13.83839 -13.57381 -13.56022 -13.34060 -12.96157 -12.89011 -12.75204 -12.55335 -12.46070 -12.29533 -11.72935 -11.55826 -11.31269 -11.11182 -11.02514 -10.70771 -10.42528 -10.28065 -10.01094 -9.61749 -9.52450 -9.46293 -8.89604 -8.79031 -7.68589 -7.11732 -6.43877 -4.03347 2.06712 2.31915 2.39437 2.49559 2.94374 3.11372 3.12702 3.18234 3.29841 3.88563 3.96761 4.44960 4.61957 4.67327 4.71944 4.79270 4.89129 5.10205 5.11900 5.14547 5.19819 5.30023 5.38609 5.39605 5.48159 5.69957 5.80700 5.99728 6.02876 6.10580 6.16962 6.28099 6.36671 6.57009 6.79323 7.02985 7.05800 7.11822 7.23669 7.35331 7.45016 7.84572 7.86170 7.94329 8.00980 8.60742 9.01760 9.72844 10.74338 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.002429 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.787089 B =11524.718653 C =12508.988722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.739 5.739 3 C 0.518 3.482 4 O -0.538 6.538 5 C -0.158 4.158 6 C 0.151 3.849 7 N -0.635 5.635 8 C 0.075 3.925 9 C 0.703 3.297 10 O -0.566 6.566 11 N -0.681 5.681 12 C 0.198 3.802 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.390 4.390 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.258 4.258 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.403 0.597 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.250 -10.812 13.094 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.391 5.391 3 C 0.305 3.695 4 O -0.415 6.415 5 C -0.200 4.200 6 C 0.027 3.973 7 N -0.373 5.373 8 C -0.069 4.069 9 C 0.405 3.595 10 O -0.441 6.441 11 N -0.329 5.329 12 C 0.104 3.896 13 C -0.225 4.225 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.280 4.280 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.236 0.764 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.239 0.761 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.779 -9.963 12.114 25.243 hybrid contribution 0.754 0.121 1.339 1.542 sum -19.024 -9.842 13.453 25.294 Atomic orbital electron populations 1.21538 0.79613 1.02195 1.02413 1.45842 1.07864 1.08865 1.76525 1.20620 0.90050 0.83574 0.75304 1.90727 1.70605 1.31206 1.48927 1.22071 0.91615 1.01250 1.05034 1.20984 0.77215 0.94321 1.04820 1.47059 1.06474 1.78898 1.04867 1.21791 0.97117 1.02208 0.85743 1.15865 0.81715 0.77962 0.83915 1.90953 1.67400 1.56270 1.29498 1.42754 1.04637 1.76286 1.09236 1.17196 0.91519 0.95670 0.85215 1.20546 1.02196 1.05270 0.94532 1.20520 0.93608 0.97725 0.96315 1.20235 0.98251 1.04685 0.99008 1.19066 0.86748 0.90705 0.91984 1.84017 1.29445 1.51564 1.43018 1.21307 1.00915 1.22361 1.02076 0.89242 1.25274 0.94875 0.98199 0.98208 1.70044 1.08789 1.41816 1.29109 0.85664 0.78893 0.79303 0.79636 1.19230 1.20192 1.20160 1.20781 0.98316 1.08606 1.00262 0.92233 0.92142 0.90686 0.76383 0.88074 0.88813 0.89720 0.88713 0.92234 0.90674 0.91214 0.76148 0.86312 0.86672 0.86420 0.92104 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.84 0.64 1.13 16 2 N -0.74 -4.83 5.71 -67.08 -0.38 -5.21 16 3 C 0.52 5.00 7.83 -10.98 -0.09 4.92 16 4 O -0.54 -7.35 15.98 5.56 0.09 -7.26 16 5 C -0.16 -1.31 6.02 -27.88 -0.17 -1.48 16 6 C 0.15 1.59 4.70 -4.04 -0.02 1.57 16 7 N -0.64 -7.05 2.87 -187.35 -0.54 -7.59 16 8 C 0.07 0.54 10.16 59.84 0.61 1.15 16 9 C 0.70 10.89 8.01 -86.91 -0.70 10.19 16 10 O -0.57 -10.87 13.63 5.29 0.07 -10.80 16 11 N -0.68 -10.55 5.17 -14.24 -0.07 -10.62 16 12 C 0.20 3.83 6.27 -83.71 -0.52 3.31 16 13 C -0.20 -3.96 8.65 -39.34 -0.34 -4.31 16 14 C -0.06 -1.20 10.03 -39.64 -0.40 -1.59 16 15 C -0.20 -4.37 9.99 -39.36 -0.39 -4.76 16 16 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 17 O -0.18 -5.04 9.76 0.07 0.00 -5.04 16 18 C -0.39 -10.82 9.44 30.88 0.29 -10.53 16 19 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 22 Si 0.94 20.35 29.55 -169.99 -5.02 15.32 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.26 -5.62 9.04 -39.21 -0.35 -5.97 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.40 1.46 8.83 -40.82 -0.36 1.10 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.09 1.30 7.38 -51.93 -0.38 0.91 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.36 8.07 -51.93 -0.42 -0.05 16 37 H 0.07 0.46 6.45 -51.93 -0.33 0.12 16 38 H 0.40 4.96 6.63 -40.82 -0.27 4.69 16 39 H 0.12 2.25 6.43 -52.49 -0.34 1.91 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 2.75 5.71 -52.49 -0.30 2.45 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -36.62 366.76 -6.99 -43.61 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.62 Total: 8.06 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.80 Total: -1.55 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.24 Total: -47.86 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.16 Total: -23.10 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.62 -6.99 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732420176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.776 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds