Wall clock time and date at job start Tue Mar 31 2020 13:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 120.00149 * 2 1 4 4 O 1.21277 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00127 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47020 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46969 * 180.02562 * 6 5 3 8 8 C 1.46494 * 120.00087 * 269.99950 * 7 6 5 9 9 C 1.34784 * 119.99728 * 89.99952 * 7 6 5 10 10 O 1.21581 * 119.99971 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99771 * 180.02562 * 9 7 6 12 12 C 1.39945 * 120.00303 * 174.69267 * 11 9 7 13 13 C 1.38962 * 120.03076 * 326.34202 * 12 11 9 14 14 C 1.38160 * 120.06637 * 180.02562 * 13 12 11 15 15 C 1.38167 * 120.13414 * 359.71878 * 14 13 12 16 16 C 1.38903 * 120.07541 * 0.55828 * 15 14 13 17 17 O 1.35748 * 120.03979 * 179.71538 * 16 15 14 18 18 C 1.34825 * 117.00174 * 173.81949 * 17 16 15 19 19 H 1.07998 * 120.00242 * 354.59912 * 18 17 16 20 20 C 1.38651 * 119.99955 * 174.59544 * 18 17 16 21 21 N 1.31559 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00306 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46655 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47074 * 120.00034 * 22 20 18 25 25 H 1.48496 * 109.47068 * 240.00338 * 22 20 18 26 26 C 1.38700 * 120.03782 * 146.36633 * 12 11 9 27 27 H 1.09005 * 109.47360 * 300.00063 * 1 2 3 28 28 H 1.09002 * 109.47111 * 59.99565 * 1 2 3 29 29 H 1.09001 * 109.47082 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00027 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46793 * 60.00155 * 5 3 2 32 32 H 1.09002 * 109.47213 * 300.00507 * 5 3 2 33 33 H 1.08992 * 109.47424 * 60.00145 * 6 5 3 34 34 H 1.09004 * 109.46765 * 299.99866 * 6 5 3 35 35 H 1.08998 * 109.47348 * 270.00371 * 8 7 6 36 36 H 1.09003 * 109.46954 * 30.00146 * 8 7 6 37 37 H 1.09007 * 109.47372 * 149.99881 * 8 7 6 38 38 H 0.97006 * 120.00159 * 354.68564 * 11 9 7 39 39 H 1.08001 * 119.96171 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.92710 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.95750 * 180.27523 * 15 14 13 42 42 H 0.96993 * 120.00379 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.07244 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6098 0.0011 7 7 5.6209 2.6097 0.0011 8 6 6.3534 2.6093 1.2697 9 6 6.2947 2.6101 -1.1663 10 8 5.6867 2.6110 -2.2191 11 7 7.6424 2.6096 -1.1663 12 6 8.3421 2.4979 -2.3731 13 6 7.8223 1.7328 -3.4102 14 6 8.5127 1.6216 -4.6017 15 6 9.7187 2.2751 -4.7682 16 6 10.2464 3.0367 -3.7334 17 8 11.4341 3.6737 -3.8958 18 6 11.8275 4.4976 -2.9036 19 1 11.1678 4.6941 -2.0714 20 6 13.0790 5.0924 -2.9517 21 7 13.8824 4.8534 -3.9657 22 14 13.6244 6.2333 -1.5768 23 1 12.5459 6.3352 -0.5611 24 1 14.8523 5.6912 -0.9416 25 1 13.9087 7.5799 -2.1344 26 6 9.5553 3.1504 -2.5352 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9499 -0.8400 -0.0004 31 1 4.0095 0.6532 -0.8892 32 1 4.0089 0.6535 0.8908 33 1 3.7922 3.1234 0.8910 34 1 3.7928 3.1237 -0.8890 35 1 6.5351 3.6368 1.5848 36 1 5.7643 2.0951 2.0292 37 1 7.3059 2.0954 1.1392 38 1 8.1276 2.6867 -0.3298 39 1 6.8777 1.2246 -3.2845 40 1 8.1065 1.0267 -5.4063 41 1 10.2538 2.1898 -5.7025 42 1 14.7581 5.2692 -3.9991 43 1 9.9614 3.7456 -1.7308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732420176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:32 Heat of formation + Delta-G solvation = -79.734578 kcal Electronic energy + Delta-G solvation = -26206.939506 eV Core-core repulsion = 22252.565840 eV Total energy + Delta-G solvation = -3954.373666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87143 -40.78496 -40.40071 -38.37587 -36.81509 -35.77403 -35.59820 -34.21956 -32.66534 -30.87974 -30.07503 -28.34160 -27.45307 -27.15285 -25.03972 -23.48446 -23.03211 -21.49848 -21.01949 -19.83451 -19.53109 -18.78704 -18.40444 -17.37237 -17.11556 -16.81348 -16.72647 -16.49505 -16.29714 -15.93756 -15.63142 -15.50217 -15.22351 -14.65490 -14.58061 -14.46555 -14.22314 -14.06974 -13.60677 -13.54860 -13.33575 -13.26330 -13.11984 -13.01322 -12.74737 -12.66504 -12.36954 -12.09418 -12.07636 -11.51377 -11.28547 -11.13643 -11.04404 -10.71679 -10.14336 -9.83977 -9.30384 -8.81987 -8.44910 -6.13379 0.46315 0.72703 1.36869 1.41731 1.45913 1.55053 1.59291 1.98773 2.18978 2.33763 2.85268 2.86850 3.19777 3.51594 3.78696 3.96112 4.02642 4.13685 4.24909 4.35485 4.46102 4.46877 4.52672 4.58365 4.62155 4.65302 4.72173 4.78159 4.89097 4.94737 4.97621 5.04603 5.13006 5.29128 5.43285 5.48355 5.52050 5.69548 5.70054 5.85312 6.03716 6.22176 6.51230 6.78441 6.99604 7.22641 7.39719 7.79727 8.78317 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.002429 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.787089 B =11524.718653 C =12508.988722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.514 3.486 4 O -0.586 6.586 5 C -0.146 4.146 6 C 0.150 3.850 7 N -0.622 5.622 8 C 0.065 3.935 9 C 0.699 3.301 10 O -0.608 6.608 11 N -0.672 5.672 12 C 0.205 3.795 13 C -0.198 4.198 14 C -0.051 4.051 15 C -0.215 4.215 16 C 0.135 3.865 17 O -0.226 6.226 18 C -0.410 4.410 19 H 0.102 0.898 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.267 1.267 25 H -0.272 1.272 26 C -0.261 4.261 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.419 0.581 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.418 0.582 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.906 -12.190 15.892 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.377 5.377 3 C 0.301 3.699 4 O -0.467 6.467 5 C -0.187 4.187 6 C 0.026 3.974 7 N -0.358 5.358 8 C -0.077 4.077 9 C 0.401 3.599 10 O -0.487 6.487 11 N -0.322 5.322 12 C 0.110 3.890 13 C -0.219 4.219 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.084 3.916 17 O -0.133 6.133 18 C -0.486 4.486 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.838 3.162 23 H -0.173 1.173 24 H -0.192 1.192 25 H -0.198 1.198 26 C -0.283 4.283 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.256 0.744 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.257 0.743 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.489 -11.416 14.987 28.578 hybrid contribution 0.962 0.369 0.481 1.137 sum -20.527 -11.047 15.469 27.977 Atomic orbital electron populations 1.21663 0.78995 1.04178 1.01328 1.45786 1.08393 1.08790 1.74751 1.20881 0.90638 0.83652 0.74752 1.90711 1.71524 1.32996 1.51452 1.21951 0.90614 0.99718 1.06399 1.21000 0.76701 0.95892 1.03810 1.47072 1.06691 1.77155 1.04885 1.22135 0.97731 1.03469 0.84330 1.16035 0.81385 0.77779 0.84657 1.90923 1.68073 1.58172 1.31514 1.42597 1.04846 1.76103 1.08650 1.17203 0.90716 0.94404 0.86694 1.20856 1.02193 1.04338 0.94472 1.20910 0.92113 0.96655 0.97260 1.20467 0.99353 1.05004 0.98700 1.19583 0.86389 0.91768 0.93873 1.83983 1.31620 1.53400 1.44267 1.21809 1.01629 1.22845 1.02357 0.88112 1.26584 0.94581 0.99855 1.01060 1.70189 1.09561 1.44130 1.31880 0.84531 0.78893 0.76521 0.76268 1.17262 1.19216 1.19763 1.20792 0.99103 1.08914 0.99514 0.92867 0.93747 0.87164 0.74427 0.88715 0.85185 0.88051 0.92475 0.91445 0.87394 0.90297 0.74252 0.85187 0.82871 0.86293 0.91869 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.70 127.77 1.37 2.16 16 2 N -0.73 -7.84 5.71 -484.52 -2.77 -10.61 16 3 C 0.51 9.13 7.83 87.65 0.69 9.81 16 4 O -0.59 -15.87 15.98 -3.02 -0.05 -15.92 16 5 C -0.15 -2.04 6.02 29.85 0.18 -1.86 16 6 C 0.15 2.91 4.70 86.38 0.41 3.32 16 7 N -0.62 -12.23 2.87 -864.91 -2.49 -14.71 16 8 C 0.06 0.68 10.16 127.77 1.30 1.98 16 9 C 0.70 20.41 8.01 179.05 1.43 21.84 16 10 O -0.61 -22.81 13.63 -3.97 -0.05 -22.86 16 11 N -0.67 -19.51 5.17 -317.24 -1.64 -21.15 16 12 C 0.21 7.71 6.27 38.13 0.24 7.95 16 13 C -0.20 -7.32 8.65 22.42 0.19 -7.12 16 14 C -0.05 -1.86 10.03 22.23 0.22 -1.63 16 15 C -0.22 -9.41 9.99 22.41 0.22 -9.19 16 16 C 0.14 6.78 6.64 22.56 0.15 6.93 16 17 O -0.23 -13.53 9.76 -22.66 -0.22 -13.75 16 18 C -0.41 -23.53 9.44 67.92 0.64 -22.89 16 19 H 0.10 5.28 5.30 -2.91 -0.02 5.26 16 20 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 21 N -0.92 -55.96 13.67 21.61 0.30 -55.67 16 22 Si 1.02 42.07 29.55 68.60 2.03 44.10 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 C -0.26 -11.44 9.04 22.51 0.20 -11.23 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.42 1.71 8.83 -92.71 -0.82 0.90 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.65 8.03 -2.39 -0.02 1.63 16 34 H 0.06 1.57 7.38 -2.39 -0.02 1.56 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.49 8.07 -2.39 -0.02 0.47 16 37 H 0.08 0.72 6.45 -2.38 -0.02 0.71 16 38 H 0.42 9.28 6.63 -92.70 -0.61 8.67 16 39 H 0.13 4.63 6.43 -2.91 -0.02 4.61 16 40 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 Total: -1.00 -85.10 366.76 2.45 -82.65 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.37 Total: 28.70 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 7.71 Total: -0.78 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -6.60 Total: -102.13 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.32 Total: -52.54 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -85.10 2.45 -82.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732420176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.919 kcal (2) G-P(sol) polarization free energy of solvation -85.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds