Wall clock time and date at job start Tue Mar 31 2020 13:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99805 * 2 1 4 4 O 1.21607 * 120.00070 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99950 * 179.97438 * 3 2 1 6 6 N 1.40106 * 119.99756 * 0.02562 * 5 3 2 7 7 C 1.29760 * 119.99618 * 180.02562 * 6 5 3 8 8 C 1.47444 * 119.99622 * 180.02562 * 7 6 5 9 9 C 1.39705 * 120.08532 * 359.97438 * 8 7 6 10 10 C 1.37907 * 119.99311 * 180.02562 * 9 8 7 11 11 C 1.38724 * 120.15512 * 359.97438 * 10 9 8 12 12 O 1.35937 * 119.91372 * 180.02562 * 11 10 9 13 13 C 1.42897 * 117.00223 * 0.02562 * 12 11 10 14 14 C 1.39302 * 120.16570 * 0.02562 * 11 10 9 15 15 O 1.36004 * 119.99449 * 179.97438 * 14 11 10 16 16 C 1.42903 * 116.99787 * 180.02562 * 15 14 11 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.38235 * 120.01136 * 0.26063 * 14 11 10 27 27 H 1.09004 * 109.47361 * 59.99676 * 1 2 3 28 28 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47478 * 299.99896 * 1 2 3 30 30 H 0.96998 * 119.99852 * 180.02562 * 2 1 3 31 31 H 0.96996 * 120.00206 * 180.02562 * 5 3 2 32 32 H 1.07996 * 120.00194 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.00635 * 359.97438 * 9 8 7 34 34 H 1.07994 * 119.91848 * 179.97438 * 10 9 8 35 35 H 1.09007 * 109.47293 * 299.99701 * 13 12 11 36 36 H 1.08994 * 109.47501 * 60.00190 * 13 12 11 37 37 H 1.09005 * 109.47195 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 39 39 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 40 40 H 1.09001 * 109.47194 * 299.99575 * 17 16 15 41 41 H 1.08992 * 109.47399 * 59.99748 * 17 16 15 42 42 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.08325 * 179.72921 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2203 0.0005 5 7 3.4866 1.1672 0.0005 6 7 4.1871 -0.0461 0.0005 7 6 5.4847 -0.0461 0.0015 8 6 6.2219 -1.3230 0.0010 9 6 5.5251 -2.5339 -0.0001 10 6 6.2166 -3.7271 -0.0001 11 6 7.6038 -3.7286 0.0004 12 8 8.2804 -4.9077 -0.0001 13 6 7.4990 -6.1041 -0.0018 14 6 8.3051 -2.5250 0.0015 15 8 9.6652 -2.5306 0.0025 16 6 10.3191 -1.2600 0.0042 17 6 11.8351 -1.4667 0.0045 18 6 12.5247 -0.1267 0.0069 19 1 11.9402 0.7814 0.0076 20 6 13.9019 -0.0603 0.0081 21 7 14.6137 -1.1661 0.0078 22 14 14.7568 1.6007 0.0104 23 1 14.3598 2.3600 1.2233 24 1 16.2282 1.4000 0.0121 25 1 14.3619 2.3622 -1.2017 26 6 7.6190 -1.3250 0.0075 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.9715 2.0072 0.0009 32 1 6.0246 0.8892 0.0019 33 1 4.4451 -2.5356 -0.0001 34 1 5.6767 -4.6624 -0.0005 35 1 6.8695 -6.1282 0.8878 36 1 6.8709 -6.1266 -0.8922 37 1 8.1608 -6.9703 -0.0016 38 1 10.0278 -0.7026 0.8944 39 1 10.0292 -0.7010 -0.8855 40 1 12.1253 -2.0259 0.8941 41 1 12.1260 -2.0240 -0.8858 42 1 15.5825 -1.1194 0.0090 43 1 8.1616 -0.3912 0.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747356674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:47 Heat of formation + Delta-G solvation = -41.104970 kcal Electronic energy + Delta-G solvation = -25524.543471 eV Core-core repulsion = 21571.844910 eV Total energy + Delta-G solvation = -3952.698560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47878 -40.18113 -38.30879 -37.68502 -36.28658 -34.82773 -33.42672 -32.57417 -30.73728 -30.16335 -29.13028 -27.33977 -26.68574 -25.12743 -23.92544 -22.55831 -21.33882 -20.77245 -20.59527 -18.87463 -18.46291 -17.77692 -17.01416 -16.29662 -15.97481 -15.90512 -15.89786 -15.34725 -15.08257 -14.99597 -14.66637 -14.59133 -14.47771 -14.00265 -13.80598 -13.12271 -12.81320 -12.59442 -12.52814 -12.35217 -12.22926 -11.96255 -11.59491 -11.28479 -11.17198 -10.94847 -10.90536 -10.81527 -10.65969 -10.59253 -9.91682 -9.69032 -9.62501 -9.32981 -9.29578 -8.54130 -8.45365 -7.57299 -6.11227 -4.16233 0.60967 1.37451 2.11610 2.13970 2.95524 3.20684 3.26835 3.27449 3.32171 3.33377 3.68468 3.77551 4.38426 4.40038 4.67782 4.82453 4.89545 5.02130 5.07621 5.07949 5.19046 5.21284 5.25042 5.33748 5.41875 5.42656 5.48459 5.63228 5.94638 5.98778 6.10700 6.13098 6.16262 6.33051 6.43216 6.57229 6.66480 6.98324 7.18708 7.51017 7.63523 7.75838 7.78900 8.02330 8.21834 8.25949 8.89192 9.48028 11.00133 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.002569 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.955430 B =10896.925927 C =13421.829564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.734 5.734 3 C 0.731 3.269 4 O -0.587 6.587 5 N -0.589 5.589 6 N -0.267 5.267 7 C 0.143 3.857 8 C -0.063 4.063 9 C -0.083 4.083 10 C -0.184 4.184 11 C 0.113 3.887 12 O -0.299 6.299 13 C 0.026 3.974 14 C 0.116 3.884 15 O -0.302 6.302 16 C 0.062 3.938 17 C 0.026 3.974 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.147 4.147 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.410 0.590 31 H 0.401 0.599 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.835 -5.755 -0.018 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.389 5.389 3 C 0.431 3.569 4 O -0.462 6.462 5 N -0.336 5.336 6 N -0.076 5.076 7 C -0.067 4.067 8 C -0.066 4.066 9 C -0.104 4.104 10 C -0.203 4.203 11 C 0.066 3.934 12 O -0.211 6.211 13 C -0.069 4.069 14 C 0.069 3.931 15 O -0.215 6.215 16 C -0.011 4.011 17 C -0.011 4.011 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.168 4.168 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.245 0.755 31 H 0.242 0.758 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.848 -5.763 -0.018 25.507 hybrid contribution 1.365 1.582 0.001 2.090 sum -23.482 -4.181 -0.017 23.852 Atomic orbital electron populations 1.21465 0.78189 1.02251 1.02285 1.44862 1.07561 1.07782 1.78741 1.15455 0.79755 0.84546 0.77113 1.91010 1.65730 1.30916 1.58562 1.46320 1.05007 1.05160 1.77116 1.74287 1.10203 1.07812 1.15308 1.24293 0.90181 0.97888 0.94312 1.17891 0.91610 0.90594 1.06536 1.20889 0.99881 0.90443 0.99157 1.20945 0.91647 0.99530 1.08140 1.18562 0.89994 0.84715 1.00154 1.86256 1.34692 1.11936 1.88261 1.23079 0.97100 0.85783 1.00985 1.18241 0.84847 0.90684 0.99354 1.86319 1.13318 1.34629 1.87249 1.23383 0.96622 0.81561 0.99583 1.19108 0.84987 0.98022 0.98995 1.20921 0.91443 0.91724 1.52477 0.92427 1.24987 0.97464 0.96792 0.94926 1.69962 1.06281 1.26892 1.49488 0.86560 0.78425 0.83754 0.78694 1.20110 1.21134 1.20106 1.21197 0.93279 0.97546 1.04806 0.92295 0.90416 0.92286 0.75470 0.75779 0.85894 0.85006 0.84698 0.92781 0.92774 0.88208 0.93045 0.93049 0.95333 0.95331 0.92638 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.70 59.85 0.64 1.33 16 2 N -0.73 -6.56 5.68 -72.07 -0.41 -6.96 16 3 C 0.73 8.68 8.68 -86.92 -0.75 7.93 16 4 O -0.59 -8.94 17.18 5.27 0.09 -8.85 16 5 N -0.59 -6.00 6.27 27.64 0.17 -5.83 16 6 N -0.27 -2.58 9.46 32.15 0.30 -2.27 16 7 C 0.14 1.35 10.75 -14.68 -0.16 1.19 16 8 C -0.06 -0.70 5.87 -105.05 -0.62 -1.32 16 9 C -0.08 -0.85 9.57 -39.15 -0.37 -1.22 16 10 C -0.18 -1.97 9.02 -39.52 -0.36 -2.32 16 11 C 0.11 1.60 6.70 -39.01 -0.26 1.34 16 12 O -0.30 -4.34 10.27 -34.24 -0.35 -4.70 16 13 C 0.03 0.23 9.81 101.05 0.99 1.22 16 14 C 0.12 1.86 6.69 -39.19 -0.26 1.60 16 15 O -0.30 -5.98 9.91 -34.45 -0.34 -6.32 16 16 C 0.06 1.26 4.68 37.16 0.17 1.44 16 17 C 0.03 0.66 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 22 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.15 -1.94 8.77 -39.03 -0.34 -2.28 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.41 3.09 7.87 -40.82 -0.32 2.77 16 31 H 0.40 3.56 8.75 -182.60 -1.60 1.96 16 32 H 0.12 0.91 8.02 -52.49 -0.42 0.49 16 33 H 0.13 1.09 7.54 -52.48 -0.40 0.69 16 34 H 0.14 1.05 6.27 -52.49 -0.33 0.72 16 35 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 36 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.96 7.65 -51.93 -0.40 0.57 16 39 H 0.05 0.96 7.67 -51.93 -0.40 0.57 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 1.77 6.29 -52.49 -0.33 1.44 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -34.10 374.33 -8.12 -42.22 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.06 Total: 0.13 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.88 Total: -3.62 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.80 Total: -40.40 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.60 Total: -19.86 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.10 -8.12 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747356674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.118 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds