Wall clock time and date at job start Tue Mar 31 2020 13:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99805 * 2 1 4 4 O 1.21607 * 120.00070 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99950 * 179.97438 * 3 2 1 6 6 N 1.40106 * 119.99756 * 0.02562 * 5 3 2 7 7 C 1.29760 * 119.99618 * 180.02562 * 6 5 3 8 8 C 1.47444 * 119.99622 * 180.02562 * 7 6 5 9 9 C 1.39705 * 120.08532 * 359.97438 * 8 7 6 10 10 C 1.37907 * 119.99311 * 180.02562 * 9 8 7 11 11 C 1.38724 * 120.15512 * 359.97438 * 10 9 8 12 12 O 1.35937 * 119.91372 * 180.02562 * 11 10 9 13 13 C 1.42897 * 117.00223 * 0.02562 * 12 11 10 14 14 C 1.39302 * 120.16570 * 0.02562 * 11 10 9 15 15 O 1.36004 * 119.99449 * 179.97438 * 14 11 10 16 16 C 1.42903 * 116.99787 * 180.02562 * 15 14 11 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.38235 * 120.01136 * 0.26063 * 14 11 10 27 27 H 1.09004 * 109.47361 * 59.99676 * 1 2 3 28 28 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47478 * 299.99896 * 1 2 3 30 30 H 0.96998 * 119.99852 * 180.02562 * 2 1 3 31 31 H 0.96996 * 120.00206 * 180.02562 * 5 3 2 32 32 H 1.07996 * 120.00194 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.00635 * 359.97438 * 9 8 7 34 34 H 1.07994 * 119.91848 * 179.97438 * 10 9 8 35 35 H 1.09007 * 109.47293 * 299.99701 * 13 12 11 36 36 H 1.08994 * 109.47501 * 60.00190 * 13 12 11 37 37 H 1.09005 * 109.47195 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 39 39 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 40 40 H 1.09001 * 109.47194 * 299.99575 * 17 16 15 41 41 H 1.08992 * 109.47399 * 59.99748 * 17 16 15 42 42 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.08325 * 179.72921 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2203 0.0005 5 7 3.4866 1.1672 0.0005 6 7 4.1871 -0.0461 0.0005 7 6 5.4847 -0.0461 0.0015 8 6 6.2219 -1.3230 0.0010 9 6 5.5251 -2.5339 -0.0001 10 6 6.2166 -3.7271 -0.0001 11 6 7.6038 -3.7286 0.0004 12 8 8.2804 -4.9077 -0.0001 13 6 7.4990 -6.1041 -0.0018 14 6 8.3051 -2.5250 0.0015 15 8 9.6652 -2.5306 0.0025 16 6 10.3191 -1.2600 0.0042 17 6 11.8351 -1.4667 0.0045 18 6 12.5247 -0.1267 0.0069 19 1 11.9402 0.7814 0.0076 20 6 13.9019 -0.0603 0.0081 21 7 14.6137 -1.1661 0.0078 22 14 14.7568 1.6007 0.0104 23 1 14.3598 2.3600 1.2233 24 1 16.2282 1.4000 0.0121 25 1 14.3619 2.3622 -1.2017 26 6 7.6190 -1.3250 0.0075 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.9715 2.0072 0.0009 32 1 6.0246 0.8892 0.0019 33 1 4.4451 -2.5356 -0.0001 34 1 5.6767 -4.6624 -0.0005 35 1 6.8695 -6.1282 0.8878 36 1 6.8709 -6.1266 -0.8922 37 1 8.1608 -6.9703 -0.0016 38 1 10.0278 -0.7026 0.8944 39 1 10.0292 -0.7010 -0.8855 40 1 12.1253 -2.0259 0.8941 41 1 12.1260 -2.0240 -0.8858 42 1 15.5825 -1.1194 0.0090 43 1 8.1616 -0.3912 0.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747356674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:47 Heat of formation + Delta-G solvation = -65.332508 kcal Electronic energy + Delta-G solvation = -25525.594055 eV Core-core repulsion = 21571.844910 eV Total energy + Delta-G solvation = -3953.749145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49655 -41.04710 -39.46400 -38.64743 -37.22213 -35.60433 -35.43001 -33.47494 -32.36242 -31.22284 -30.24577 -28.09774 -27.34006 -26.94477 -24.79519 -23.94110 -22.42165 -21.92002 -21.62447 -19.70481 -19.50251 -18.71077 -18.44860 -17.68429 -17.12073 -17.10851 -16.73805 -16.51706 -16.30255 -16.16986 -15.84640 -15.58964 -15.28756 -15.05722 -14.52923 -14.28989 -14.16639 -13.95194 -13.64957 -13.29345 -13.10067 -13.01718 -12.99370 -12.62063 -12.60540 -12.36336 -12.08792 -11.99519 -11.77367 -11.56379 -11.56056 -11.44756 -11.35182 -10.58257 -10.48116 -10.03579 -9.50910 -8.59609 -8.23094 -6.36495 -0.26563 0.41771 1.24631 1.35576 1.42984 1.46658 1.54411 2.08769 2.29399 2.41334 2.50500 2.55903 2.84303 3.11314 3.65586 3.82179 4.06744 4.10628 4.27588 4.30020 4.35227 4.42513 4.46843 4.47860 4.49107 4.65500 4.68729 4.74734 4.80172 4.82720 4.94988 5.18789 5.28134 5.37430 5.40711 5.44788 5.52702 5.67168 5.68275 5.75632 6.09113 6.21215 6.27047 6.72817 6.79152 7.03299 7.33467 7.44395 8.89740 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.002569 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.955430 B =10896.925927 C =13421.829564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.725 5.725 3 C 0.723 3.277 4 O -0.627 6.627 5 N -0.586 5.586 6 N -0.264 5.264 7 C 0.145 3.855 8 C -0.062 4.062 9 C -0.071 4.071 10 C -0.172 4.172 11 C 0.098 3.902 12 O -0.338 6.338 13 C 0.016 3.984 14 C 0.069 3.931 15 O -0.334 6.334 16 C 0.082 3.918 17 C 0.028 3.972 18 C -0.543 4.543 19 H 0.074 0.926 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.974 3.026 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.263 1.263 26 C -0.144 4.144 27 H 0.051 0.949 28 H 0.114 0.886 29 H 0.051 0.949 30 H 0.418 0.582 31 H 0.406 0.594 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.065 0.935 40 H -0.005 1.005 41 H -0.005 1.005 42 H 0.266 0.734 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.320 -5.194 -0.018 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.380 5.380 3 C 0.423 3.577 4 O -0.506 6.506 5 N -0.333 5.333 6 N -0.073 5.073 7 C -0.065 4.065 8 C -0.065 4.065 9 C -0.091 4.091 10 C -0.190 4.190 11 C 0.051 3.949 12 O -0.252 6.252 13 C -0.078 4.078 14 C 0.024 3.976 15 O -0.249 6.249 16 C 0.008 3.992 17 C -0.010 4.010 18 C -0.580 4.580 19 H 0.092 0.908 20 C -0.199 4.199 21 N -0.571 5.571 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.188 1.188 26 C -0.165 4.165 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.070 0.930 30 H 0.255 0.745 31 H 0.248 0.752 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.074 0.926 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.365 -5.242 -0.018 27.863 hybrid contribution 1.982 1.254 0.001 2.346 sum -25.383 -3.988 -0.017 25.694 Atomic orbital electron populations 1.21654 0.76934 1.04437 1.01580 1.44916 1.08431 1.07206 1.77436 1.15690 0.80129 0.84765 0.77108 1.90979 1.66611 1.32476 1.60505 1.46248 1.04704 1.05641 1.76683 1.74249 1.10277 1.07467 1.15260 1.24313 0.90263 0.98024 0.93892 1.17977 0.90777 0.91812 1.05921 1.21289 1.01193 0.89810 0.96807 1.21287 0.90112 1.01282 1.06329 1.18858 0.91218 0.84220 1.00621 1.86202 1.37073 1.13378 1.88513 1.23400 0.97580 0.84056 1.02781 1.18657 0.83199 0.92794 1.03000 1.86213 1.16056 1.33866 1.88798 1.22895 0.93185 0.82370 1.00796 1.18947 0.89283 0.96938 0.95788 1.21386 0.92116 0.92689 1.51856 0.90776 1.26046 0.98461 1.01020 0.94345 1.70122 1.06601 1.29634 1.50742 0.85363 0.76848 0.78565 0.79435 1.18805 1.21092 1.18796 1.21262 0.94299 0.96740 1.04168 0.93021 0.86792 0.93012 0.74484 0.75205 0.83841 0.82233 0.81366 0.90866 0.90861 0.87326 0.91713 0.91726 0.98635 0.98629 0.92571 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 10.70 127.77 1.37 2.47 16 2 N -0.72 -11.23 5.68 -500.17 -2.84 -14.07 16 3 C 0.72 16.03 8.68 179.06 1.55 17.58 16 4 O -0.63 -18.73 17.18 -4.05 -0.07 -18.80 16 5 N -0.59 -10.70 6.27 -184.73 -1.16 -11.85 16 6 N -0.26 -4.28 9.46 -52.19 -0.49 -4.77 16 7 C 0.15 2.30 10.75 87.43 0.94 3.24 16 8 C -0.06 -1.21 5.87 -20.14 -0.12 -1.33 16 9 C -0.07 -1.19 9.57 22.55 0.22 -0.98 16 10 C -0.17 -3.19 9.02 22.31 0.20 -2.99 16 11 C 0.10 2.72 6.70 22.64 0.15 2.87 16 12 O -0.34 -9.89 10.27 -78.80 -0.81 -10.70 16 13 C 0.02 0.26 9.81 113.37 1.11 1.37 16 14 C 0.07 2.24 6.69 22.53 0.15 2.39 16 15 O -0.33 -13.90 9.91 -79.55 -0.79 -14.69 16 16 C 0.08 3.41 4.68 71.98 0.34 3.74 16 17 C 0.03 1.49 5.34 29.85 0.16 1.65 16 18 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 19 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 20 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 21 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 22 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 26 C -0.14 -3.65 8.77 22.63 0.20 -3.45 16 27 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.42 4.94 7.87 -92.71 -0.73 4.21 16 31 H 0.41 6.47 8.75 -213.32 -1.87 4.61 16 32 H 0.14 1.70 8.02 -2.91 -0.02 1.68 16 33 H 0.16 1.84 7.54 -2.91 -0.02 1.82 16 34 H 0.17 1.91 6.27 -2.91 -0.02 1.90 16 35 H 0.07 0.87 7.65 -2.38 -0.02 0.85 16 36 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 37 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 39 H 0.06 2.46 7.67 -2.39 -0.02 2.44 16 40 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.15 3.50 6.29 -2.91 -0.02 3.48 16 Total: -1.00 -77.89 374.33 1.58 -76.32 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.54 Total: 12.58 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.96 Total: -2.73 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -4.21 Total: -86.94 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.67 Total: -44.19 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -77.89 1.58 -76.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747356674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.984 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds