Wall clock time and date at job start Tue Mar 31 2020 12:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47359 * 2 1 4 4 C 1.46498 * 120.00118 * 277.55463 * 3 2 1 5 5 C 1.50702 * 109.47020 * 270.00211 * 4 3 2 6 6 H 1.07994 * 119.99868 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99847 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00252 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47226 * 119.99306 * 9 7 5 12 12 H 1.48496 * 109.47144 * 239.99811 * 9 7 5 13 13 C 1.34771 * 119.99965 * 97.55196 * 3 2 1 14 14 O 1.21551 * 120.00151 * 185.76549 * 13 3 2 15 15 C 1.47867 * 119.99951 * 5.76461 * 13 3 2 16 16 C 1.39658 * 120.02978 * 134.31089 * 15 13 3 17 17 C 1.38043 * 119.95551 * 179.72464 * 16 15 13 18 18 C 1.38068 * 120.23484 * 359.97438 * 17 16 15 19 19 C 1.39332 * 120.52280 * 0.02562 * 18 17 16 20 20 C 1.39277 * 120.03149 * 314.03556 * 15 13 3 21 21 C 1.48435 * 109.43610 * 179.97438 * 19 18 17 22 22 C 1.39606 * 131.16613 * 180.02562 * 21 19 18 23 23 C 1.37928 * 119.95728 * 180.02562 * 22 21 19 24 24 C 1.38340 * 120.25258 * 359.95030 * 23 22 21 25 25 C 1.38342 * 120.09535 * 0.02766 * 24 23 22 26 26 C 1.37907 * 120.04320 * 359.97438 * 25 24 23 27 27 C 1.50889 * 132.16418 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47047 * 309.46518 * 1 2 3 29 29 H 1.08991 * 109.46830 * 69.46474 * 1 2 3 30 30 H 1.08997 * 109.47070 * 189.46415 * 1 2 3 31 31 H 1.09005 * 109.46611 * 239.99807 * 2 1 3 32 32 H 1.08994 * 109.46944 * 120.00357 * 2 1 3 33 33 H 1.09003 * 109.47268 * 29.99754 * 4 3 2 34 34 H 1.09001 * 109.47271 * 149.99800 * 4 3 2 35 35 H 0.96998 * 120.00182 * 180.02562 * 8 7 5 36 36 H 1.08003 * 120.02319 * 359.74068 * 16 15 13 37 37 H 1.07992 * 119.88489 * 179.97438 * 17 16 15 38 38 H 1.08003 * 120.07588 * 0.24711 * 20 15 13 39 39 H 1.08005 * 120.02262 * 0.02562 * 22 21 19 40 40 H 1.08004 * 119.87032 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.95340 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.98088 * 180.02562 * 25 24 23 43 43 H 1.09000 * 110.13535 * 60.84862 * 27 26 25 44 44 H 1.09003 * 110.13535 * 299.14818 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1054 2.1274 -1.2577 5 6 3.4631 1.9137 -1.8757 6 1 4.1887 1.2852 -1.3810 7 6 3.7793 2.5213 -3.0724 8 7 2.8957 3.2870 -3.6746 9 14 5.4624 2.2570 -3.8381 10 1 6.2664 1.3605 -2.9691 11 1 5.3047 1.6369 -5.1782 12 1 6.1544 3.5636 -3.9755 13 6 2.3877 1.9653 1.1570 14 8 2.6929 3.1418 1.1736 15 6 2.4216 1.1751 2.4064 16 6 3.5179 1.2733 3.2660 17 6 3.5453 0.5392 4.4347 18 6 2.4918 -0.2926 4.7582 19 6 1.3907 -0.4019 3.9114 20 6 1.3576 0.3365 2.7298 21 6 0.4130 -1.3552 4.4932 22 6 -0.8286 -1.7950 4.0305 23 6 -1.5577 -2.7020 4.7710 24 6 -1.0631 -3.1794 5.9715 25 6 0.1666 -2.7482 6.4357 26 6 0.9024 -1.8415 5.7019 27 6 2.2465 -1.1985 5.9405 28 1 -0.3633 0.6532 0.7934 29 1 -0.3633 0.3605 -0.9623 30 1 -0.3633 -1.0137 0.1690 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3346 1.7751 -1.9432 34 1 1.9588 3.1894 -1.0609 35 1 3.1179 3.7142 -4.5166 36 1 4.3435 1.9233 3.0167 37 1 4.3938 0.6157 5.0984 38 1 0.5085 0.2592 2.0669 39 1 -1.2179 -1.4253 3.0934 40 1 -2.5183 -3.0409 4.4119 41 1 -1.6379 -3.8897 6.5472 42 1 0.5512 -3.1224 7.3730 43 1 3.0227 -1.9616 5.9971 44 1 2.2252 -0.6152 6.8611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752815213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:37 Heat of formation + Delta-G solvation = 27.924911 kcal Electronic energy + Delta-G solvation = -26136.198204 eV Core-core repulsion = 22597.342267 eV Total energy + Delta-G solvation = -3538.855937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.98277 -39.41300 -37.74105 -35.44496 -34.48486 -32.85288 -32.01253 -30.81699 -30.11163 -28.90584 -27.81112 -26.62572 -23.90345 -23.37627 -23.01095 -21.62328 -21.32274 -20.94546 -18.77711 -17.02077 -16.53338 -16.39784 -16.32161 -15.45658 -15.24691 -15.16628 -14.93062 -14.52654 -14.34954 -14.00228 -13.74522 -13.62919 -13.22845 -12.94196 -12.80485 -12.52002 -12.43700 -12.14919 -11.98876 -11.82462 -11.74245 -11.51613 -11.22260 -11.07520 -10.97784 -10.78507 -10.64729 -10.57574 -10.14577 -9.79539 -9.63384 -9.13113 -9.02398 -8.59339 -8.44095 -8.12101 -7.68721 -6.05303 -4.10176 0.54803 1.14611 1.15605 1.79267 3.21486 3.29372 3.36912 3.40811 3.58344 3.84220 4.01958 4.08082 4.34012 4.43894 4.57522 4.72277 4.78557 4.92232 4.97986 5.15033 5.24221 5.27589 5.29488 5.34182 5.34595 5.43121 5.49277 5.59895 5.69359 5.72485 5.75324 5.81462 5.95550 6.01687 6.13746 6.23758 6.26619 6.28963 6.37176 6.44842 6.52812 6.58513 6.73920 6.86168 7.07581 7.43987 7.52291 7.91361 8.22119 8.37208 8.87119 9.03766 9.55002 11.02836 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003130 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.094589 B = 8943.863899 C = 9670.039939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 N -0.588 5.588 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.548 3.452 14 O -0.535 6.535 15 C -0.112 4.112 16 C -0.062 4.062 17 C -0.108 4.108 18 C -0.081 4.081 19 C -0.072 4.072 20 C -0.078 4.078 21 C -0.047 4.047 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.103 4.103 26 C -0.094 4.094 27 C -0.042 4.042 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 -14.401 19.832 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.028 4.028 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.334 3.666 14 O -0.413 6.413 15 C -0.115 4.115 16 C -0.080 4.080 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.073 4.073 20 C -0.096 4.096 21 C -0.047 4.047 22 C -0.115 4.115 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.094 4.094 27 C -0.078 4.078 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.624 -13.654 19.623 24.807 hybrid contribution 0.842 -0.152 -0.653 1.076 sum -5.782 -13.807 18.970 24.164 Atomic orbital electron populations 1.22351 0.96808 1.01357 1.02724 1.21663 0.93584 0.84389 1.03174 1.48186 1.61827 1.13340 1.08469 1.19323 0.97103 0.92839 0.78132 1.21479 0.99482 1.29876 1.05798 0.92349 1.24936 0.97367 0.94882 0.96900 1.69945 1.34478 1.31376 1.17490 0.86439 0.84012 0.78059 0.78909 1.19774 1.20943 1.20852 1.18166 0.78422 0.86894 0.83094 1.90759 1.49051 1.15643 1.85882 1.20107 0.95917 0.98625 0.96873 1.21221 0.97448 0.97005 0.92349 1.20286 0.97976 0.97053 0.97321 1.20385 0.94532 0.97115 0.96116 1.19106 0.94764 0.98143 0.95242 1.21580 0.98799 0.93690 0.95493 1.19244 0.93963 0.96459 0.95038 1.20928 0.93358 0.97213 1.00006 1.21015 0.99973 0.97634 0.95179 1.21112 0.95778 1.00200 0.96529 1.20364 0.94639 0.97351 0.99723 1.20302 0.96363 0.97378 0.95338 1.19526 0.94257 0.97048 0.96965 0.92487 0.91534 0.91916 0.90059 0.90720 0.94777 0.93614 0.92746 0.84620 0.85324 0.84033 0.85805 0.85689 0.85739 0.85912 0.88216 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.15 37.16 0.34 -2.08 16 2 C 0.10 1.62 5.59 -4.04 -0.02 1.60 16 3 N -0.59 -12.80 2.46 -176.17 -0.43 -13.23 16 4 C 0.24 6.45 5.22 -5.19 -0.03 6.43 16 5 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.55 12.07 7.26 -12.32 -0.09 11.98 16 14 O -0.54 -14.00 16.54 5.32 0.09 -13.91 16 15 C -0.11 -1.96 5.07 -105.04 -0.53 -2.49 16 16 C -0.06 -0.95 9.69 -39.12 -0.38 -1.33 16 17 C -0.11 -1.34 10.02 -39.72 -0.40 -1.74 16 18 C -0.08 -0.99 6.31 -104.15 -0.66 -1.65 16 19 C -0.07 -0.98 6.19 -104.87 -0.65 -1.62 16 20 C -0.08 -1.16 7.47 -38.77 -0.29 -1.45 16 21 C -0.05 -0.56 6.20 -104.84 -0.65 -1.21 16 22 C -0.10 -1.02 10.09 -39.18 -0.40 -1.41 16 23 C -0.12 -1.04 10.02 -39.66 -0.40 -1.44 16 24 C -0.12 -0.95 10.05 -39.51 -0.40 -1.35 16 25 C -0.10 -0.88 10.03 -39.66 -0.40 -1.28 16 26 C -0.09 -0.97 6.30 -104.30 -0.66 -1.63 16 27 C -0.04 -0.39 6.71 -28.81 -0.19 -0.58 16 28 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.07 1.15 5.11 -51.93 -0.27 0.88 16 33 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 2.10 8.06 -52.48 -0.42 1.67 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.14 1.98 3.71 -52.48 -0.19 1.78 16 39 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -33.94 365.09 -11.12 -45.07 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.78 Total: 0.50 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -6.21 Total: -14.95 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.30 Total: -39.10 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.94 -11.12 -45.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752815213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.992 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds