Wall clock time and date at job start Tue Mar 31 2020 12:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47359 * 2 1 4 4 C 1.46498 * 120.00118 * 277.55463 * 3 2 1 5 5 C 1.50702 * 109.47020 * 270.00211 * 4 3 2 6 6 H 1.07994 * 119.99868 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99847 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00252 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47226 * 119.99306 * 9 7 5 12 12 H 1.48496 * 109.47144 * 239.99811 * 9 7 5 13 13 C 1.34771 * 119.99965 * 97.55196 * 3 2 1 14 14 O 1.21551 * 120.00151 * 185.76549 * 13 3 2 15 15 C 1.47867 * 119.99951 * 5.76461 * 13 3 2 16 16 C 1.39658 * 120.02978 * 134.31089 * 15 13 3 17 17 C 1.38043 * 119.95551 * 179.72464 * 16 15 13 18 18 C 1.38068 * 120.23484 * 359.97438 * 17 16 15 19 19 C 1.39332 * 120.52280 * 0.02562 * 18 17 16 20 20 C 1.39277 * 120.03149 * 314.03556 * 15 13 3 21 21 C 1.48435 * 109.43610 * 179.97438 * 19 18 17 22 22 C 1.39606 * 131.16613 * 180.02562 * 21 19 18 23 23 C 1.37928 * 119.95728 * 180.02562 * 22 21 19 24 24 C 1.38340 * 120.25258 * 359.95030 * 23 22 21 25 25 C 1.38342 * 120.09535 * 0.02766 * 24 23 22 26 26 C 1.37907 * 120.04320 * 359.97438 * 25 24 23 27 27 C 1.50889 * 132.16418 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47047 * 309.46518 * 1 2 3 29 29 H 1.08991 * 109.46830 * 69.46474 * 1 2 3 30 30 H 1.08997 * 109.47070 * 189.46415 * 1 2 3 31 31 H 1.09005 * 109.46611 * 239.99807 * 2 1 3 32 32 H 1.08994 * 109.46944 * 120.00357 * 2 1 3 33 33 H 1.09003 * 109.47268 * 29.99754 * 4 3 2 34 34 H 1.09001 * 109.47271 * 149.99800 * 4 3 2 35 35 H 0.96998 * 120.00182 * 180.02562 * 8 7 5 36 36 H 1.08003 * 120.02319 * 359.74068 * 16 15 13 37 37 H 1.07992 * 119.88489 * 179.97438 * 17 16 15 38 38 H 1.08003 * 120.07588 * 0.24711 * 20 15 13 39 39 H 1.08005 * 120.02262 * 0.02562 * 22 21 19 40 40 H 1.08004 * 119.87032 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.95340 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.98088 * 180.02562 * 25 24 23 43 43 H 1.09000 * 110.13535 * 60.84862 * 27 26 25 44 44 H 1.09003 * 110.13535 * 299.14818 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1054 2.1274 -1.2577 5 6 3.4631 1.9137 -1.8757 6 1 4.1887 1.2852 -1.3810 7 6 3.7793 2.5213 -3.0724 8 7 2.8957 3.2870 -3.6746 9 14 5.4624 2.2570 -3.8381 10 1 6.2664 1.3605 -2.9691 11 1 5.3047 1.6369 -5.1782 12 1 6.1544 3.5636 -3.9755 13 6 2.3877 1.9653 1.1570 14 8 2.6929 3.1418 1.1736 15 6 2.4216 1.1751 2.4064 16 6 3.5179 1.2733 3.2660 17 6 3.5453 0.5392 4.4347 18 6 2.4918 -0.2926 4.7582 19 6 1.3907 -0.4019 3.9114 20 6 1.3576 0.3365 2.7298 21 6 0.4130 -1.3552 4.4932 22 6 -0.8286 -1.7950 4.0305 23 6 -1.5577 -2.7020 4.7710 24 6 -1.0631 -3.1794 5.9715 25 6 0.1666 -2.7482 6.4357 26 6 0.9024 -1.8415 5.7019 27 6 2.2465 -1.1985 5.9405 28 1 -0.3633 0.6532 0.7934 29 1 -0.3633 0.3605 -0.9623 30 1 -0.3633 -1.0137 0.1690 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3346 1.7751 -1.9432 34 1 1.9588 3.1894 -1.0609 35 1 3.1179 3.7142 -4.5166 36 1 4.3435 1.9233 3.0167 37 1 4.3938 0.6157 5.0984 38 1 0.5085 0.2592 2.0669 39 1 -1.2179 -1.4253 3.0934 40 1 -2.5183 -3.0409 4.4119 41 1 -1.6379 -3.8897 6.5472 42 1 0.5512 -3.1224 7.3730 43 1 3.0227 -1.9616 5.9971 44 1 2.2252 -0.6152 6.8611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752815213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:36 Heat of formation + Delta-G solvation = 10.105616 kcal Electronic energy + Delta-G solvation = -26136.970906 eV Core-core repulsion = 22597.342267 eV Total energy + Delta-G solvation = -3539.628640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.96741 -40.81292 -38.80786 -37.18557 -35.51103 -34.85168 -32.98448 -31.96968 -31.44956 -29.91149 -29.27693 -27.94208 -25.28127 -24.78803 -24.42838 -22.82387 -22.09245 -21.89385 -20.23300 -18.69839 -18.31434 -17.74812 -17.26661 -16.88419 -16.56504 -16.16787 -16.04559 -15.89220 -15.62769 -15.12685 -14.93277 -14.71428 -14.36176 -14.27411 -14.10024 -13.78614 -13.61909 -13.39214 -13.24729 -13.13992 -13.08319 -12.83236 -12.70432 -12.58679 -12.36741 -12.25068 -12.04186 -11.82056 -11.73325 -11.65119 -10.84204 -10.68658 -10.67679 -9.91254 -9.59027 -9.51017 -9.00674 -8.26279 -6.41639 -0.35515 0.01149 0.49390 0.89468 1.34357 1.36804 1.48897 1.74744 2.19809 2.38689 2.59870 3.03162 3.06097 3.22031 3.40000 3.58379 3.80059 3.90425 4.03149 4.08617 4.18979 4.29298 4.30048 4.35934 4.49803 4.50617 4.65498 4.68633 4.74182 4.75805 4.83772 4.86498 4.90894 4.98179 5.07114 5.10011 5.14717 5.19554 5.28364 5.37483 5.48806 5.51718 5.55176 5.62589 5.73130 5.77109 5.83450 6.01093 6.09523 6.60598 6.68162 7.18711 7.34332 8.81511 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003130 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.094589 B = 8943.863899 C = 9670.039939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.261 3.739 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.971 3.029 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.280 1.280 13 C 0.541 3.459 14 O -0.594 6.594 15 C -0.137 4.137 16 C -0.081 4.081 17 C -0.095 4.095 18 C -0.077 4.077 19 C -0.076 4.076 20 C -0.082 4.082 21 C -0.081 4.081 22 C -0.111 4.111 23 C -0.126 4.126 24 C -0.113 4.113 25 C -0.105 4.105 26 C -0.099 4.099 27 C -0.038 4.038 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.028 0.972 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.125 0.875 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 -17.924 22.641 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.322 5.322 4 C 0.140 3.860 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.794 3.206 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.205 1.205 13 C 0.331 3.669 14 O -0.476 6.476 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.113 4.113 18 C -0.077 4.077 19 C -0.076 4.076 20 C -0.100 4.100 21 C -0.081 4.081 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.099 4.099 27 C -0.073 4.073 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.142 0.858 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.643 -17.230 22.441 29.062 hybrid contribution 0.711 0.844 -1.393 1.777 sum -5.932 -16.386 21.048 27.326 Atomic orbital electron populations 1.22279 0.94246 1.03774 1.02001 1.21936 0.95659 0.81629 1.03743 1.48196 1.61928 1.14933 1.07099 1.18787 0.96335 0.90875 0.79975 1.21709 1.00157 1.30261 1.06402 0.92976 1.25878 1.01610 0.94260 0.97284 1.70060 1.36614 1.31957 1.17996 0.85325 0.78698 0.78107 0.78428 1.19173 1.19184 1.20536 1.18954 0.76859 0.86627 0.84492 1.90697 1.51613 1.18255 1.87023 1.19725 0.98365 1.00420 0.95481 1.21264 0.96845 0.98195 0.93671 1.20536 0.99108 0.95546 0.96111 1.20853 0.93457 0.96498 0.96873 1.19402 0.95933 0.97742 0.94524 1.21515 0.98082 0.93754 0.96669 1.19333 0.94793 0.97633 0.96385 1.21138 0.93317 0.97824 1.00597 1.21334 1.00669 0.97010 0.95383 1.21554 0.95686 0.99695 0.96114 1.20731 0.94541 0.96524 1.00499 1.20555 0.96851 0.97648 0.94844 1.19634 0.94464 0.97118 0.96124 0.92491 0.92868 0.87918 0.90700 0.88809 0.95441 0.98250 0.92259 0.85816 0.81747 0.83733 0.85639 0.83617 0.82852 0.83091 0.85757 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 9.15 71.98 0.66 -3.96 16 2 C 0.09 3.23 5.59 86.38 0.48 3.72 16 3 N -0.59 -27.59 2.46 -829.55 -2.04 -29.63 16 4 C 0.26 14.81 5.22 85.63 0.45 15.25 16 5 C -0.55 -32.70 9.39 25.60 0.24 -32.46 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 9 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.54 25.73 7.26 86.79 0.63 26.36 16 14 O -0.59 -33.90 16.54 -3.88 -0.06 -33.96 16 15 C -0.14 -5.02 5.07 -20.14 -0.10 -5.12 16 16 C -0.08 -2.58 9.69 22.57 0.22 -2.36 16 17 C -0.10 -2.20 10.02 22.18 0.22 -1.98 16 18 C -0.08 -1.68 6.31 -19.56 -0.12 -1.80 16 19 C -0.08 -1.95 6.19 -20.02 -0.12 -2.08 16 20 C -0.08 -2.49 7.47 22.79 0.17 -2.32 16 21 C -0.08 -1.78 6.20 -20.00 -0.12 -1.90 16 22 C -0.11 -2.10 10.09 22.53 0.23 -1.87 16 23 C -0.13 -1.79 10.02 22.22 0.22 -1.57 16 24 C -0.11 -1.33 10.05 22.32 0.22 -1.10 16 25 C -0.11 -1.33 10.03 22.22 0.22 -1.11 16 26 C -0.10 -1.69 6.30 -19.66 -0.12 -1.82 16 27 C -0.04 -0.55 6.71 29.24 0.20 -0.35 16 28 H 0.06 1.60 6.32 -2.39 -0.02 1.58 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.69 8.13 -2.38 -0.02 2.67 16 32 H 0.09 2.93 5.11 -2.39 -0.01 2.92 16 33 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 34 H 0.00 -0.04 7.35 -2.39 -0.02 -0.06 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.15 4.11 3.71 -2.91 -0.01 4.10 16 39 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -79.75 365.09 5.25 -74.50 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.01 Total: 13.55 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 4.03 Total: -15.48 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.76 Total: -86.45 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.06 Total: -33.96 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -79.75 5.25 -74.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752815213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.610 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds