Wall clock time and date at job start Tue Mar 31 2020 13:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99661 * 2 1 4 4 C 1.50700 * 109.47001 * 180.02562 * 3 2 1 5 5 O 1.21294 * 119.99874 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00259 * 179.97438 * 4 3 2 7 7 C 1.40090 * 120.00333 * 175.36704 * 6 4 3 8 8 C 1.38873 * 119.99820 * 35.34733 * 7 6 4 9 9 C 1.38048 * 119.99778 * 180.20990 * 8 7 6 10 10 C 1.38864 * 120.00369 * 359.51224 * 9 8 7 11 11 N 1.40109 * 120.00252 * 180.28010 * 10 9 8 12 12 C 1.34778 * 119.99623 * 324.90008 * 11 10 9 13 13 O 1.21584 * 120.00249 * 4.59271 * 12 11 10 14 14 N 1.34774 * 119.99775 * 184.58916 * 12 11 10 15 15 C 1.46504 * 120.00078 * 0.02562 * 14 12 11 16 16 C 1.46501 * 119.99912 * 180.02562 * 14 12 11 17 17 C 1.50707 * 109.47147 * 90.00433 * 16 14 12 18 18 H 1.07996 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99958 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47264 * 89.99518 * 21 19 17 23 23 H 1.48503 * 109.46956 * 209.99582 * 21 19 17 24 24 H 1.48498 * 109.47085 * 329.99699 * 21 19 17 25 25 C 1.38865 * 119.99809 * 0.25744 * 10 9 8 26 26 C 1.38054 * 119.99998 * 359.97427 * 25 10 9 27 27 H 1.09002 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46736 * 299.99392 * 1 2 3 29 29 H 1.08997 * 109.47112 * 59.99702 * 1 2 3 30 30 H 1.08999 * 109.47301 * 60.00282 * 3 2 1 31 31 H 1.09001 * 109.47311 * 300.00102 * 3 2 1 32 32 H 0.97003 * 120.00024 * 355.37167 * 6 4 3 33 33 H 1.07994 * 119.99823 * 359.97438 * 8 7 6 34 34 H 1.08004 * 120.00112 * 179.79138 * 9 8 7 35 35 H 0.96997 * 120.00017 * 144.90493 * 11 10 9 36 36 H 1.08997 * 109.47194 * 90.00203 * 15 14 12 37 37 H 1.09001 * 109.46939 * 210.00405 * 15 14 12 38 38 H 1.08999 * 109.46888 * 329.99291 * 15 14 12 39 39 H 1.09007 * 109.47163 * 209.99880 * 16 14 12 40 40 H 1.08996 * 109.47190 * 329.99660 * 16 14 12 41 41 H 0.97000 * 120.00038 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.00166 * 179.97438 * 25 10 9 43 43 H 1.07994 * 119.99780 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2764 2.2969 -0.0013 7 6 5.6698 2.1886 0.0961 8 6 6.3276 1.1259 -0.5092 9 6 7.7002 1.0168 -0.4096 10 6 8.4241 1.9752 0.2874 11 7 9.8178 1.8677 0.3835 12 6 10.3950 0.6534 0.4772 13 8 9.7150 -0.3511 0.3944 14 7 11.7261 0.5526 0.6626 15 6 12.5455 1.7629 0.7629 16 6 12.3537 -0.7673 0.7639 17 6 12.7639 -1.2352 -0.6087 18 1 12.5755 -0.6119 -1.4703 19 6 13.3786 -2.4594 -0.7646 20 7 13.6076 -3.2186 0.2846 21 14 13.8864 -3.0396 -2.4660 22 1 15.2716 -2.5864 -2.7507 23 1 13.8297 -4.5226 -2.5207 24 1 12.9616 -2.4712 -3.4793 25 6 7.7668 3.0405 0.8886 26 6 6.3937 3.1470 0.7931 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8615 3.1710 -0.0691 33 1 5.7650 0.3827 -1.0547 34 1 8.2115 0.1885 -0.8775 35 1 10.3671 2.6671 0.3827 36 1 12.6078 2.0741 1.8056 37 1 13.5468 1.5562 0.3850 38 1 12.0916 2.5588 0.1725 39 1 13.2338 -0.7031 1.4038 40 1 11.6441 -1.4752 1.1921 41 1 14.0404 -4.0797 0.1750 42 1 8.3297 3.7856 1.4310 43 1 5.8826 3.9756 1.2603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754435161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:57 Heat of formation + Delta-G solvation = -56.301501 kcal Electronic energy + Delta-G solvation = -26114.027844 eV Core-core repulsion = 22160.670313 eV Total energy + Delta-G solvation = -3953.357531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71610 -39.91304 -38.45772 -37.56364 -35.43084 -34.71223 -33.62240 -32.44465 -30.80050 -29.93332 -28.24967 -27.44447 -26.21287 -25.61712 -23.28670 -23.05411 -21.92028 -20.65448 -19.43479 -18.21075 -17.71443 -17.46778 -16.81653 -16.68424 -16.48869 -16.34009 -15.25035 -15.16054 -15.01521 -14.62406 -14.21474 -14.06944 -13.91368 -13.44875 -13.23493 -13.22518 -12.82936 -12.76958 -12.55513 -12.32110 -12.14089 -11.88107 -11.85795 -11.47745 -11.16738 -10.88542 -10.54960 -10.50703 -10.23887 -10.11708 -9.88477 -9.64374 -9.47189 -9.21658 -8.72133 -8.40249 -7.77691 -7.42376 -6.00842 -4.05599 1.34552 1.55386 2.34830 2.49146 3.23946 3.32892 3.40066 3.45282 3.67289 3.74170 4.10535 4.34002 4.42886 4.57085 4.60535 4.68773 4.88429 4.93705 4.96781 5.05914 5.27176 5.33106 5.47622 5.51645 5.59763 5.64954 5.86244 5.92346 6.11451 6.18686 6.30405 6.53352 6.56080 6.66769 6.83309 6.89359 7.19658 7.32140 7.38235 7.53178 7.69965 7.93482 7.97017 8.26051 8.60608 8.95179 9.27332 9.59739 11.07051 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.002522 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.571164 B =11100.052659 C =12360.739122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.046 3.954 4 C 0.506 3.494 5 O -0.492 6.492 6 N -0.670 5.670 7 C 0.110 3.890 8 C -0.097 4.097 9 C -0.102 4.102 10 C 0.170 3.830 11 N -0.697 5.697 12 C 0.696 3.304 13 O -0.565 6.565 14 N -0.613 5.613 15 C 0.084 3.916 16 C 0.259 3.741 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.140 4.140 26 C -0.124 4.124 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.401 0.599 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.126 0.874 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.312 19.383 0.789 28.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.034 4.034 4 C 0.292 3.708 5 O -0.364 6.364 6 N -0.318 5.318 7 C 0.016 3.984 8 C -0.118 4.118 9 C -0.123 4.123 10 C 0.073 3.927 11 N -0.347 5.347 12 C 0.398 3.602 13 O -0.441 6.441 14 N -0.348 5.348 15 C -0.060 4.060 16 C 0.140 3.860 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.161 4.161 26 C -0.145 4.145 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.243 0.757 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.238 0.762 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.172 17.376 0.831 27.402 hybrid contribution 0.243 0.836 -0.862 1.225 sum -20.929 18.212 -0.031 27.744 Atomic orbital electron populations 1.22860 0.80145 1.03556 1.00092 1.88053 1.19943 1.24866 1.95410 1.22185 0.91055 0.87355 1.02773 1.20412 0.88834 0.84577 0.76973 1.90808 1.74013 1.26302 1.45255 1.43250 1.05065 1.09416 1.74026 1.17613 0.81573 0.98360 1.00827 1.21188 0.93856 0.97796 0.98935 1.21431 0.93295 0.99736 0.97855 1.17628 0.82663 0.96067 0.96317 1.42995 1.04902 1.08759 1.78033 1.15945 0.82885 0.82731 0.78648 1.90907 1.61799 1.34810 1.56593 1.47505 1.04001 1.09304 1.73991 1.21585 0.97356 0.87143 0.99912 1.19262 0.92849 0.76633 0.97280 1.21449 1.38555 1.03139 0.93397 0.92477 1.24934 0.95854 0.96274 0.97082 1.69933 1.42704 1.11597 1.29123 0.86488 0.78601 0.77954 0.84320 1.20705 1.21074 1.19907 1.20605 0.93759 0.99930 1.01826 1.20504 0.93542 1.00002 1.00404 0.88914 0.93745 0.93736 0.89966 0.90023 0.75745 0.84409 0.83320 0.76241 0.93666 0.90288 0.93196 0.94762 0.93604 0.92707 0.85587 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.87 10.24 -55.14 -0.56 -4.43 16 3 C 0.05 0.35 6.42 36.01 0.23 0.58 16 4 C 0.51 5.87 7.75 -10.99 -0.09 5.79 16 5 O -0.49 -8.50 13.95 -14.37 -0.20 -8.70 16 6 N -0.67 -6.23 5.34 -9.82 -0.05 -6.28 16 7 C 0.11 1.40 6.30 -83.62 -0.53 0.87 16 8 C -0.10 -1.57 8.69 -39.42 -0.34 -1.92 16 9 C -0.10 -1.85 8.69 -39.42 -0.34 -2.19 16 10 C 0.17 2.73 6.30 -83.61 -0.53 2.21 16 11 N -0.70 -11.54 5.22 -14.18 -0.07 -11.61 16 12 C 0.70 15.26 8.12 -86.92 -0.71 14.55 16 13 O -0.57 -14.94 13.35 5.29 0.07 -14.87 16 14 N -0.61 -13.25 2.86 -188.73 -0.54 -13.79 16 15 C 0.08 1.31 10.24 59.85 0.61 1.92 16 16 C 0.26 6.89 5.16 -5.19 -0.03 6.86 16 17 C -0.53 -15.13 9.39 -34.44 -0.32 -15.46 16 18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 21 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.14 -1.71 9.96 -39.42 -0.39 -2.11 16 26 C -0.12 -1.35 9.96 -39.42 -0.39 -1.74 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 1.92 8.82 -40.82 -0.36 1.56 16 33 H 0.14 2.38 6.24 -52.49 -0.33 2.06 16 34 H 0.15 3.16 6.22 -52.48 -0.33 2.83 16 35 H 0.40 5.13 6.52 -40.82 -0.27 4.86 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 38 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 39 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -39.24 367.30 -7.67 -46.91 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.76 Total: 3.93 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.81 Total: 12.32 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.07 Total: -57.93 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.69 Total: -28.00 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.24 -7.67 -46.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754435161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.391 kcal (2) G-P(sol) polarization free energy of solvation -39.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds