Wall clock time and date at job start Tue Mar 31 2020 13:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99661 * 2 1 4 4 C 1.50700 * 109.47001 * 180.02562 * 3 2 1 5 5 O 1.21294 * 119.99874 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00259 * 179.97438 * 4 3 2 7 7 C 1.40090 * 120.00333 * 175.36704 * 6 4 3 8 8 C 1.38873 * 119.99820 * 35.34733 * 7 6 4 9 9 C 1.38048 * 119.99778 * 180.20990 * 8 7 6 10 10 C 1.38864 * 120.00369 * 359.51224 * 9 8 7 11 11 N 1.40109 * 120.00252 * 180.28010 * 10 9 8 12 12 C 1.34778 * 119.99623 * 324.90008 * 11 10 9 13 13 O 1.21584 * 120.00249 * 4.59271 * 12 11 10 14 14 N 1.34774 * 119.99775 * 184.58916 * 12 11 10 15 15 C 1.46504 * 120.00078 * 0.02562 * 14 12 11 16 16 C 1.46501 * 119.99912 * 180.02562 * 14 12 11 17 17 C 1.50707 * 109.47147 * 90.00433 * 16 14 12 18 18 H 1.07996 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99958 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47264 * 89.99518 * 21 19 17 23 23 H 1.48503 * 109.46956 * 209.99582 * 21 19 17 24 24 H 1.48498 * 109.47085 * 329.99699 * 21 19 17 25 25 C 1.38865 * 119.99809 * 0.25744 * 10 9 8 26 26 C 1.38054 * 119.99998 * 359.97427 * 25 10 9 27 27 H 1.09002 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46736 * 299.99392 * 1 2 3 29 29 H 1.08997 * 109.47112 * 59.99702 * 1 2 3 30 30 H 1.08999 * 109.47301 * 60.00282 * 3 2 1 31 31 H 1.09001 * 109.47311 * 300.00102 * 3 2 1 32 32 H 0.97003 * 120.00024 * 355.37167 * 6 4 3 33 33 H 1.07994 * 119.99823 * 359.97438 * 8 7 6 34 34 H 1.08004 * 120.00112 * 179.79138 * 9 8 7 35 35 H 0.96997 * 120.00017 * 144.90493 * 11 10 9 36 36 H 1.08997 * 109.47194 * 90.00203 * 15 14 12 37 37 H 1.09001 * 109.46939 * 210.00405 * 15 14 12 38 38 H 1.08999 * 109.46888 * 329.99291 * 15 14 12 39 39 H 1.09007 * 109.47163 * 209.99880 * 16 14 12 40 40 H 1.08996 * 109.47190 * 329.99660 * 16 14 12 41 41 H 0.97000 * 120.00038 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.00166 * 179.97438 * 25 10 9 43 43 H 1.07994 * 119.99780 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2764 2.2969 -0.0013 7 6 5.6698 2.1886 0.0961 8 6 6.3276 1.1259 -0.5092 9 6 7.7002 1.0168 -0.4096 10 6 8.4241 1.9752 0.2874 11 7 9.8178 1.8677 0.3835 12 6 10.3950 0.6534 0.4772 13 8 9.7150 -0.3511 0.3944 14 7 11.7261 0.5526 0.6626 15 6 12.5455 1.7629 0.7629 16 6 12.3537 -0.7673 0.7639 17 6 12.7639 -1.2352 -0.6087 18 1 12.5755 -0.6119 -1.4703 19 6 13.3786 -2.4594 -0.7646 20 7 13.6076 -3.2186 0.2846 21 14 13.8864 -3.0396 -2.4660 22 1 15.2716 -2.5864 -2.7507 23 1 13.8297 -4.5226 -2.5207 24 1 12.9616 -2.4712 -3.4793 25 6 7.7668 3.0405 0.8886 26 6 6.3937 3.1470 0.7931 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8615 3.1710 -0.0691 33 1 5.7650 0.3827 -1.0547 34 1 8.2115 0.1885 -0.8775 35 1 10.3671 2.6671 0.3827 36 1 12.6078 2.0741 1.8056 37 1 13.5468 1.5562 0.3850 38 1 12.0916 2.5588 0.1725 39 1 13.2338 -0.7031 1.4038 40 1 11.6441 -1.4752 1.1921 41 1 14.0404 -4.0797 0.1750 42 1 8.3297 3.7856 1.4310 43 1 5.8826 3.9756 1.2603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754435161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:56 Heat of formation + Delta-G solvation = -86.648214 kcal Electronic energy + Delta-G solvation = -26115.343777 eV Core-core repulsion = 22160.670313 eV Total energy + Delta-G solvation = -3954.673464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84664 -41.24533 -39.54383 -38.39026 -36.85064 -36.30961 -35.08528 -34.38649 -31.91599 -30.88634 -29.78727 -28.66430 -27.34251 -26.68639 -25.11021 -24.18271 -23.23510 -21.62243 -20.97380 -19.43846 -18.89827 -18.64714 -18.29336 -18.26884 -17.31596 -17.05904 -16.84042 -16.62124 -16.11898 -15.94009 -15.64992 -15.32208 -15.04423 -14.87244 -14.56789 -14.25453 -14.09884 -13.92748 -13.72535 -13.69815 -13.46987 -13.15767 -13.13269 -12.82802 -12.67403 -12.52746 -12.35286 -12.21104 -11.77259 -11.68534 -10.99597 -10.88266 -10.77292 -10.66756 -10.64027 -9.87582 -9.50566 -8.66559 -8.22442 -6.37834 0.21203 0.44973 1.34159 1.38292 1.46689 1.48601 1.67261 1.81479 2.17850 2.38189 2.88052 3.04771 3.08548 3.11210 3.63575 3.98123 4.06395 4.18435 4.27397 4.28933 4.40905 4.47427 4.49772 4.58051 4.59028 4.66555 4.79431 4.85074 4.88624 4.97359 5.13800 5.19104 5.31365 5.39033 5.50625 5.54641 5.62065 5.78849 6.02863 6.04894 6.09622 6.12424 6.46968 6.70819 7.06710 7.15041 7.29275 7.63821 8.83662 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.002522 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.571164 B =11100.052659 C =12360.739122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.051 3.949 4 C 0.498 3.502 5 O -0.562 6.562 6 N -0.648 5.648 7 C 0.116 3.884 8 C -0.120 4.120 9 C -0.134 4.134 10 C 0.142 3.858 11 N -0.673 5.673 12 C 0.689 3.311 13 O -0.624 6.624 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.275 3.725 17 C -0.542 4.542 18 H 0.051 0.949 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.281 1.281 24 H -0.277 1.277 25 C -0.118 4.118 26 C -0.102 4.102 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.435 0.565 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.422 0.578 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.032 0.968 40 H -0.004 1.004 41 H 0.267 0.733 42 H 0.170 0.830 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.782 24.081 1.110 33.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.028 4.028 4 C 0.287 3.713 5 O -0.439 6.439 6 N -0.298 5.298 7 C 0.021 3.979 8 C -0.141 4.141 9 C -0.155 4.155 10 C 0.046 3.954 11 N -0.325 5.325 12 C 0.391 3.609 13 O -0.504 6.504 14 N -0.355 5.355 15 C -0.064 4.064 16 C 0.153 3.847 17 C -0.581 4.581 18 H 0.069 0.931 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.139 4.139 26 C -0.122 4.122 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.276 0.724 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.014 0.986 41 H 0.076 0.924 42 H 0.187 0.813 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.665 22.231 1.151 31.769 hybrid contribution 0.553 -0.550 -0.926 1.211 sum -22.112 21.680 0.226 30.968 Atomic orbital electron populations 1.23034 0.78000 1.04034 1.01938 1.87991 1.22406 1.27081 1.95869 1.22383 0.87291 0.86863 1.06234 1.21419 0.90939 0.83831 0.75125 1.90800 1.75518 1.29060 1.48474 1.43117 1.03515 1.10496 1.72664 1.17743 0.83319 0.97239 0.99568 1.20998 0.93129 0.99292 1.00633 1.21102 0.94372 0.99853 1.00181 1.17858 0.82160 0.97413 0.97968 1.42558 1.05479 1.07428 1.76993 1.16186 0.82715 0.83660 0.78322 1.90880 1.63205 1.37417 1.58936 1.47364 1.04600 1.09486 1.74039 1.21918 0.96463 0.85422 1.02591 1.18704 0.91376 0.78538 0.96052 1.21706 1.38703 1.03671 0.94021 0.93058 1.25861 0.95760 0.96324 1.01307 1.70050 1.43300 1.12025 1.31364 0.85409 0.78998 0.77378 0.78962 1.18370 1.20664 1.20194 1.21056 0.94528 0.98483 0.99806 1.21061 0.92948 1.00048 0.98183 0.89355 0.91811 0.91827 0.86181 0.86278 0.72448 0.87136 0.88422 0.73756 0.90752 0.90782 0.89392 0.94988 0.98580 0.92371 0.81259 0.80182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.44 10.24 -129.94 -1.33 -9.77 16 3 C 0.05 0.62 6.42 71.24 0.46 1.08 16 4 C 0.50 11.14 7.75 87.66 0.68 11.82 16 5 O -0.56 -20.62 13.95 15.96 0.22 -20.40 16 6 N -0.65 -10.32 5.34 -303.37 -1.62 -11.94 16 7 C 0.12 2.76 6.30 38.12 0.24 3.00 16 8 C -0.12 -4.15 8.69 22.38 0.19 -3.96 16 9 C -0.13 -5.27 8.69 22.37 0.19 -5.08 16 10 C 0.14 4.53 6.30 38.12 0.24 4.77 16 11 N -0.67 -22.06 5.22 -317.05 -1.66 -23.72 16 12 C 0.69 31.62 8.12 179.05 1.45 33.07 16 13 O -0.62 -35.97 13.35 -3.98 -0.05 -36.03 16 14 N -0.62 -27.60 2.86 -869.29 -2.48 -30.08 16 15 C 0.08 2.30 10.24 127.77 1.31 3.61 16 16 C 0.27 15.45 5.16 85.63 0.44 15.89 16 17 C -0.54 -32.46 9.39 25.60 0.24 -32.22 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 19 C 0.01 0.38 5.46 84.65 0.46 0.85 16 20 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 21 Si 0.97 46.69 29.54 68.60 2.03 48.72 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 25 C -0.12 -2.43 9.96 22.38 0.22 -2.21 16 26 C -0.10 -1.75 9.96 22.38 0.22 -1.52 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.43 1.99 8.82 -92.71 -0.82 1.17 16 33 H 0.11 4.35 6.24 -2.91 -0.02 4.33 16 34 H 0.10 4.78 6.22 -2.91 -0.02 4.77 16 35 H 0.42 9.71 6.52 -92.71 -0.60 9.11 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 38 H 0.09 1.90 6.30 -2.39 -0.02 1.88 16 39 H 0.03 1.78 8.07 -2.38 -0.02 1.77 16 40 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -98.31 367.30 2.63 -95.68 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.37 Total: 14.47 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 7.61 Total: 30.61 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.47 Total: -123.28 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: -1.16 Total: -66.20 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -98.31 2.63 -95.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754435161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.030 kcal (2) G-P(sol) polarization free energy of solvation -98.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds