Wall clock time and date at job start Tue Mar 31 2020 12:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46953 * 2 1 4 4 C 1.46499 * 119.99907 * 270.00040 * 3 2 1 5 5 C 1.50707 * 109.46657 * 269.99911 * 4 3 2 6 6 H 1.07994 * 120.00035 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99360 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99815 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00433 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47176 * 89.99801 * 9 7 5 11 11 H 1.48500 * 109.47120 * 209.99638 * 9 7 5 12 12 H 1.48500 * 109.46973 * 329.99801 * 9 7 5 13 13 C 1.34781 * 119.99987 * 90.00146 * 3 2 1 14 14 O 1.21276 * 120.00010 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99753 * 359.97438 * 13 3 2 16 16 O 1.45199 * 109.46861 * 179.97438 * 15 13 3 17 17 C 1.34232 * 117.00032 * 179.97438 * 16 15 13 18 18 O 1.20830 * 119.99699 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00221 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47352 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47164 * 179.97438 * 20 19 17 22 22 C 1.38624 * 120.44417 * 124.99635 * 21 20 19 23 23 C 1.38574 * 118.39673 * 179.70022 * 22 21 20 24 24 N 1.32345 * 119.10916 * 0.28037 * 23 22 21 25 25 C 1.31789 * 120.81651 * 359.97438 * 24 23 22 26 26 N 1.31809 * 121.75220 * 0.02562 * 25 24 23 27 27 H 1.09008 * 109.47063 * 300.00369 * 1 2 3 28 28 H 1.08996 * 109.47119 * 59.99507 * 1 2 3 29 29 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46929 * 240.00126 * 2 1 3 31 31 H 1.09000 * 109.46887 * 120.00047 * 2 1 3 32 32 H 1.08996 * 109.47091 * 29.99973 * 4 3 2 33 33 H 1.08998 * 109.46836 * 150.00622 * 4 3 2 34 34 H 0.96999 * 119.99881 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47117 * 60.00222 * 15 13 3 36 36 H 1.08999 * 109.47102 * 300.00332 * 15 13 3 37 37 H 1.09003 * 109.47073 * 59.99699 * 19 17 16 38 38 H 1.09005 * 109.47163 * 300.00081 * 19 17 16 39 39 H 1.08995 * 109.47163 * 59.99700 * 20 19 17 40 40 H 1.08995 * 109.46907 * 299.99945 * 20 19 17 41 41 H 1.08002 * 120.80485 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.45088 * 180.29937 * 23 22 21 43 43 H 1.08002 * 119.12276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0127 3.4351 -3.9292 10 1 3.1162 4.8554 -3.5082 11 1 3.4057 3.3119 -5.3560 12 1 1.6131 2.9691 -3.7592 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3063 2.4724 16 8 2.3065 2.1957 3.5760 17 6 2.1346 1.7122 4.8164 18 8 1.7345 0.5832 4.9746 19 6 2.4407 2.5776 6.0115 20 6 2.1625 1.7922 7.2947 21 6 2.4692 2.6574 8.4898 22 6 1.5078 2.8753 9.4644 23 6 1.8374 3.6730 10.5485 24 7 3.0491 4.2014 10.6143 25 6 3.9361 3.9764 9.6659 26 7 3.6580 3.2233 8.6206 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0956 3.1411 -1.1383 34 1 5.7169 2.5725 -4.0841 35 1 2.6212 0.4186 2.5303 36 1 0.9432 1.0125 2.5299 37 1 1.8119 3.4676 5.9862 38 1 3.4896 2.8732 5.9870 39 1 2.7916 0.9025 7.3196 40 1 1.1137 1.4963 7.3193 41 1 0.5270 2.4305 9.3831 42 1 1.1155 3.8608 11.3295 43 1 4.9167 4.4217 9.7471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755633876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:08 Heat of formation + Delta-G solvation = -71.652277 kcal Electronic energy + Delta-G solvation = -25820.303213 eV Core-core repulsion = 21866.280022 eV Total energy + Delta-G solvation = -3954.023191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46240 -40.62895 -39.10715 -36.67991 -35.47895 -35.35875 -33.22972 -32.77977 -31.68375 -30.48196 -29.38714 -27.32484 -26.12945 -24.78730 -23.08515 -23.01683 -22.21454 -20.74633 -18.70513 -18.20996 -17.88043 -17.08279 -17.01930 -16.77900 -16.68928 -15.98195 -15.87595 -15.43183 -15.24565 -14.91251 -14.34656 -14.08334 -13.86149 -13.59800 -13.47975 -13.24432 -12.90354 -12.78735 -12.44100 -12.32952 -12.21700 -11.86148 -11.74082 -11.48789 -11.27683 -11.05120 -10.98751 -10.92480 -10.66166 -10.61390 -10.53103 -10.19271 -10.04169 -9.65684 -9.57929 -9.13605 -8.61391 -7.84629 -6.11012 -4.10448 0.46891 0.60673 2.07026 2.36734 3.14255 3.27460 3.33150 3.34450 3.35454 3.55545 3.73066 3.77605 4.02933 4.36311 4.37277 4.59091 4.60998 4.71728 4.74552 4.78630 5.03726 5.08072 5.13476 5.17212 5.22117 5.29016 5.30436 5.46999 5.50326 5.59738 5.63175 5.90397 5.94581 6.07866 6.30078 6.32953 6.56504 6.63661 6.87700 7.22373 7.56270 7.61102 7.66361 8.08777 8.42567 8.79584 8.92482 9.48385 11.02218 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002176 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.930663 B =12863.720641 C =13655.370254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.517 6.517 15 C 0.051 3.949 16 O -0.328 6.328 17 C 0.464 3.536 18 O -0.514 6.514 19 C -0.105 4.105 20 C -0.061 4.061 21 C 0.180 3.820 22 C -0.223 4.223 23 C 0.149 3.851 24 N -0.526 5.526 25 C 0.299 3.701 26 N -0.516 5.516 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.426 -2.366 23.984 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.027 4.027 16 O -0.243 6.243 17 C 0.307 3.693 18 O -0.403 6.403 19 C -0.143 4.143 20 C -0.098 4.098 21 C 0.033 3.967 22 C -0.245 4.245 23 C -0.016 4.016 24 N -0.240 5.240 25 C 0.012 3.988 26 N -0.230 5.230 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.167 0.833 42 H 0.186 0.814 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.289 -1.627 23.894 26.066 hybrid contribution -1.280 -0.072 -0.745 1.483 sum -11.569 -1.699 23.149 25.934 Atomic orbital electron populations 1.22246 0.96500 1.01876 1.02306 1.21542 0.93636 0.83570 1.03514 1.47878 1.64234 1.13543 1.06475 1.19704 0.97543 0.93430 0.79527 1.21310 0.95260 1.33136 1.07245 0.90680 1.24860 0.95031 0.95779 0.97347 1.69897 1.15113 1.44859 1.23518 0.86845 0.81393 0.81633 0.79778 1.19856 1.21034 1.19068 1.19735 0.79444 0.87132 0.84336 1.90720 1.44205 1.17611 1.86738 1.22934 1.02751 0.92700 0.84272 1.86568 1.78360 1.44937 1.14396 1.23658 0.74011 0.86860 0.84738 1.90664 1.42802 1.20071 1.86780 1.21235 1.06623 0.98376 0.88102 1.20434 1.04184 0.96965 0.88264 1.21629 0.88730 0.91736 0.94573 1.22826 1.02308 1.02462 0.96881 1.23265 0.93110 0.89536 0.95720 1.68445 1.03194 1.23034 1.29371 1.25056 0.98938 0.90542 0.84304 1.68264 1.20556 1.09735 1.24462 0.93050 0.91979 0.91675 0.89166 0.91369 0.94881 0.94424 0.92507 0.88408 0.88640 0.87495 0.86133 0.88032 0.88583 0.83263 0.81406 0.78539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.81 2.46 -175.05 -0.43 -12.24 16 4 C 0.22 5.23 4.23 -5.19 -0.02 5.21 16 5 C -0.53 -15.09 9.94 -34.44 -0.34 -15.44 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.51 10.41 7.75 -10.98 -0.09 10.32 16 14 O -0.52 -12.95 16.08 -14.10 -0.23 -13.17 16 15 C 0.05 0.79 4.50 36.01 0.16 0.95 16 16 O -0.33 -5.20 9.75 -45.91 -0.45 -5.64 16 17 C 0.46 5.90 7.96 36.00 0.29 6.19 16 18 O -0.51 -7.15 15.73 -18.75 -0.30 -7.45 16 19 C -0.11 -0.97 5.68 -27.89 -0.16 -1.13 16 20 C -0.06 -0.46 4.94 -27.88 -0.14 -0.60 16 21 C 0.18 1.43 6.21 -82.24 -0.51 0.92 16 22 C -0.22 -1.35 9.80 -39.32 -0.39 -1.73 16 23 C 0.15 0.94 11.30 -17.21 -0.19 0.75 16 24 N -0.53 -4.46 10.44 -14.58 -0.15 -4.61 16 25 C 0.30 2.48 12.29 -92.15 -1.13 1.35 16 26 N -0.52 -4.80 10.03 -10.79 -0.11 -4.91 16 27 H 0.05 0.59 7.22 -51.92 -0.37 0.21 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.10 1.39 7.39 -51.93 -0.38 1.01 16 36 H 0.10 1.25 7.18 -51.93 -0.37 0.87 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 1.14 7.98 -51.93 -0.41 0.73 16 39 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.10 0.60 7.90 -51.93 -0.41 0.19 16 41 H 0.15 0.50 8.01 -52.49 -0.42 0.08 16 42 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -37.08 372.08 -8.19 -45.27 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.98 Total: -1.44 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -2.26 Total: 8.60 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.08 Total: -48.46 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.97 Total: -26.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.08 -8.19 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755633876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.379 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds