Wall clock time and date at job start Tue Mar 31 2020 12:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46953 * 2 1 4 4 C 1.46499 * 119.99907 * 270.00040 * 3 2 1 5 5 C 1.50707 * 109.46657 * 269.99911 * 4 3 2 6 6 H 1.07994 * 120.00035 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99360 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99815 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00433 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47176 * 89.99801 * 9 7 5 11 11 H 1.48500 * 109.47120 * 209.99638 * 9 7 5 12 12 H 1.48500 * 109.46973 * 329.99801 * 9 7 5 13 13 C 1.34781 * 119.99987 * 90.00146 * 3 2 1 14 14 O 1.21276 * 120.00010 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99753 * 359.97438 * 13 3 2 16 16 O 1.45199 * 109.46861 * 179.97438 * 15 13 3 17 17 C 1.34232 * 117.00032 * 179.97438 * 16 15 13 18 18 O 1.20830 * 119.99699 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00221 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47352 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47164 * 179.97438 * 20 19 17 22 22 C 1.38624 * 120.44417 * 124.99635 * 21 20 19 23 23 C 1.38574 * 118.39673 * 179.70022 * 22 21 20 24 24 N 1.32345 * 119.10916 * 0.28037 * 23 22 21 25 25 C 1.31789 * 120.81651 * 359.97438 * 24 23 22 26 26 N 1.31809 * 121.75220 * 0.02562 * 25 24 23 27 27 H 1.09008 * 109.47063 * 300.00369 * 1 2 3 28 28 H 1.08996 * 109.47119 * 59.99507 * 1 2 3 29 29 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46929 * 240.00126 * 2 1 3 31 31 H 1.09000 * 109.46887 * 120.00047 * 2 1 3 32 32 H 1.08996 * 109.47091 * 29.99973 * 4 3 2 33 33 H 1.08998 * 109.46836 * 150.00622 * 4 3 2 34 34 H 0.96999 * 119.99881 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47117 * 60.00222 * 15 13 3 36 36 H 1.08999 * 109.47102 * 300.00332 * 15 13 3 37 37 H 1.09003 * 109.47073 * 59.99699 * 19 17 16 38 38 H 1.09005 * 109.47163 * 300.00081 * 19 17 16 39 39 H 1.08995 * 109.47163 * 59.99700 * 20 19 17 40 40 H 1.08995 * 109.46907 * 299.99945 * 20 19 17 41 41 H 1.08002 * 120.80485 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.45088 * 180.29937 * 23 22 21 43 43 H 1.08002 * 119.12276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0127 3.4351 -3.9292 10 1 3.1162 4.8554 -3.5082 11 1 3.4057 3.3119 -5.3560 12 1 1.6131 2.9691 -3.7592 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3063 2.4724 16 8 2.3065 2.1957 3.5760 17 6 2.1346 1.7122 4.8164 18 8 1.7345 0.5832 4.9746 19 6 2.4407 2.5776 6.0115 20 6 2.1625 1.7922 7.2947 21 6 2.4692 2.6574 8.4898 22 6 1.5078 2.8753 9.4644 23 6 1.8374 3.6730 10.5485 24 7 3.0491 4.2014 10.6143 25 6 3.9361 3.9764 9.6659 26 7 3.6580 3.2233 8.6206 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0956 3.1411 -1.1383 34 1 5.7169 2.5725 -4.0841 35 1 2.6212 0.4186 2.5303 36 1 0.9432 1.0125 2.5299 37 1 1.8119 3.4676 5.9862 38 1 3.4896 2.8732 5.9870 39 1 2.7916 0.9025 7.3196 40 1 1.1137 1.4963 7.3193 41 1 0.5270 2.4305 9.3831 42 1 1.1155 3.8608 11.3295 43 1 4.9167 4.4217 9.7471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755633876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:02 Heat of formation + Delta-G solvation = -95.215985 kcal Electronic energy + Delta-G solvation = -25821.325012 eV Core-core repulsion = 21866.280022 eV Total energy + Delta-G solvation = -3955.044990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 4.75 seconds Orbital eigenvalues (eV) -42.05453 -41.70686 -40.61884 -37.80619 -37.03283 -36.05298 -34.88650 -33.79694 -32.37990 -32.00010 -30.73401 -28.87747 -27.01378 -25.31713 -24.53526 -24.17621 -23.39369 -21.69856 -20.23267 -19.15608 -19.11347 -18.53705 -18.04878 -17.93992 -17.76603 -17.25023 -16.73288 -16.46114 -16.31561 -16.06183 -15.64248 -15.18591 -14.89050 -14.76964 -14.53174 -14.39970 -14.06636 -13.96781 -13.74212 -13.69049 -13.39370 -13.22337 -13.13745 -12.56996 -12.42742 -12.39980 -12.13602 -12.02128 -11.79491 -11.77485 -11.74952 -11.73405 -11.52343 -10.83985 -10.79734 -10.53874 -10.21793 -9.53506 -8.34418 -6.40139 -0.05431 0.09370 1.06786 1.25033 1.33944 1.37554 1.45678 1.57559 2.30627 2.33355 2.80713 2.99641 3.04046 3.31141 3.39267 3.47725 3.61336 3.86126 3.95589 4.01867 4.05476 4.13289 4.15664 4.23895 4.36657 4.50558 4.58647 4.64103 4.73637 4.76036 4.85740 4.89875 4.95930 4.98807 4.99365 5.28032 5.36540 5.44372 5.46138 5.56302 6.05567 6.20775 6.48787 6.61447 6.61721 7.12575 7.15116 7.28256 8.82391 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002176 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.930663 B =12863.720641 C =13655.370254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.944 5.944 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.235 1.235 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.061 3.939 16 O -0.352 6.352 17 C 0.467 3.533 18 O -0.524 6.524 19 C -0.099 4.099 20 C -0.052 4.052 21 C 0.163 3.837 22 C -0.214 4.214 23 C 0.143 3.857 24 N -0.547 5.547 25 C 0.286 3.714 26 N -0.542 5.542 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.181 0.819 42 H 0.200 0.800 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -3.016 25.091 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.158 1.158 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.268 6.268 17 C 0.312 3.688 18 O -0.413 6.413 19 C -0.136 4.136 20 C -0.090 4.090 21 C 0.017 3.983 22 C -0.235 4.235 23 C -0.022 4.022 24 N -0.261 5.261 25 C -0.002 4.002 26 N -0.256 5.256 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.198 0.802 42 H 0.217 0.783 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.555 -2.344 25.024 28.556 hybrid contribution -0.211 0.056 -0.987 1.011 sum -13.767 -2.288 24.037 27.794 Atomic orbital electron populations 1.22179 0.93581 1.03943 1.02306 1.21899 0.95962 0.80704 1.04403 1.47980 1.63870 1.15352 1.05287 1.19377 0.95055 0.93162 0.81994 1.21546 0.97050 1.32279 1.06795 0.95277 1.25877 0.96780 0.97199 0.98997 1.70054 1.17444 1.46488 1.24446 0.85705 0.80530 0.78941 0.77716 1.20249 1.20032 1.15814 1.20604 0.78051 0.86685 0.85969 1.90680 1.46826 1.20260 1.87759 1.22818 1.04913 0.91901 0.81904 1.86579 1.79014 1.45748 1.15477 1.24227 0.73286 0.87084 0.84246 1.90651 1.43412 1.20589 1.86668 1.21304 1.06513 0.98563 0.87262 1.20395 1.05083 0.96284 0.87237 1.21780 0.89031 0.92161 0.95302 1.23135 1.03031 1.01558 0.95776 1.23866 0.92915 0.88846 0.96542 1.68484 1.04224 1.23798 1.29611 1.25377 0.99775 0.90768 0.84287 1.68246 1.21627 1.10588 1.25187 0.92124 0.92928 0.88516 0.90098 0.88814 0.92591 0.96124 0.92248 0.86941 0.85375 0.86032 0.86731 0.88857 0.86756 0.80191 0.78313 0.77182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 71.98 0.74 -2.63 16 2 C 0.09 2.58 5.93 86.38 0.51 3.09 16 3 N -0.59 -23.58 2.46 -826.13 -2.03 -25.61 16 4 C 0.23 10.85 4.23 85.64 0.36 11.21 16 5 C -0.54 -31.55 9.94 25.60 0.25 -31.30 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.56 5.47 84.65 0.46 1.03 16 8 N -0.94 -59.76 13.96 21.45 0.30 -59.47 16 9 Si 0.95 44.12 27.47 68.60 1.88 46.01 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 13 C 0.50 20.48 7.75 87.66 0.68 21.16 16 14 O -0.58 -29.69 16.08 15.78 0.25 -29.43 16 15 C 0.06 1.82 4.50 71.24 0.32 2.14 16 16 O -0.35 -10.92 9.75 -45.08 -0.44 -11.36 16 17 C 0.47 11.25 7.96 71.23 0.57 11.81 16 18 O -0.52 -13.48 15.73 21.95 0.35 -13.13 16 19 C -0.10 -1.70 5.68 29.85 0.17 -1.53 16 20 C -0.05 -0.71 4.94 29.85 0.15 -0.56 16 21 C 0.16 2.36 6.21 42.58 0.26 2.62 16 22 C -0.21 -2.04 9.80 22.44 0.22 -1.82 16 23 C 0.14 1.50 11.30 84.70 0.96 2.46 16 24 N -0.55 -8.72 10.44 -200.05 -2.09 -10.80 16 25 C 0.29 4.65 12.29 180.88 2.22 6.87 16 26 N -0.54 -9.86 10.03 -188.06 -1.89 -11.74 16 27 H 0.06 1.16 7.22 -2.38 -0.02 1.14 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 32 H 0.06 2.43 7.13 -2.39 -0.02 2.41 16 33 H 0.02 1.07 6.85 -2.39 -0.02 1.05 16 34 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.11 3.00 7.39 -2.38 -0.02 2.98 16 36 H 0.13 2.94 7.18 -2.39 -0.02 2.93 16 37 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 2.16 7.98 -2.38 -0.02 2.14 16 39 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 40 H 0.11 1.11 7.90 -2.39 -0.02 1.09 16 41 H 0.18 0.50 8.01 -2.91 -0.02 0.47 16 42 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.21 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -84.73 372.08 5.18 -79.55 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.96 Total: 11.44 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 7.88 Total: 24.55 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -5.70 Total: -107.62 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: 0.16 Total: -53.93 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Total: -84.73 5.18 -79.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755633876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.668 kcal (2) G-P(sol) polarization free energy of solvation -84.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds