Wall clock time and date at job start Tue Mar 31 2020 13:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00241 * 2 1 4 4 O 1.21592 * 119.99900 * 359.97438 * 3 2 1 5 5 C 1.47609 * 120.00122 * 180.02562 * 3 2 1 6 6 C 1.39699 * 120.06473 * 359.97214 * 5 3 2 7 7 C 1.37826 * 120.03856 * 180.02562 * 6 5 3 8 8 C 1.38774 * 120.16802 * 359.97438 * 7 6 5 9 9 O 1.35822 * 119.93289 * 180.27655 * 8 7 6 10 10 C 1.42903 * 116.99983 * 359.72639 * 9 8 7 11 11 C 1.39555 * 120.13310 * 0.02562 * 8 7 6 12 12 N 1.39981 * 120.01857 * 180.02562 * 11 8 7 13 13 C 1.46506 * 120.00063 * 179.97438 * 12 11 8 14 14 C 1.50697 * 109.47429 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99968 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99931 * 180.02562 * 14 13 12 17 17 C 1.46495 * 119.99756 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47181 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99815 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00307 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99846 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47254 * 90.00318 * 22 20 18 24 24 H 1.48495 * 109.47153 * 210.00326 * 22 20 18 25 25 H 1.48500 * 109.47384 * 330.00388 * 22 20 18 26 26 C 1.38301 * 119.95968 * 0.02562 * 11 8 7 27 27 H 1.08999 * 109.47154 * 300.00585 * 1 2 3 28 28 H 1.09006 * 109.46753 * 60.00348 * 1 2 3 29 29 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99921 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.97775 * 0.04977 * 6 5 3 32 32 H 1.07998 * 119.91483 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46692 * 59.99706 * 10 9 8 34 34 H 1.08995 * 109.47042 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47100 * 300.00351 * 10 9 8 36 36 H 0.97001 * 120.00416 * 0.02562 * 12 11 8 37 37 H 1.09001 * 109.46889 * 300.00574 * 13 12 11 38 38 H 1.09004 * 109.46733 * 60.00139 * 13 12 11 39 39 H 0.96992 * 119.99901 * 359.97438 * 16 14 13 40 40 H 1.09001 * 109.47262 * 299.99399 * 17 16 14 41 41 H 1.09004 * 109.47516 * 59.99672 * 17 16 14 42 42 H 0.97003 * 119.99836 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.08546 * 179.97438 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6150 1.1671 -0.0006 6 6 4.3148 -0.0419 -0.0005 7 6 5.6931 -0.0413 -0.0005 8 6 6.3900 1.1588 -0.0011 9 8 7.7482 1.1538 -0.0068 10 6 8.3923 -0.1219 -0.0059 11 6 5.6980 2.3707 -0.0012 12 7 6.4034 3.5798 -0.0023 13 6 5.6766 4.8519 -0.0029 14 6 6.6609 5.9929 -0.0047 15 8 7.8524 5.7660 -0.0059 16 7 6.2173 7.2656 -0.0050 17 6 7.1743 8.3748 -0.0074 18 6 6.4267 9.6833 -0.0079 19 1 5.3466 9.6881 -0.0062 20 6 7.1213 10.8743 -0.0095 21 7 8.4364 10.8684 -0.0111 22 14 6.1945 12.4961 -0.0108 23 1 5.9496 12.9275 1.3888 24 1 7.0013 13.5267 -0.7124 25 1 4.8959 12.3236 -0.7100 26 6 4.3150 2.3764 -0.0001 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.7755 -0.9776 -0.0009 32 1 6.2321 -0.9772 -0.0009 33 1 8.0935 -0.6803 -0.8930 34 1 9.4733 0.0170 -0.0103 35 1 8.1010 -0.6753 0.8869 36 1 7.3734 3.5755 -0.0034 37 1 5.0498 4.9117 -0.8927 38 1 5.0505 4.9130 0.8873 39 1 5.2645 7.4471 -0.0045 40 1 7.8020 8.3151 0.8817 41 1 7.7994 8.3136 -0.8983 42 1 8.9252 11.7063 -0.0118 43 1 3.7775 3.3131 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759771106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:01 Heat of formation + Delta-G solvation = -79.934896 kcal Electronic energy + Delta-G solvation = -25873.311440 eV Core-core repulsion = 21918.929087 eV Total energy + Delta-G solvation = -3954.382352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72120 -39.58940 -39.00968 -37.38359 -35.36675 -34.81236 -34.20754 -32.39082 -30.76142 -30.30410 -28.05551 -27.90829 -26.67149 -25.79464 -23.33477 -22.76030 -21.65126 -20.66025 -19.81557 -18.87217 -17.85897 -17.52969 -16.68538 -16.10216 -16.00490 -15.76269 -15.41957 -15.39416 -15.21775 -15.15723 -14.73052 -14.36932 -14.02272 -13.80867 -13.57724 -13.33527 -13.16877 -12.98780 -12.64102 -12.55799 -12.52811 -12.01405 -11.91161 -11.70921 -11.24768 -11.24253 -10.99460 -10.89523 -10.33699 -10.26274 -10.17499 -9.44009 -9.42640 -9.23145 -8.76936 -8.74781 -7.97389 -7.29428 -6.18135 -4.25267 0.75802 1.29495 2.73929 2.92536 3.02399 3.21088 3.24724 3.29223 3.31822 3.35354 3.74301 4.09858 4.36067 4.52042 4.52855 4.71546 4.85321 4.92845 4.93174 5.11701 5.18221 5.19472 5.23378 5.27345 5.36605 5.44121 5.47166 5.50287 5.58508 5.77815 5.99820 6.06816 6.15799 6.45072 6.88489 7.20355 7.23224 7.31962 7.37153 7.47266 7.63178 7.84968 7.94306 8.00155 8.53152 8.72046 8.98044 9.41151 10.92034 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002543 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.877873 B =11007.812191 C =13102.637825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.735 5.735 3 C 0.562 3.438 4 O -0.536 6.536 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.172 4.172 8 C 0.082 3.918 9 O -0.313 6.313 10 C 0.030 3.970 11 C 0.198 3.802 12 N -0.723 5.723 13 C 0.101 3.899 14 C 0.494 3.506 15 O -0.552 6.552 16 N -0.706 5.706 17 C 0.250 3.750 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.115 4.115 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.401 0.599 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.419 0.581 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.394 0.606 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -28.370 0.027 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.388 5.388 3 C 0.350 3.650 4 O -0.413 6.413 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.191 4.191 8 C 0.033 3.967 9 O -0.226 6.226 10 C -0.065 4.065 11 C 0.093 3.907 12 N -0.357 5.357 13 C -0.027 4.027 14 C 0.278 3.722 15 O -0.431 6.431 16 N -0.354 5.354 17 C 0.129 3.871 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.236 0.764 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.258 0.742 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.227 0.773 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.717 -27.246 0.018 28.927 hybrid contribution -0.323 0.263 0.011 0.417 sum -10.040 -26.983 0.030 28.791 Atomic orbital electron populations 1.21539 0.79374 1.02140 1.02547 1.45696 1.07762 1.08692 1.76613 1.18276 0.87364 0.83581 0.75791 1.90793 1.70053 1.31135 1.49316 1.19426 0.92048 0.93790 1.07681 1.20688 0.93455 0.96468 1.02548 1.20848 0.94786 0.96350 1.07137 1.18698 0.82780 0.92624 1.02635 1.86043 1.16002 1.31690 1.88862 1.23047 0.98230 0.84090 1.01102 1.17044 0.90527 0.84227 0.98874 1.44328 1.09543 1.00633 1.81159 1.21165 0.94750 0.83547 1.03284 1.20297 0.89356 0.84613 0.77931 1.90661 1.16793 1.84414 1.51266 1.46411 1.11512 1.05799 1.71685 1.19153 0.88137 0.81918 0.97888 1.21219 0.93348 0.90341 1.53350 0.91758 1.24957 0.94922 0.99523 0.94629 1.69974 1.05986 1.27507 1.48814 0.86392 0.79609 0.82544 0.78250 1.20434 1.21005 1.19677 1.20553 0.90638 0.98671 1.04033 0.92095 0.92101 0.90699 0.76443 0.85993 0.84946 0.92697 0.88180 0.92703 0.74171 0.89435 0.89425 0.77317 0.95370 0.95366 0.92416 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.85 0.64 1.19 16 2 N -0.74 -5.60 5.66 -68.12 -0.39 -5.99 16 3 C 0.56 6.54 7.76 -12.44 -0.10 6.44 16 4 O -0.54 -8.29 16.34 5.28 0.09 -8.20 16 5 C -0.13 -1.40 5.87 -104.97 -0.62 -2.02 16 6 C -0.11 -0.93 9.53 -39.19 -0.37 -1.31 16 7 C -0.17 -1.54 9.01 -39.53 -0.36 -1.90 16 8 C 0.08 0.97 6.71 -38.89 -0.26 0.71 16 9 O -0.31 -3.70 9.72 -19.18 -0.19 -3.89 16 10 C 0.03 0.22 9.81 101.05 0.99 1.21 16 11 C 0.20 2.65 6.66 -83.62 -0.56 2.10 16 12 N -0.72 -10.87 5.70 -59.71 -0.34 -11.21 16 13 C 0.10 1.48 5.39 -5.19 -0.03 1.46 16 14 C 0.49 9.71 7.90 -10.99 -0.09 9.63 16 15 O -0.55 -13.00 15.67 5.55 0.09 -12.91 16 16 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 17 C 0.25 6.58 5.43 -5.20 -0.03 6.55 16 18 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 19 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 22 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.11 -1.47 8.85 -39.00 -0.35 -1.81 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.40 1.82 6.85 -40.82 -0.28 1.54 16 31 H 0.12 0.60 6.39 -52.49 -0.34 0.26 16 32 H 0.13 0.81 6.27 -52.49 -0.33 0.48 16 33 H 0.05 0.31 7.64 -51.93 -0.40 -0.08 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 36 H 0.42 6.99 6.79 -40.82 -0.28 6.71 16 37 H 0.09 1.14 7.95 -51.93 -0.41 0.72 16 38 H 0.09 1.14 7.95 -51.93 -0.41 0.72 16 39 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 1.88 6.31 -52.49 -0.33 1.55 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -35.64 368.05 -6.94 -42.58 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.58 Total: 9.65 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.53 Total: 8.86 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.33 Total: -57.55 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.01 Total: -25.00 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.64 -6.94 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759771106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.356 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds