Wall clock time and date at job start Tue Mar 31 2020 13:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00241 * 2 1 4 4 O 1.21592 * 119.99900 * 359.97438 * 3 2 1 5 5 C 1.47609 * 120.00122 * 180.02562 * 3 2 1 6 6 C 1.39699 * 120.06473 * 359.97214 * 5 3 2 7 7 C 1.37826 * 120.03856 * 180.02562 * 6 5 3 8 8 C 1.38774 * 120.16802 * 359.97438 * 7 6 5 9 9 O 1.35822 * 119.93289 * 180.27655 * 8 7 6 10 10 C 1.42903 * 116.99983 * 359.72639 * 9 8 7 11 11 C 1.39555 * 120.13310 * 0.02562 * 8 7 6 12 12 N 1.39981 * 120.01857 * 180.02562 * 11 8 7 13 13 C 1.46506 * 120.00063 * 179.97438 * 12 11 8 14 14 C 1.50697 * 109.47429 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99968 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99931 * 180.02562 * 14 13 12 17 17 C 1.46495 * 119.99756 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47181 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99815 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00307 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99846 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47254 * 90.00318 * 22 20 18 24 24 H 1.48495 * 109.47153 * 210.00326 * 22 20 18 25 25 H 1.48500 * 109.47384 * 330.00388 * 22 20 18 26 26 C 1.38301 * 119.95968 * 0.02562 * 11 8 7 27 27 H 1.08999 * 109.47154 * 300.00585 * 1 2 3 28 28 H 1.09006 * 109.46753 * 60.00348 * 1 2 3 29 29 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99921 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.97775 * 0.04977 * 6 5 3 32 32 H 1.07998 * 119.91483 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46692 * 59.99706 * 10 9 8 34 34 H 1.08995 * 109.47042 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47100 * 300.00351 * 10 9 8 36 36 H 0.97001 * 120.00416 * 0.02562 * 12 11 8 37 37 H 1.09001 * 109.46889 * 300.00574 * 13 12 11 38 38 H 1.09004 * 109.46733 * 60.00139 * 13 12 11 39 39 H 0.96992 * 119.99901 * 359.97438 * 16 14 13 40 40 H 1.09001 * 109.47262 * 299.99399 * 17 16 14 41 41 H 1.09004 * 109.47516 * 59.99672 * 17 16 14 42 42 H 0.97003 * 119.99836 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.08546 * 179.97438 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6150 1.1671 -0.0006 6 6 4.3148 -0.0419 -0.0005 7 6 5.6931 -0.0413 -0.0005 8 6 6.3900 1.1588 -0.0011 9 8 7.7482 1.1538 -0.0068 10 6 8.3923 -0.1219 -0.0059 11 6 5.6980 2.3707 -0.0012 12 7 6.4034 3.5798 -0.0023 13 6 5.6766 4.8519 -0.0029 14 6 6.6609 5.9929 -0.0047 15 8 7.8524 5.7660 -0.0059 16 7 6.2173 7.2656 -0.0050 17 6 7.1743 8.3748 -0.0074 18 6 6.4267 9.6833 -0.0079 19 1 5.3466 9.6881 -0.0062 20 6 7.1213 10.8743 -0.0095 21 7 8.4364 10.8684 -0.0111 22 14 6.1945 12.4961 -0.0108 23 1 5.9496 12.9275 1.3888 24 1 7.0013 13.5267 -0.7124 25 1 4.8959 12.3236 -0.7100 26 6 4.3150 2.3764 -0.0001 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.7755 -0.9776 -0.0009 32 1 6.2321 -0.9772 -0.0009 33 1 8.0935 -0.6803 -0.8930 34 1 9.4733 0.0170 -0.0103 35 1 8.1010 -0.6753 0.8869 36 1 7.3734 3.5755 -0.0034 37 1 5.0498 4.9117 -0.8927 38 1 5.0505 4.9130 0.8873 39 1 5.2645 7.4471 -0.0045 40 1 7.8020 8.3151 0.8817 41 1 7.7994 8.3136 -0.8983 42 1 8.9252 11.7063 -0.0118 43 1 3.7775 3.3131 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759771106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:01 Heat of formation + Delta-G solvation = -109.400216 kcal Electronic energy + Delta-G solvation = -25874.589152 eV Core-core repulsion = 21918.929087 eV Total energy + Delta-G solvation = -3955.660064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57917 -40.70027 -40.34071 -38.27546 -36.52215 -36.04838 -35.55894 -34.41707 -31.64477 -31.30600 -29.63073 -28.64438 -27.69732 -26.88301 -24.62179 -24.10820 -22.73180 -21.51837 -21.41314 -19.85261 -18.94043 -18.61636 -18.04276 -17.39465 -17.17076 -16.88039 -16.62572 -16.56173 -16.34542 -16.15960 -16.14541 -15.46671 -15.06160 -14.91313 -14.79594 -14.38538 -14.18519 -14.05870 -13.93917 -13.78079 -13.63037 -13.25724 -13.03228 -12.95847 -12.72830 -12.69998 -12.24866 -11.94959 -11.94389 -11.51448 -11.20846 -11.08604 -10.96648 -10.82968 -10.15506 -9.92813 -9.55586 -8.31127 -8.25895 -6.47636 -0.08557 0.49657 1.42594 1.44798 1.56135 1.58240 1.88469 1.99168 2.26821 2.32590 2.41142 2.73979 2.91152 3.03945 3.76871 3.81269 3.84135 4.03037 4.25776 4.29126 4.32984 4.40560 4.43926 4.46963 4.51382 4.67324 4.76489 4.80590 4.94006 5.02629 5.06183 5.20314 5.25475 5.34556 5.42037 5.43336 5.60533 5.66980 5.81042 6.00057 6.45511 6.57536 6.61923 6.70001 6.81000 7.19414 7.25220 7.35477 8.81034 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002543 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.877873 B =11007.812191 C =13102.637825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.556 3.444 4 O -0.585 6.585 5 C -0.141 4.141 6 C -0.087 4.087 7 C -0.165 4.165 8 C 0.075 3.925 9 O -0.341 6.341 10 C 0.020 3.980 11 C 0.170 3.830 12 N -0.738 5.738 13 C 0.119 3.881 14 C 0.494 3.506 15 O -0.594 6.594 16 N -0.701 5.701 17 C 0.266 3.734 18 C -0.557 4.557 19 H 0.084 0.916 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.256 1.256 26 C -0.126 4.126 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.418 0.582 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.412 0.588 40 H -0.010 1.010 41 H -0.010 1.010 42 H 0.269 0.731 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.649 -31.098 0.024 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.345 3.655 4 O -0.467 6.467 5 C -0.145 4.145 6 C -0.107 4.107 7 C -0.184 4.184 8 C 0.025 3.975 9 O -0.255 6.255 10 C -0.074 4.074 11 C 0.067 3.933 12 N -0.373 5.373 13 C -0.009 4.009 14 C 0.281 3.719 15 O -0.476 6.476 16 N -0.351 5.351 17 C 0.144 3.856 18 C -0.595 4.595 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.808 3.192 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.180 1.180 26 C -0.150 4.150 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.256 0.744 31 H 0.184 0.816 32 H 0.186 0.814 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.248 0.752 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.078 0.922 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.096 -30.086 0.017 32.427 hybrid contribution 0.437 0.886 0.013 0.988 sum -11.659 -29.200 0.030 31.442 Atomic orbital electron populations 1.21711 0.78364 1.04492 1.01486 1.45602 1.08464 1.08262 1.74566 1.18450 0.87618 0.83965 0.75446 1.90767 1.70892 1.33047 1.51968 1.19534 0.92021 0.94301 1.08613 1.21150 0.93420 0.97070 0.99093 1.21256 0.95058 0.96591 1.05531 1.18977 0.83179 0.93050 1.02255 1.86020 1.16196 1.34464 1.88857 1.23356 0.98480 0.82796 1.02791 1.17231 0.90814 0.84197 1.01009 1.44267 1.08920 1.01152 1.82921 1.21047 0.93106 0.81574 1.05126 1.21137 0.89644 0.85154 0.75979 1.90635 1.19144 1.85058 1.52721 1.46120 1.11583 1.05224 1.72146 1.18591 0.88526 0.84173 0.94354 1.21614 0.94373 0.90504 1.52990 0.89760 1.26063 0.95767 1.03937 0.93823 1.70133 1.08080 1.28757 1.49896 0.85149 0.78483 0.76945 0.78611 1.19587 1.20892 1.17982 1.20550 0.90504 0.99216 1.04723 0.93205 0.93215 0.86597 0.74355 0.81596 0.81403 0.90890 0.87491 0.90907 0.75508 0.87441 0.87421 0.75233 0.99167 0.99159 0.92208 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.21 16 2 N -0.72 -8.88 5.66 -487.69 -2.76 -11.64 16 3 C 0.56 12.23 7.76 86.72 0.67 12.90 16 4 O -0.59 -18.25 16.34 -4.01 -0.07 -18.31 16 5 C -0.14 -2.90 5.87 -20.09 -0.12 -3.02 16 6 C -0.09 -1.14 9.53 22.53 0.21 -0.92 16 7 C -0.17 -2.39 9.01 22.30 0.20 -2.19 16 8 C 0.07 1.68 6.71 22.72 0.15 1.83 16 9 O -0.34 -7.86 9.72 -91.55 -0.89 -8.75 16 10 C 0.02 0.24 9.81 113.37 1.11 1.35 16 11 C 0.17 4.56 6.66 38.17 0.25 4.81 16 12 N -0.74 -22.95 5.70 -342.81 -1.96 -24.91 16 13 C 0.12 3.58 5.39 85.63 0.46 4.05 16 14 C 0.49 20.25 7.90 87.66 0.69 20.94 16 15 O -0.59 -29.65 15.67 -3.05 -0.05 -29.70 16 16 N -0.70 -30.09 5.55 -466.79 -2.59 -32.68 16 17 C 0.27 14.78 5.43 85.63 0.46 15.24 16 18 C -0.56 -30.65 9.28 25.60 0.24 -30.41 16 19 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 20 C 0.00 0.21 5.46 84.66 0.46 0.68 16 21 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 22 Si 0.99 42.91 29.54 68.60 2.03 44.94 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 C -0.13 -3.20 8.85 22.64 0.20 -3.00 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.42 1.94 6.85 -92.71 -0.63 1.31 16 31 H 0.17 0.64 6.39 -2.91 -0.02 0.62 16 32 H 0.17 1.20 6.27 -2.91 -0.02 1.18 16 33 H 0.07 0.61 7.64 -2.39 -0.02 0.59 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 36 H 0.41 14.39 6.79 -92.71 -0.63 13.76 16 37 H 0.11 2.80 7.95 -2.39 -0.02 2.78 16 38 H 0.11 2.80 7.95 -2.38 -0.02 2.78 16 39 H 0.41 14.59 8.32 -92.71 -0.77 13.81 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 42 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.13 3.53 6.31 -2.91 -0.02 3.51 16 Total: -1.00 -83.25 368.05 -0.58 -83.82 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.95 Total: 29.02 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 6.38 Total: 24.49 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -7.02 Total: -125.50 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.00 Total: -56.76 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -83.25 -0.58 -83.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759771106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.575 kcal (2) G-P(sol) polarization free energy of solvation -83.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds