Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 117.00366 * 2 1 4 4 C 1.38742 * 119.95417 * 0.27536 * 3 2 1 5 5 C 1.38213 * 120.13656 * 180.23502 * 4 3 2 6 6 C 1.38642 * 120.05790 * 359.48923 * 5 4 3 7 7 N 1.40338 * 120.04309 * 180.23551 * 6 5 4 8 8 C 1.34785 * 119.99550 * 325.31500 * 7 6 5 9 9 C 1.50701 * 119.99682 * 184.48434 * 8 7 6 10 10 O 1.21303 * 119.99963 * 4.48322 * 8 7 6 11 11 C 1.39455 * 119.91364 * 0.25697 * 6 5 4 12 12 N 1.39878 * 120.06352 * 180.02562 * 11 6 5 13 13 C 1.46500 * 119.99482 * 180.02562 * 12 11 6 14 14 C 1.50700 * 109.47361 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99600 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00404 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00037 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47191 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99577 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00033 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00250 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46942 * 90.00337 * 22 20 18 24 24 H 1.48492 * 109.47392 * 210.00563 * 22 20 18 25 25 H 1.48502 * 109.47186 * 330.00565 * 22 20 18 26 26 C 1.38647 * 119.95819 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47530 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47153 * 300.00094 * 1 2 3 29 29 H 1.08997 * 109.47325 * 59.99661 * 1 2 3 30 30 H 1.07997 * 119.93280 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.96960 * 179.76858 * 5 4 3 32 32 H 0.96996 * 120.00231 * 145.31604 * 7 6 5 33 33 H 1.08997 * 109.47160 * 90.00011 * 9 8 7 34 34 H 1.08995 * 109.46831 * 209.99897 * 9 8 7 35 35 H 1.08998 * 109.46967 * 329.99943 * 9 8 7 36 36 H 0.96997 * 120.00869 * 359.97438 * 12 11 6 37 37 H 1.09001 * 109.47158 * 299.99777 * 13 12 11 38 38 H 1.09005 * 109.47087 * 59.99801 * 13 12 11 39 39 H 0.96997 * 119.99575 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.47092 * 299.99958 * 17 16 14 41 41 H 1.08997 * 109.47411 * 59.99769 * 17 16 14 42 42 H 0.97004 * 120.00473 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03252 * 0.04064 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2898 2.3744 0.0058 5 6 1.9134 3.6079 0.0009 6 6 3.2976 3.6862 0.0009 7 7 3.9304 4.9388 0.0009 8 6 3.3776 5.9731 -0.6633 9 6 4.1059 7.2896 -0.7483 10 8 2.2938 5.8442 -1.1927 11 6 4.0602 2.5186 0.0004 12 7 5.4569 2.5940 0.0010 13 6 6.2566 1.3665 -0.0001 14 6 7.7213 1.7211 0.0001 15 8 8.0635 2.8846 0.0016 16 7 8.6510 0.7453 -0.0002 17 6 10.0748 1.0901 0.0006 18 6 10.8975 -0.1726 0.0006 19 1 10.4085 -1.1356 -0.0003 20 6 12.2742 -0.0984 0.0008 21 7 12.8695 1.0742 0.0014 22 14 13.2939 -1.6635 0.0016 23 1 13.5643 -2.0787 -1.3983 24 1 14.5798 -1.4162 0.7018 25 1 12.5480 -2.7399 0.7018 26 6 3.4309 1.2829 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2114 2.3158 0.0098 31 1 1.3219 4.5115 0.0016 32 1 4.7657 5.0602 0.4789 33 1 4.7410 7.2969 -1.6341 34 1 3.3820 8.1018 -0.8137 35 1 4.7216 7.4223 0.1413 36 1 5.8961 3.4588 0.0013 37 1 6.0242 0.7806 0.8892 38 1 6.0247 0.7825 -0.8908 39 1 8.3773 -0.1853 -0.0010 40 1 10.3073 1.6756 -0.8889 41 1 10.3067 1.6744 0.8910 42 1 13.8382 1.1265 0.0019 43 1 4.0189 0.3770 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759775905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = -80.379386 kcal Electronic energy + Delta-G solvation = -26064.935127 eV Core-core repulsion = 22110.533500 eV Total energy + Delta-G solvation = -3954.401627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83864 -39.58289 -39.20075 -37.80111 -35.05156 -34.47554 -34.28008 -32.46858 -30.86510 -30.20909 -28.96164 -27.63013 -27.01736 -25.99098 -23.27372 -22.44065 -21.47765 -20.61536 -19.97044 -18.84283 -17.74608 -17.23954 -17.11326 -16.25902 -15.95146 -15.85360 -15.64558 -15.38055 -15.28746 -15.00637 -14.78924 -14.32381 -13.98941 -13.73711 -13.61107 -13.23441 -13.02181 -12.75943 -12.75533 -12.46935 -12.39487 -12.31653 -12.04931 -11.83684 -11.52413 -11.15313 -11.05451 -10.95288 -10.40303 -10.21965 -10.08062 -9.77381 -9.50424 -9.35236 -8.84178 -8.20821 -8.07058 -7.29408 -6.24856 -4.32408 1.31885 1.47188 2.44516 2.89539 3.00480 3.08382 3.19675 3.25988 3.28011 3.37957 3.77366 4.00001 4.29393 4.54754 4.77674 4.92619 4.95323 4.97457 5.04462 5.11757 5.15752 5.16021 5.24826 5.28452 5.35500 5.39481 5.42224 5.53756 5.68048 5.79551 6.11269 6.33766 6.38373 6.59260 7.00083 7.16722 7.22087 7.25576 7.35415 7.38495 7.54511 7.62293 7.86514 7.99146 8.42580 8.62863 8.87533 9.34379 10.85265 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002596 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.665110 B =10781.697391 C =12760.321075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.163 3.837 4 C -0.253 4.253 5 C -0.033 4.033 6 C 0.029 3.971 7 N -0.665 5.665 8 C 0.511 3.489 9 C -0.172 4.172 10 O -0.536 6.536 11 C 0.244 3.756 12 N -0.727 5.727 13 C 0.102 3.898 14 C 0.494 3.506 15 O -0.556 6.556 16 N -0.704 5.704 17 C 0.250 3.750 18 C -0.546 4.546 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.221 4.221 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.408 0.592 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.394 0.606 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.769 3.779 1.351 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.116 3.884 4 C -0.274 4.274 5 C -0.054 4.054 6 C -0.067 4.067 7 N -0.312 5.312 8 C 0.299 3.701 9 C -0.232 4.232 10 O -0.413 6.413 11 C 0.137 3.863 12 N -0.359 5.359 13 C -0.026 4.026 14 C 0.278 3.722 15 O -0.436 6.436 16 N -0.352 5.352 17 C 0.129 3.871 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.245 4.245 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.243 0.757 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.248 0.752 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.227 0.773 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.828 4.283 0.957 23.246 hybrid contribution 0.995 -0.795 0.191 1.288 sum -21.833 3.488 1.148 22.140 Atomic orbital electron populations 1.23026 0.78510 1.03638 1.01434 1.86054 1.21267 1.27159 1.88600 1.18636 0.91506 0.83927 0.94289 1.20861 0.99719 0.91597 1.15218 1.20769 0.92098 0.98002 0.94498 1.17086 0.91605 0.83038 1.15006 1.43419 1.26916 1.08716 1.52155 1.20938 0.86177 0.85918 0.77036 1.21890 1.02226 0.94251 1.04823 1.90694 1.21061 1.83491 1.46059 1.17216 0.83113 0.91900 0.94059 1.44312 1.01497 1.08762 1.81377 1.21167 0.89772 0.88203 1.03474 1.20316 0.87450 0.86564 0.77899 1.90639 1.82061 1.19238 1.51626 1.46418 1.08954 1.08413 1.71399 1.19163 0.73174 0.96843 0.97898 1.21206 0.91481 0.92180 1.53549 0.91761 1.24949 0.97750 0.96715 0.94550 1.69964 1.10117 1.23485 1.48681 0.86393 0.79516 0.82606 0.78291 1.20405 1.20964 1.19674 1.19547 0.91745 0.96333 1.16897 0.88468 0.92669 0.92638 0.85641 0.84221 0.75652 0.88381 0.88685 0.89872 0.75224 0.89219 0.89307 0.77294 0.95359 0.95335 0.92355 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.55 10.50 -19.63 -0.21 -3.76 16 3 C 0.16 1.98 6.68 -39.24 -0.26 1.72 16 4 C -0.25 -2.92 9.03 -39.40 -0.36 -3.28 16 5 C -0.03 -0.42 8.69 -39.44 -0.34 -0.76 16 6 C 0.03 0.38 6.33 -83.36 -0.53 -0.15 16 7 N -0.67 -7.21 5.03 -9.67 -0.05 -7.26 16 8 C 0.51 5.70 7.79 -10.98 -0.09 5.61 16 9 C -0.17 -1.21 10.31 36.01 0.37 -0.84 16 10 O -0.54 -7.86 14.52 5.54 0.08 -7.78 16 11 C 0.24 3.14 6.67 -83.57 -0.56 2.58 16 12 N -0.73 -9.50 5.69 -59.66 -0.34 -9.84 16 13 C 0.10 1.32 5.39 -5.19 -0.03 1.30 16 14 C 0.49 8.84 7.90 -10.98 -0.09 8.75 16 15 O -0.56 -11.90 15.67 5.56 0.09 -11.81 16 16 N -0.70 -13.58 5.55 -61.47 -0.34 -13.92 16 17 C 0.25 6.28 5.43 -5.19 -0.03 6.25 16 18 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 19 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 22 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 26 C -0.22 -2.77 9.25 -39.27 -0.36 -3.13 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.34 7.64 -51.93 -0.40 -0.06 16 29 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 30 H 0.13 1.17 6.28 -52.49 -0.33 0.84 16 31 H 0.14 1.82 6.20 -52.49 -0.33 1.49 16 32 H 0.41 3.64 7.70 -40.82 -0.31 3.33 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.41 5.54 6.04 -40.82 -0.25 5.30 16 37 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 38 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 39 H 0.39 6.39 8.32 -40.82 -0.34 6.05 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.14 1.54 6.73 -52.49 -0.35 1.19 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -33.82 366.34 -6.82 -40.65 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.60 Total: 11.24 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.69 Total: 6.31 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.01 Total: -55.66 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.35 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.82 -6.82 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759775905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.734 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds