Wall clock time and date at job start Tue Mar 31 2020 13:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 117.00366 * 2 1 4 4 C 1.38742 * 119.95417 * 0.27536 * 3 2 1 5 5 C 1.38213 * 120.13656 * 180.23502 * 4 3 2 6 6 C 1.38642 * 120.05790 * 359.48923 * 5 4 3 7 7 N 1.40338 * 120.04309 * 180.23551 * 6 5 4 8 8 C 1.34785 * 119.99550 * 325.31500 * 7 6 5 9 9 C 1.50701 * 119.99682 * 184.48434 * 8 7 6 10 10 O 1.21303 * 119.99963 * 4.48322 * 8 7 6 11 11 C 1.39455 * 119.91364 * 0.25697 * 6 5 4 12 12 N 1.39878 * 120.06352 * 180.02562 * 11 6 5 13 13 C 1.46500 * 119.99482 * 180.02562 * 12 11 6 14 14 C 1.50700 * 109.47361 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99600 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00404 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00037 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47191 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99577 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00033 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00250 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46942 * 90.00337 * 22 20 18 24 24 H 1.48492 * 109.47392 * 210.00563 * 22 20 18 25 25 H 1.48502 * 109.47186 * 330.00565 * 22 20 18 26 26 C 1.38647 * 119.95819 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47530 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47153 * 300.00094 * 1 2 3 29 29 H 1.08997 * 109.47325 * 59.99661 * 1 2 3 30 30 H 1.07997 * 119.93280 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.96960 * 179.76858 * 5 4 3 32 32 H 0.96996 * 120.00231 * 145.31604 * 7 6 5 33 33 H 1.08997 * 109.47160 * 90.00011 * 9 8 7 34 34 H 1.08995 * 109.46831 * 209.99897 * 9 8 7 35 35 H 1.08998 * 109.46967 * 329.99943 * 9 8 7 36 36 H 0.96997 * 120.00869 * 359.97438 * 12 11 6 37 37 H 1.09001 * 109.47158 * 299.99777 * 13 12 11 38 38 H 1.09005 * 109.47087 * 59.99801 * 13 12 11 39 39 H 0.96997 * 119.99575 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.47092 * 299.99958 * 17 16 14 41 41 H 1.08997 * 109.47411 * 59.99769 * 17 16 14 42 42 H 0.97004 * 120.00473 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03252 * 0.04064 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2898 2.3744 0.0058 5 6 1.9134 3.6079 0.0009 6 6 3.2976 3.6862 0.0009 7 7 3.9304 4.9388 0.0009 8 6 3.3776 5.9731 -0.6633 9 6 4.1059 7.2896 -0.7483 10 8 2.2938 5.8442 -1.1927 11 6 4.0602 2.5186 0.0004 12 7 5.4569 2.5940 0.0010 13 6 6.2566 1.3665 -0.0001 14 6 7.7213 1.7211 0.0001 15 8 8.0635 2.8846 0.0016 16 7 8.6510 0.7453 -0.0002 17 6 10.0748 1.0901 0.0006 18 6 10.8975 -0.1726 0.0006 19 1 10.4085 -1.1356 -0.0003 20 6 12.2742 -0.0984 0.0008 21 7 12.8695 1.0742 0.0014 22 14 13.2939 -1.6635 0.0016 23 1 13.5643 -2.0787 -1.3983 24 1 14.5798 -1.4162 0.7018 25 1 12.5480 -2.7399 0.7018 26 6 3.4309 1.2829 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2114 2.3158 0.0098 31 1 1.3219 4.5115 0.0016 32 1 4.7657 5.0602 0.4789 33 1 4.7410 7.2969 -1.6341 34 1 3.3820 8.1018 -0.8137 35 1 4.7216 7.4223 0.1413 36 1 5.8961 3.4588 0.0013 37 1 6.0242 0.7806 0.8892 38 1 6.0247 0.7825 -0.8908 39 1 8.3773 -0.1853 -0.0010 40 1 10.3073 1.6756 -0.8889 41 1 10.3067 1.6744 0.8910 42 1 13.8382 1.1265 0.0019 43 1 4.0189 0.3770 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759775905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:33 Heat of formation + Delta-G solvation = -106.540025 kcal Electronic energy + Delta-G solvation = -26066.069537 eV Core-core repulsion = 22110.533500 eV Total energy + Delta-G solvation = -3955.536037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75753 -40.67831 -40.40619 -38.76690 -36.36413 -35.83184 -35.36312 -34.38870 -31.64518 -31.25716 -30.01613 -29.05733 -27.70231 -27.28188 -24.73787 -23.78868 -22.43388 -21.60908 -21.37208 -19.91015 -18.83316 -18.49833 -18.06660 -17.59197 -17.29520 -16.94067 -16.72854 -16.52272 -16.39205 -16.25526 -15.93688 -15.44821 -15.17523 -14.95705 -14.66274 -14.44184 -14.09288 -14.00506 -13.85853 -13.63549 -13.39747 -13.25521 -13.06789 -13.04306 -12.92024 -12.71894 -12.30373 -12.23436 -11.94995 -11.49165 -11.17789 -10.98717 -10.93196 -10.81073 -10.67328 -9.88712 -9.13151 -8.29647 -8.24066 -6.45537 0.38553 0.52953 1.44499 1.45846 1.57022 1.58435 1.62633 1.90536 2.16669 2.33706 2.46534 2.77163 2.85485 3.06068 3.78401 3.80894 3.91087 4.17164 4.23902 4.35609 4.38794 4.41953 4.47069 4.50112 4.50996 4.62263 4.72031 4.80729 4.85456 5.06223 5.09783 5.21393 5.24042 5.43407 5.45445 5.46420 5.62399 5.69042 5.83750 6.08683 6.42061 6.51765 6.56558 6.65289 6.82747 7.14084 7.22170 7.38859 8.82282 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002596 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.665110 B =10781.697391 C =12760.321075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.158 3.842 4 C -0.250 4.250 5 C -0.045 4.045 6 C 0.017 3.983 7 N -0.661 5.661 8 C 0.504 3.496 9 C -0.165 4.165 10 O -0.576 6.576 11 C 0.237 3.763 12 N -0.732 5.732 13 C 0.117 3.883 14 C 0.494 3.506 15 O -0.594 6.594 16 N -0.700 5.700 17 C 0.267 3.733 18 C -0.556 4.556 19 H 0.085 0.915 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.981 3.019 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.255 1.255 26 C -0.228 4.228 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.416 0.584 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.405 0.595 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.412 0.588 40 H -0.010 1.010 41 H -0.008 1.008 42 H 0.268 0.732 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.849 1.819 1.566 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.111 3.889 4 C -0.271 4.271 5 C -0.066 4.066 6 C -0.081 4.081 7 N -0.308 5.308 8 C 0.295 3.705 9 C -0.224 4.224 10 O -0.456 6.456 11 C 0.131 3.869 12 N -0.365 5.365 13 C -0.010 4.010 14 C 0.280 3.720 15 O -0.475 6.475 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.594 4.594 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.805 3.195 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.179 1.179 26 C -0.252 4.252 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.150 0.850 32 H 0.253 0.747 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.243 0.757 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.248 0.752 40 H 0.008 0.992 41 H 0.010 0.990 42 H 0.077 0.923 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.953 2.289 1.186 24.092 hybrid contribution 1.211 -0.151 0.128 1.227 sum -22.742 2.138 1.314 22.880 Atomic orbital electron populations 1.23328 0.76516 1.05450 1.02213 1.86039 1.23364 1.26592 1.88399 1.18732 0.91639 0.84478 0.94077 1.21079 1.00825 0.91062 1.14131 1.20817 0.92223 0.98258 0.95273 1.17290 0.91902 0.83818 1.15056 1.43468 1.27039 1.08268 1.51986 1.21693 0.85822 0.86976 0.76029 1.21922 1.02360 0.91897 1.06253 1.90670 1.22919 1.84269 1.47752 1.17229 0.82773 0.92173 0.94714 1.44275 1.01621 1.08530 1.82036 1.21137 0.85499 0.88529 1.05851 1.21146 0.89295 0.85535 0.76001 1.90623 1.83131 1.20969 1.52826 1.46097 1.06940 1.09872 1.72054 1.18571 0.76646 0.96005 0.94401 1.21629 0.91947 0.93027 1.52759 0.89695 1.26012 0.99318 1.00206 0.93935 1.70119 1.10511 1.26228 1.50034 0.85201 0.77438 0.78352 0.78529 1.19760 1.21115 1.17880 1.19754 0.92269 0.96523 1.16651 0.86264 0.91682 0.92032 0.83691 0.84989 0.74679 0.87561 0.87901 0.87632 0.75678 0.86453 0.86966 0.75175 0.99186 0.99013 0.92275 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.72 10.50 -93.14 -0.98 -7.70 16 3 C 0.16 3.59 6.68 22.49 0.15 3.74 16 4 C -0.25 -5.50 9.03 22.38 0.20 -5.30 16 5 C -0.04 -1.13 8.69 22.36 0.19 -0.94 16 6 C 0.02 0.42 6.33 38.17 0.24 0.66 16 7 N -0.66 -14.17 5.03 -302.89 -1.52 -15.70 16 8 C 0.50 11.17 7.79 87.66 0.68 11.85 16 9 C -0.17 -2.14 10.31 71.24 0.73 -1.41 16 10 O -0.58 -17.16 14.52 -3.10 -0.05 -17.20 16 11 C 0.24 5.83 6.67 38.26 0.26 6.09 16 12 N -0.73 -18.28 5.69 -342.68 -1.95 -20.23 16 13 C 0.12 2.80 5.39 85.63 0.46 3.26 16 14 C 0.49 17.43 7.90 87.66 0.69 18.12 16 15 O -0.59 -25.89 15.67 -3.04 -0.05 -25.94 16 16 N -0.70 -26.73 5.55 -466.79 -2.59 -29.32 16 17 C 0.27 13.78 5.43 85.63 0.46 14.25 16 18 C -0.56 -28.90 9.28 25.60 0.24 -28.66 16 19 H 0.09 3.96 7.60 -2.91 -0.02 3.94 16 20 C 0.01 0.27 5.46 84.65 0.46 0.73 16 21 N -0.93 -54.53 13.29 21.44 0.28 -54.25 16 22 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.23 -5.31 9.25 22.47 0.21 -5.10 16 27 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.65 7.64 -2.39 -0.02 0.64 16 29 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 30 H 0.15 2.48 6.28 -2.91 -0.02 2.46 16 31 H 0.13 3.50 6.20 -2.91 -0.02 3.49 16 32 H 0.42 7.30 7.70 -92.71 -0.71 6.58 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.41 10.82 6.04 -92.71 -0.56 10.26 16 37 H 0.12 2.23 7.95 -2.39 -0.02 2.21 16 38 H 0.11 2.24 7.95 -2.38 -0.02 2.22 16 39 H 0.41 12.64 8.32 -92.71 -0.77 11.87 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.15 2.96 6.73 -2.91 -0.02 2.94 16 Total: -1.00 -75.42 366.34 0.32 -75.11 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.96 Total: 33.47 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.10 Total: 18.63 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -5.78 Total: -119.49 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -1.07 Total: -50.84 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -75.42 0.32 -75.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759775905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.432 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds