Wall clock time and date at job start Tue Mar 31 2020 13:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35945 * 117.00231 * 2 1 4 4 C 1.38728 * 119.91644 * 0.02562 * 3 2 1 5 5 C 1.37899 * 120.15803 * 179.97438 * 4 3 2 6 6 C 1.39704 * 119.99229 * 0.02562 * 5 4 3 7 7 C 1.47450 * 120.08469 * 180.02562 * 6 5 4 8 8 N 1.29751 * 119.99822 * 0.02562 * 7 6 5 9 9 N 1.40105 * 120.00236 * 179.97438 * 8 7 6 10 10 C 1.46502 * 119.99725 * 0.02562 * 9 8 7 11 11 C 1.34773 * 120.00167 * 180.02562 * 9 8 7 12 12 N 1.34774 * 120.00025 * 0.02562 * 11 9 8 13 13 O 1.21607 * 119.99978 * 180.02562 * 11 9 8 14 14 C 1.39715 * 119.83342 * 359.73761 * 6 5 4 15 15 C 1.38235 * 119.83993 * 0.51945 * 14 6 5 16 16 O 1.36004 * 119.99354 * 179.75440 * 15 14 6 17 17 C 1.42903 * 116.99787 * 359.72258 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 H 1.08999 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46818 * 300.00495 * 1 2 3 29 29 H 1.09000 * 109.46876 * 60.00089 * 1 2 3 30 30 H 1.07998 * 119.92060 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.00449 * 180.02562 * 5 4 3 32 32 H 1.07996 * 120.00215 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47145 * 89.99955 * 10 9 8 34 34 H 1.08992 * 109.46970 * 210.00266 * 10 9 8 35 35 H 1.09001 * 109.46852 * 329.99819 * 10 9 8 36 36 H 0.97001 * 120.00274 * 0.02562 * 12 11 9 37 37 H 0.97002 * 120.00209 * 180.02562 * 12 11 9 38 38 H 1.07999 * 120.07631 * 180.26244 * 14 6 5 39 39 H 1.09002 * 109.47382 * 60.00075 * 17 16 15 40 40 H 1.09001 * 109.46938 * 300.00061 * 17 16 15 41 41 H 1.09001 * 109.47194 * 299.99575 * 18 17 16 42 42 H 1.08992 * 109.47399 * 59.99748 * 18 17 16 43 43 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2890 2.3737 0.0005 5 6 1.9099 3.6049 0.0011 6 6 3.3047 3.6837 0.0005 7 6 3.9708 4.9992 0.0017 8 7 3.2613 6.0855 0.0037 9 7 3.8940 7.3356 0.0053 10 6 5.3568 7.4160 0.0042 11 6 3.1571 8.4639 0.0079 12 7 1.8114 8.3899 0.0095 13 8 3.7063 9.5489 0.0089 14 6 4.0670 2.5128 0.0050 15 6 3.4374 1.2822 -0.0009 16 8 4.1764 0.1404 -0.0017 17 6 5.5978 0.2877 -0.0022 18 6 6.2537 -1.0946 -0.0037 19 6 7.7527 -0.9393 -0.0036 20 1 8.1934 0.0466 -0.0031 21 6 8.5614 -2.0560 -0.0043 22 7 8.0247 -3.2567 -0.0044 23 14 10.4195 -1.8636 -0.0050 24 1 10.9124 -1.8130 1.3950 25 1 11.0365 -3.0184 -0.7055 26 1 10.7866 -0.6063 -0.7048 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2106 2.3141 0.0005 31 1 1.3179 4.5083 0.0019 32 1 5.0491 5.0585 0.0008 33 1 5.7187 7.4378 -1.0238 34 1 5.6711 8.3236 0.5193 35 1 5.7689 6.5464 0.5162 36 1 1.3732 7.5245 0.0091 37 1 1.2809 9.2020 0.0110 38 1 5.1455 2.5691 0.0089 39 1 5.9067 0.8359 0.8878 40 1 5.9058 0.8366 -0.8922 41 1 5.9457 -1.6438 0.8861 42 1 5.9448 -1.6424 -0.8938 43 1 8.5936 -4.0423 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767909242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:50 Heat of formation + Delta-G solvation = -35.402124 kcal Electronic energy + Delta-G solvation = -25855.047262 eV Core-core repulsion = 21902.595995 eV Total energy + Delta-G solvation = -3952.451266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50259 -40.24045 -38.30759 -37.76146 -36.46989 -33.89151 -33.44637 -32.84918 -30.73672 -30.29589 -29.19033 -27.68398 -27.07545 -25.13678 -23.89132 -22.56087 -21.43950 -20.60144 -19.89039 -18.64100 -18.39098 -17.86331 -17.06372 -16.32990 -16.14862 -16.03302 -15.95280 -15.49815 -15.12857 -15.08095 -14.66331 -14.59076 -14.52621 -13.99960 -13.71701 -13.10459 -12.93569 -12.51879 -12.36043 -12.35575 -12.22564 -11.95107 -11.57830 -11.26853 -11.06923 -10.94704 -10.90690 -10.77876 -10.61972 -10.55407 -9.99821 -9.90506 -9.69123 -9.31908 -9.24972 -8.50129 -8.45209 -7.55792 -6.11644 -4.16573 0.61913 1.37804 1.98575 2.12473 2.94777 3.25726 3.26027 3.32171 3.34422 3.49623 3.69055 3.77969 4.34043 4.38506 4.64564 4.79170 4.85677 4.97686 5.07073 5.07894 5.08996 5.16542 5.24841 5.32278 5.37139 5.41926 5.42628 5.63307 5.93389 5.98704 6.12470 6.15387 6.30758 6.37981 6.54989 6.57847 6.66521 6.93322 7.18998 7.51130 7.63369 7.75451 7.78912 8.02320 8.21633 8.25191 8.89144 9.47832 10.99832 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.002875 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.419147 B = 9735.913652 C =12512.280506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.112 3.888 4 C -0.183 4.183 5 C -0.084 4.084 6 C -0.062 4.062 7 C 0.135 3.865 8 N -0.265 5.265 9 N -0.482 5.482 10 C 0.062 3.938 11 C 0.736 3.264 12 N -0.851 5.851 13 O -0.589 6.589 14 C -0.147 4.147 15 C 0.116 3.884 16 O -0.302 6.302 17 C 0.063 3.937 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.413 0.587 38 H 0.144 0.856 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.892 16.121 0.114 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.065 3.935 4 C -0.202 4.202 5 C -0.105 4.105 6 C -0.065 4.065 7 C -0.074 4.074 8 N -0.071 5.071 9 N -0.306 5.306 10 C -0.082 4.082 11 C 0.435 3.565 12 N -0.418 5.418 13 O -0.464 6.464 14 C -0.169 4.169 15 C 0.069 3.931 16 O -0.215 6.215 17 C -0.011 4.011 18 C -0.011 4.011 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.238 0.762 37 H 0.245 0.755 38 H 0.162 0.838 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.131 16.782 0.110 23.278 hybrid contribution 1.433 -0.008 0.001 1.433 sum -14.698 16.774 0.111 22.303 Atomic orbital electron populations 1.23077 0.78849 1.04033 1.00982 1.86257 1.20752 1.25866 1.88280 1.18559 0.89498 0.85202 1.00219 1.20943 0.99867 0.91301 1.08106 1.20892 0.93195 0.97132 0.99233 1.17898 0.92850 0.89329 1.06409 1.24342 0.98181 0.90288 0.94616 1.74400 1.26329 0.90992 1.15353 1.48196 1.05654 1.01783 1.74933 1.22024 0.78624 1.04437 1.03128 1.15350 0.82137 0.81993 0.76970 1.42906 1.05072 1.13146 1.80722 1.91005 1.71502 1.25210 1.58707 1.21188 1.00748 0.90045 1.04889 1.18237 0.88528 0.86984 0.99340 1.86319 1.21177 1.26771 1.87254 1.23382 0.74729 1.03456 0.99579 1.19111 0.94187 0.88837 0.98991 1.20961 0.90311 0.92890 1.52346 0.92365 1.24986 0.99096 0.95154 0.94922 1.69973 1.35489 0.97595 1.49597 0.86502 0.84946 0.77807 0.78211 1.20512 1.21068 1.19758 0.88209 0.92788 0.92780 0.84702 0.85024 0.85605 0.91619 0.88964 0.90329 0.76172 0.75526 0.83845 0.93055 0.93049 0.95343 0.95331 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.36 10.27 -34.26 -0.35 -4.71 16 3 C 0.11 1.60 6.70 -39.00 -0.26 1.34 16 4 C -0.18 -1.98 9.02 -39.52 -0.36 -2.34 16 5 C -0.08 -0.87 9.57 -39.16 -0.37 -1.24 16 6 C -0.06 -0.70 5.87 -105.05 -0.62 -1.32 16 7 C 0.14 1.34 10.15 -14.68 -0.15 1.19 16 8 N -0.26 -2.69 9.46 32.15 0.30 -2.39 16 9 N -0.48 -5.24 3.90 -72.07 -0.28 -5.52 16 10 C 0.06 0.56 9.88 59.85 0.59 1.15 16 11 C 0.74 8.74 8.67 -86.92 -0.75 7.99 16 12 N -0.85 -6.90 8.84 27.64 0.24 -6.65 16 13 O -0.59 -8.88 16.76 5.27 0.09 -8.79 16 14 C -0.15 -1.97 8.77 -39.03 -0.34 -2.31 16 15 C 0.12 1.88 6.69 -39.19 -0.26 1.61 16 16 O -0.30 -5.99 9.91 -34.44 -0.34 -6.33 16 17 C 0.06 1.26 4.68 37.16 0.17 1.43 16 18 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.53 -14.26 9.11 -34.44 -0.31 -14.57 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 23 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.14 1.06 6.27 -52.49 -0.33 0.74 16 31 H 0.13 1.10 7.54 -52.48 -0.40 0.71 16 32 H 0.13 1.03 5.91 -52.49 -0.31 0.72 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.49 16 35 H 0.08 0.56 6.19 -51.93 -0.32 0.24 16 36 H 0.41 2.77 7.87 -40.82 -0.32 2.45 16 37 H 0.41 2.52 8.93 -40.82 -0.36 2.16 16 38 H 0.14 1.78 6.29 -52.49 -0.33 1.45 16 39 H 0.05 0.96 7.65 -51.93 -0.40 0.56 16 40 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -34.22 368.68 -6.57 -40.79 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.58 Total: 1.30 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.92 Total: -3.73 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 1.00 Total: -39.88 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.60 Total: -19.83 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.22 -6.57 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767909242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.384 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds