Wall clock time and date at job start Tue Mar 31 2020 13:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35945 * 117.00231 * 2 1 4 4 C 1.38728 * 119.91644 * 0.02562 * 3 2 1 5 5 C 1.37899 * 120.15803 * 179.97438 * 4 3 2 6 6 C 1.39704 * 119.99229 * 0.02562 * 5 4 3 7 7 C 1.47450 * 120.08469 * 180.02562 * 6 5 4 8 8 N 1.29751 * 119.99822 * 0.02562 * 7 6 5 9 9 N 1.40105 * 120.00236 * 179.97438 * 8 7 6 10 10 C 1.46502 * 119.99725 * 0.02562 * 9 8 7 11 11 C 1.34773 * 120.00167 * 180.02562 * 9 8 7 12 12 N 1.34774 * 120.00025 * 0.02562 * 11 9 8 13 13 O 1.21607 * 119.99978 * 180.02562 * 11 9 8 14 14 C 1.39715 * 119.83342 * 359.73761 * 6 5 4 15 15 C 1.38235 * 119.83993 * 0.51945 * 14 6 5 16 16 O 1.36004 * 119.99354 * 179.75440 * 15 14 6 17 17 C 1.42903 * 116.99787 * 359.72258 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 H 1.08999 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46818 * 300.00495 * 1 2 3 29 29 H 1.09000 * 109.46876 * 60.00089 * 1 2 3 30 30 H 1.07998 * 119.92060 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.00449 * 180.02562 * 5 4 3 32 32 H 1.07996 * 120.00215 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47145 * 89.99955 * 10 9 8 34 34 H 1.08992 * 109.46970 * 210.00266 * 10 9 8 35 35 H 1.09001 * 109.46852 * 329.99819 * 10 9 8 36 36 H 0.97001 * 120.00274 * 0.02562 * 12 11 9 37 37 H 0.97002 * 120.00209 * 180.02562 * 12 11 9 38 38 H 1.07999 * 120.07631 * 180.26244 * 14 6 5 39 39 H 1.09002 * 109.47382 * 60.00075 * 17 16 15 40 40 H 1.09001 * 109.46938 * 300.00061 * 17 16 15 41 41 H 1.09001 * 109.47194 * 299.99575 * 18 17 16 42 42 H 1.08992 * 109.47399 * 59.99748 * 18 17 16 43 43 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2890 2.3737 0.0005 5 6 1.9099 3.6049 0.0011 6 6 3.3047 3.6837 0.0005 7 6 3.9708 4.9992 0.0017 8 7 3.2613 6.0855 0.0037 9 7 3.8940 7.3356 0.0053 10 6 5.3568 7.4160 0.0042 11 6 3.1571 8.4639 0.0079 12 7 1.8114 8.3899 0.0095 13 8 3.7063 9.5489 0.0089 14 6 4.0670 2.5128 0.0050 15 6 3.4374 1.2822 -0.0009 16 8 4.1764 0.1404 -0.0017 17 6 5.5978 0.2877 -0.0022 18 6 6.2537 -1.0946 -0.0037 19 6 7.7527 -0.9393 -0.0036 20 1 8.1934 0.0466 -0.0031 21 6 8.5614 -2.0560 -0.0043 22 7 8.0247 -3.2567 -0.0044 23 14 10.4195 -1.8636 -0.0050 24 1 10.9124 -1.8130 1.3950 25 1 11.0365 -3.0184 -0.7055 26 1 10.7866 -0.6063 -0.7048 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2106 2.3141 0.0005 31 1 1.3179 4.5083 0.0019 32 1 5.0491 5.0585 0.0008 33 1 5.7187 7.4378 -1.0238 34 1 5.6711 8.3236 0.5193 35 1 5.7689 6.5464 0.5162 36 1 1.3732 7.5245 0.0091 37 1 1.2809 9.2020 0.0110 38 1 5.1455 2.5691 0.0089 39 1 5.9067 0.8359 0.8878 40 1 5.9058 0.8366 -0.8922 41 1 5.9457 -1.6438 0.8861 42 1 5.9448 -1.6424 -0.8938 43 1 8.5936 -4.0423 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767909242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:50 Heat of formation + Delta-G solvation = -59.881796 kcal Electronic energy + Delta-G solvation = -25856.108780 eV Core-core repulsion = 21902.595995 eV Total energy + Delta-G solvation = -3953.512785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51059 -41.12039 -39.46388 -38.72722 -37.43455 -35.43560 -34.68341 -33.74473 -32.37852 -31.31154 -30.35044 -28.42822 -27.85509 -26.96101 -24.78725 -23.93671 -22.53904 -21.94891 -20.76217 -19.53989 -19.34787 -18.67515 -18.54534 -17.70090 -17.26009 -17.11285 -16.95911 -16.51411 -16.30208 -16.29708 -16.04829 -15.59779 -15.41230 -15.06034 -14.55221 -14.29512 -14.21994 -13.99371 -13.52138 -13.40708 -13.15727 -13.03410 -12.90063 -12.62120 -12.56819 -12.35945 -12.08117 -11.89380 -11.76017 -11.55415 -11.54475 -11.39096 -11.31616 -10.79521 -10.58411 -10.07159 -9.47231 -8.58049 -8.22872 -6.36212 -0.27050 0.41449 1.19582 1.23943 1.43753 1.45666 1.56625 2.08018 2.29754 2.41450 2.53821 2.77768 2.83781 3.11909 3.58646 3.80695 4.06252 4.08672 4.12341 4.25677 4.29079 4.35733 4.39825 4.43803 4.45546 4.47632 4.55497 4.74210 4.75212 4.79978 4.81882 5.16724 5.27075 5.37985 5.40885 5.53086 5.62524 5.68296 5.75852 5.87859 6.09486 6.16558 6.26878 6.72783 6.79807 7.00882 7.34004 7.46626 8.90336 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.002875 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.419147 B = 9735.913652 C =12512.280506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.098 3.902 4 C -0.171 4.171 5 C -0.072 4.072 6 C -0.061 4.061 7 C 0.136 3.864 8 N -0.262 5.262 9 N -0.486 5.486 10 C 0.057 3.943 11 C 0.727 3.273 12 N -0.834 5.834 13 O -0.627 6.627 14 C -0.143 4.143 15 C 0.070 3.930 16 O -0.334 6.334 17 C 0.082 3.918 18 C 0.028 3.972 19 C -0.542 4.542 20 H 0.075 0.925 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.257 1.257 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.417 0.583 37 H 0.422 0.578 38 H 0.149 0.851 39 H 0.065 0.935 40 H 0.065 0.935 41 H -0.005 1.005 42 H -0.005 1.005 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.454 18.424 0.113 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.051 3.949 4 C -0.190 4.190 5 C -0.092 4.092 6 C -0.064 4.064 7 C -0.073 4.073 8 N -0.068 5.068 9 N -0.309 5.309 10 C -0.087 4.087 11 C 0.426 3.574 12 N -0.402 5.402 13 O -0.506 6.506 14 C -0.164 4.164 15 C 0.025 3.975 16 O -0.249 6.249 17 C 0.007 3.993 18 C -0.009 4.009 19 C -0.580 4.580 20 H 0.093 0.907 21 C -0.198 4.198 22 N -0.572 5.572 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.180 1.180 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.256 0.744 38 H 0.166 0.834 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.749 19.094 0.110 25.399 hybrid contribution 1.401 -0.680 0.002 1.558 sum -15.347 18.414 0.112 23.971 Atomic orbital electron populations 1.23398 0.76232 1.05413 1.02769 1.86204 1.23680 1.26743 1.88520 1.18856 0.89166 0.86265 1.00645 1.21281 1.01308 0.90072 1.06312 1.21286 0.93047 0.97957 0.96906 1.17973 0.93318 0.89199 1.05880 1.24353 0.99111 0.89535 0.94334 1.74352 1.26368 0.90789 1.15256 1.48254 1.06314 1.01720 1.74636 1.22161 0.77854 1.04992 1.03741 1.15588 0.83050 0.81707 0.77017 1.42792 1.03915 1.14194 1.79261 1.90977 1.72428 1.26619 1.60561 1.21252 1.01195 0.89793 1.04210 1.18645 0.89297 0.86664 1.02942 1.86214 1.20539 1.29395 1.88787 1.22901 0.75667 0.99865 1.00828 1.18947 0.94732 0.91501 0.95758 1.21424 0.91101 0.93722 1.51708 0.90700 1.26042 1.04757 0.94699 0.94327 1.70129 1.37599 0.98633 1.50872 0.85309 0.78074 0.78249 0.78580 1.19669 1.21010 1.18039 0.87309 0.90881 0.90881 0.81381 0.82295 0.83827 0.91019 0.89771 0.88380 0.75132 0.74411 0.83357 0.91665 0.91703 0.98673 0.98660 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -9.90 10.27 -78.89 -0.81 -10.71 16 3 C 0.10 2.72 6.70 22.64 0.15 2.87 16 4 C -0.17 -3.22 9.02 22.31 0.20 -3.02 16 5 C -0.07 -1.24 9.57 22.54 0.22 -1.02 16 6 C -0.06 -1.21 5.87 -20.14 -0.12 -1.33 16 7 C 0.14 2.28 10.15 87.43 0.89 3.17 16 8 N -0.26 -4.50 9.46 -52.19 -0.49 -4.99 16 9 N -0.49 -9.46 3.90 -500.18 -1.95 -11.41 16 10 C 0.06 0.91 9.88 127.77 1.26 2.17 16 11 C 0.73 16.01 8.67 179.06 1.55 17.56 16 12 N -0.83 -11.54 8.84 -184.73 -1.63 -13.18 16 13 O -0.63 -18.41 16.76 -4.05 -0.07 -18.48 16 14 C -0.14 -3.66 8.77 22.63 0.20 -3.46 16 15 C 0.07 2.28 6.69 22.53 0.15 2.43 16 16 O -0.33 -13.87 9.91 -79.55 -0.79 -14.66 16 17 C 0.08 3.38 4.68 71.98 0.34 3.72 16 18 C 0.03 1.50 5.34 29.85 0.16 1.66 16 19 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 20 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 21 C 0.00 0.00 5.46 84.66 0.46 0.47 16 22 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 23 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 29 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 30 H 0.17 1.95 6.27 -2.91 -0.02 1.93 16 31 H 0.16 1.90 7.54 -2.91 -0.02 1.88 16 32 H 0.14 1.89 5.91 -2.91 -0.02 1.88 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.50 7.42 -2.39 -0.02 1.49 16 35 H 0.10 1.14 6.19 -2.39 -0.01 1.13 16 36 H 0.42 4.36 7.87 -92.71 -0.73 3.63 16 37 H 0.42 4.26 8.93 -92.71 -0.83 3.43 16 38 H 0.15 3.50 6.29 -2.91 -0.02 3.48 16 39 H 0.07 2.46 7.65 -2.39 -0.02 2.44 16 40 H 0.06 2.45 7.67 -2.39 -0.02 2.43 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -77.62 368.68 2.89 -74.74 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.49 Total: 13.13 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 6.81 Total: -2.96 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.79 Total: -85.80 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.67 Total: -43.85 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.62 2.89 -74.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767909242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.855 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds