Wall clock time and date at job start Tue Mar 31 2020 12:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47233 * 2 1 4 4 C 1.46500 * 119.99703 * 269.99831 * 3 2 1 5 5 C 1.50697 * 109.47157 * 269.99753 * 4 3 2 6 6 H 1.08000 * 119.99923 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99855 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99644 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00265 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47105 * 90.00229 * 9 7 5 11 11 H 1.48497 * 109.47284 * 210.00218 * 9 7 5 12 12 H 1.48501 * 109.47053 * 330.00161 * 9 7 5 13 13 C 1.34779 * 120.00263 * 89.99655 * 3 2 1 14 14 O 1.21281 * 119.99818 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99628 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.46925 * 179.97438 * 15 13 3 17 17 C 1.34708 * 117.00304 * 180.02562 * 16 15 13 18 18 O 1.21473 * 119.99711 * 359.97438 * 17 16 15 19 19 C 1.47710 * 120.00198 * 180.02562 * 17 16 15 20 20 C 1.40016 * 120.94302 * 353.93554 * 19 17 16 21 21 N 1.32127 * 118.91501 * 179.73017 * 20 19 17 22 22 C 1.31889 * 120.97441 * 359.97438 * 21 20 19 23 23 C 1.50694 * 118.94837 * 180.02562 * 22 21 20 24 24 N 1.31866 * 122.10424 * 0.02760 * 22 21 20 25 25 C 1.32145 * 120.97762 * 359.95285 * 24 22 21 26 26 C 1.50691 * 120.54645 * 180.02562 * 25 24 22 27 27 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47367 * 300.00025 * 1 2 3 29 29 H 1.09001 * 109.47197 * 60.00544 * 1 2 3 30 30 H 1.08999 * 109.47459 * 239.99359 * 2 1 3 31 31 H 1.09004 * 109.46897 * 119.99878 * 2 1 3 32 32 H 1.08995 * 109.47282 * 30.00364 * 4 3 2 33 33 H 1.09004 * 109.47199 * 149.99871 * 4 3 2 34 34 H 0.97004 * 119.99656 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46794 * 60.00493 * 15 13 3 36 36 H 1.08995 * 109.47440 * 299.99685 * 15 13 3 37 37 H 1.08000 * 120.54818 * 359.74739 * 20 19 17 38 38 H 1.09006 * 109.47001 * 90.00361 * 23 22 21 39 39 H 1.09002 * 109.47663 * 209.99983 * 23 22 21 40 40 H 1.08997 * 109.47276 * 329.99967 * 23 22 21 41 41 H 1.09003 * 109.47121 * 263.68382 * 26 25 24 42 42 H 1.09007 * 109.47166 * 23.68150 * 26 25 24 43 43 H 1.09001 * 109.47465 * 143.67537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 5.3918 2.1841 -3.2568 9 14 3.0132 3.4358 -3.9288 10 1 3.1158 4.8559 -3.5071 11 1 3.4068 3.3134 -5.3554 12 1 1.6136 2.9690 -3.7598 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9922 1.3060 2.4723 16 8 2.3072 2.1955 3.5759 17 6 2.1365 1.7098 4.8207 18 8 1.7351 0.5744 4.9799 19 6 2.4364 2.5582 5.9921 20 6 3.0169 3.8227 5.8355 21 7 3.2631 4.5502 6.9106 22 6 2.9699 4.1013 8.1156 23 6 3.2698 4.9696 9.3103 24 7 2.4228 2.9171 8.3085 25 6 2.1422 2.1235 7.2899 26 6 1.5165 0.7723 7.5214 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 5.7178 2.5745 -4.0828 35 1 2.6228 0.4188 2.5299 36 1 0.9444 1.0115 2.5302 37 1 3.2592 4.1974 4.8520 38 1 2.4070 5.5993 9.5275 39 1 3.4856 4.3390 10.1728 40 1 4.1336 5.5984 9.0948 41 1 2.2947 0.0092 7.5357 42 1 0.9916 0.7739 8.4768 43 1 0.8105 0.5565 6.7195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777184882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:46 Heat of formation + Delta-G solvation = -65.071966 kcal Electronic energy + Delta-G solvation = -26597.571212 eV Core-core repulsion = 22643.833364 eV Total energy + Delta-G solvation = -3953.737847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.72869 -40.39598 -39.10075 -36.73291 -35.49579 -34.75166 -33.93495 -32.80049 -30.53992 -29.90990 -29.52379 -28.74926 -26.96801 -24.37777 -23.22657 -23.09915 -22.31733 -21.42123 -18.84684 -18.63384 -17.75493 -17.10638 -16.85347 -16.72516 -16.33435 -16.11603 -15.73063 -15.42454 -14.73074 -14.17144 -13.97063 -13.84921 -13.62674 -13.53000 -13.41601 -12.97917 -12.81908 -12.79369 -12.72144 -12.63347 -12.45786 -12.25780 -11.94738 -11.86753 -11.51756 -11.08917 -10.98830 -10.90558 -10.69160 -10.56478 -10.45776 -10.21480 -9.86626 -9.65742 -9.60419 -9.19365 -8.63455 -7.88640 -6.13230 -4.12876 -0.03037 0.67867 2.15934 2.18941 3.08465 3.25980 3.31710 3.31980 3.33910 3.43152 3.63244 3.67647 4.01796 4.35154 4.36111 4.56459 4.69145 4.76740 5.00686 5.07201 5.09332 5.13388 5.19870 5.23759 5.24344 5.32299 5.41693 5.43927 5.55270 5.60133 5.74429 5.87411 5.97053 6.05390 6.15748 6.30218 6.55370 6.60487 6.84793 7.17867 7.43283 7.54186 7.64654 8.04152 8.39786 8.74200 8.89914 9.46126 11.00008 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002784 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.592858 B =10055.340344 C =11098.028266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.517 6.517 15 C 0.053 3.947 16 O -0.324 6.324 17 C 0.522 3.478 18 O -0.498 6.498 19 C -0.246 4.246 20 C 0.221 3.779 21 N -0.529 5.529 22 C 0.348 3.652 23 C -0.090 4.090 24 N -0.528 5.528 25 C 0.246 3.754 26 C -0.115 4.115 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.191 0.809 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -2.274 21.219 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.024 4.024 16 O -0.238 6.238 17 C 0.365 3.635 18 O -0.388 6.388 19 C -0.251 4.251 20 C 0.055 3.945 21 N -0.244 5.244 22 C 0.083 3.917 23 C -0.148 4.148 24 N -0.244 5.244 25 C 0.100 3.900 26 C -0.172 4.172 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.207 0.793 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.454 -1.365 21.860 23.855 hybrid contribution -0.588 -0.216 -1.583 1.703 sum -10.042 -1.581 20.277 22.682 Atomic orbital electron populations 1.22246 0.96446 1.01925 1.02337 1.21554 0.93671 0.83521 1.03564 1.47872 1.64119 1.13561 1.06441 1.19712 0.97569 0.93442 0.79465 1.21302 0.95234 1.33180 1.07310 0.90686 1.24855 0.95011 0.95750 0.97330 1.69898 1.15104 1.44821 1.23561 0.86851 0.81391 0.81642 0.79809 1.19830 1.21022 1.19052 1.19682 0.79520 0.87132 0.84270 1.90722 1.44271 1.17561 1.86720 1.22995 1.03015 0.92592 0.83838 1.86569 1.78570 1.44811 1.13892 1.20547 0.74613 0.85277 0.83056 1.90798 1.42667 1.18915 1.86414 1.20704 1.12026 0.99025 0.93382 1.23929 0.84355 0.87285 0.98947 1.68455 1.20717 1.36282 0.98960 1.23675 0.86082 0.88710 0.93241 1.20683 1.03752 0.98059 0.92309 1.68327 1.16030 1.05680 1.34371 1.21997 0.86278 0.95448 0.86323 1.21146 1.01902 0.89678 1.04436 0.91640 0.93039 0.91949 0.89115 0.91345 0.94844 0.94385 0.92478 0.88135 0.88358 0.79250 0.88973 0.89211 0.89025 0.88750 0.90142 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 2 C 0.10 1.45 5.93 -4.04 -0.02 1.43 16 3 N -0.59 -11.44 2.46 -175.06 -0.43 -11.87 16 4 C 0.22 5.13 4.23 -5.19 -0.02 5.11 16 5 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 6 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.10 5.47 -17.81 -0.10 2.00 16 8 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 9 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 13 C 0.51 10.02 7.75 -10.98 -0.09 9.93 16 14 O -0.52 -12.45 16.08 -14.10 -0.23 -12.68 16 15 C 0.05 0.78 4.51 36.01 0.16 0.94 16 16 O -0.32 -4.93 9.13 -47.19 -0.43 -5.36 16 17 C 0.52 6.97 7.85 34.60 0.27 7.24 16 18 O -0.50 -6.74 13.32 -19.25 -0.26 -7.00 16 19 C -0.25 -3.01 5.91 -104.71 -0.62 -3.62 16 20 C 0.22 2.68 10.90 -16.76 -0.18 2.50 16 21 N -0.53 -6.36 10.31 -10.38 -0.11 -6.46 16 22 C 0.35 3.72 7.64 -157.06 -1.20 2.52 16 23 C -0.09 -0.60 10.31 36.00 0.37 -0.23 16 24 N -0.53 -5.94 10.25 -6.66 -0.07 -6.01 16 25 C 0.25 2.78 6.87 -81.81 -0.56 2.22 16 26 C -0.11 -1.04 9.00 36.00 0.32 -0.72 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.10 1.34 7.40 -51.93 -0.38 0.95 16 36 H 0.10 1.20 7.18 -51.93 -0.37 0.83 16 37 H 0.19 2.18 7.73 -52.49 -0.41 1.77 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.11 1.03 5.95 -51.93 -0.31 0.72 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -34.86 367.61 -7.37 -42.23 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.88 Total: -0.85 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -1.62 Total: 12.47 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.17 Total: -50.82 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.91 Total: -25.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -7.37 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777184882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.837 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds