Wall clock time and date at job start Tue Mar 31 2020 12:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47233 * 2 1 4 4 C 1.46500 * 119.99703 * 269.99831 * 3 2 1 5 5 C 1.50697 * 109.47157 * 269.99753 * 4 3 2 6 6 H 1.08000 * 119.99923 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99855 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99644 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00265 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47105 * 90.00229 * 9 7 5 11 11 H 1.48497 * 109.47284 * 210.00218 * 9 7 5 12 12 H 1.48501 * 109.47053 * 330.00161 * 9 7 5 13 13 C 1.34779 * 120.00263 * 89.99655 * 3 2 1 14 14 O 1.21281 * 119.99818 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99628 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.46925 * 179.97438 * 15 13 3 17 17 C 1.34708 * 117.00304 * 180.02562 * 16 15 13 18 18 O 1.21473 * 119.99711 * 359.97438 * 17 16 15 19 19 C 1.47710 * 120.00198 * 180.02562 * 17 16 15 20 20 C 1.40016 * 120.94302 * 353.93554 * 19 17 16 21 21 N 1.32127 * 118.91501 * 179.73017 * 20 19 17 22 22 C 1.31889 * 120.97441 * 359.97438 * 21 20 19 23 23 C 1.50694 * 118.94837 * 180.02562 * 22 21 20 24 24 N 1.31866 * 122.10424 * 0.02760 * 22 21 20 25 25 C 1.32145 * 120.97762 * 359.95285 * 24 22 21 26 26 C 1.50691 * 120.54645 * 180.02562 * 25 24 22 27 27 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47367 * 300.00025 * 1 2 3 29 29 H 1.09001 * 109.47197 * 60.00544 * 1 2 3 30 30 H 1.08999 * 109.47459 * 239.99359 * 2 1 3 31 31 H 1.09004 * 109.46897 * 119.99878 * 2 1 3 32 32 H 1.08995 * 109.47282 * 30.00364 * 4 3 2 33 33 H 1.09004 * 109.47199 * 149.99871 * 4 3 2 34 34 H 0.97004 * 119.99656 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46794 * 60.00493 * 15 13 3 36 36 H 1.08995 * 109.47440 * 299.99685 * 15 13 3 37 37 H 1.08000 * 120.54818 * 359.74739 * 20 19 17 38 38 H 1.09006 * 109.47001 * 90.00361 * 23 22 21 39 39 H 1.09002 * 109.47663 * 209.99983 * 23 22 21 40 40 H 1.08997 * 109.47276 * 329.99967 * 23 22 21 41 41 H 1.09003 * 109.47121 * 263.68382 * 26 25 24 42 42 H 1.09007 * 109.47166 * 23.68150 * 26 25 24 43 43 H 1.09001 * 109.47465 * 143.67537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 5.3918 2.1841 -3.2568 9 14 3.0132 3.4358 -3.9288 10 1 3.1158 4.8559 -3.5071 11 1 3.4068 3.3134 -5.3554 12 1 1.6136 2.9690 -3.7598 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9922 1.3060 2.4723 16 8 2.3072 2.1955 3.5759 17 6 2.1365 1.7098 4.8207 18 8 1.7351 0.5744 4.9799 19 6 2.4364 2.5582 5.9921 20 6 3.0169 3.8227 5.8355 21 7 3.2631 4.5502 6.9106 22 6 2.9699 4.1013 8.1156 23 6 3.2698 4.9696 9.3103 24 7 2.4228 2.9171 8.3085 25 6 2.1422 2.1235 7.2899 26 6 1.5165 0.7723 7.5214 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 5.7178 2.5745 -4.0828 35 1 2.6228 0.4188 2.5299 36 1 0.9444 1.0115 2.5302 37 1 3.2592 4.1974 4.8520 38 1 2.4070 5.5993 9.5275 39 1 3.4856 4.3390 10.1728 40 1 4.1336 5.5984 9.0948 41 1 2.2947 0.0092 7.5357 42 1 0.9916 0.7739 8.4768 43 1 0.8105 0.5565 6.7195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777184882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:45 Heat of formation + Delta-G solvation = -87.394471 kcal Electronic energy + Delta-G solvation = -26598.539188 eV Core-core repulsion = 22643.833364 eV Total energy + Delta-G solvation = -3954.705824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63236 -41.52116 -40.54021 -37.85600 -37.03530 -35.61466 -34.89714 -34.74900 -32.07152 -31.00109 -30.25718 -29.87810 -28.52597 -25.28395 -24.57876 -24.27355 -23.65891 -22.45062 -20.29181 -19.62919 -19.14150 -18.80193 -18.09792 -17.87831 -17.59207 -17.03667 -16.97767 -16.66099 -16.24973 -15.77713 -15.11701 -14.82169 -14.76855 -14.59509 -14.37360 -14.20925 -14.04746 -13.98608 -13.74762 -13.51804 -13.39865 -13.33727 -13.22063 -13.17222 -12.80497 -12.56443 -12.42385 -12.16052 -12.02252 -11.81944 -11.74758 -11.74269 -11.43412 -10.83654 -10.79971 -10.73178 -10.53133 -9.52873 -8.34216 -6.39719 -0.92091 -0.20845 1.04069 1.18801 1.33735 1.37777 1.45660 1.57519 2.27015 2.31107 2.44622 2.70934 2.81299 3.00254 3.15031 3.34747 3.41927 3.64563 3.89016 3.96415 4.01590 4.15413 4.34462 4.37635 4.59686 4.61774 4.62666 4.67877 4.75987 4.77264 4.85065 4.86787 4.94308 4.97882 5.00616 5.19131 5.31687 5.37711 5.44920 5.56243 5.68676 6.20736 6.36676 6.55180 6.62189 6.79027 7.15230 7.28500 8.82653 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002784 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.592858 B =10055.340344 C =11098.028266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.235 1.235 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.063 3.937 16 O -0.342 6.342 17 C 0.527 3.473 18 O -0.499 6.499 19 C -0.259 4.259 20 C 0.216 3.784 21 N -0.545 5.545 22 C 0.343 3.657 23 C -0.088 4.088 24 N -0.534 5.534 25 C 0.245 3.755 26 C -0.110 4.110 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.187 0.813 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 -2.998 22.562 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.158 1.158 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.013 4.013 16 O -0.258 6.258 17 C 0.371 3.629 18 O -0.389 6.389 19 C -0.265 4.265 20 C 0.050 3.950 21 N -0.261 5.261 22 C 0.079 3.921 23 C -0.146 4.146 24 N -0.250 5.250 25 C 0.099 3.901 26 C -0.167 4.167 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.204 0.796 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.927 -2.150 23.230 26.202 hybrid contribution 0.253 -0.037 -1.886 1.903 sum -11.674 -2.186 21.345 24.427 Atomic orbital electron populations 1.22183 0.93662 1.03940 1.02297 1.21909 0.95889 0.80686 1.04516 1.47961 1.63846 1.15363 1.05238 1.19375 0.95035 0.93192 0.81984 1.21547 0.97034 1.32191 1.06787 0.95170 1.25850 0.96694 0.97171 0.98981 1.70054 1.17442 1.46538 1.24498 0.85732 0.80583 0.79008 0.77745 1.20242 1.20138 1.15813 1.20525 0.78136 0.86695 0.85855 1.90687 1.46767 1.20142 1.87717 1.22910 1.05313 0.91798 0.81292 1.86564 1.79095 1.45480 1.14636 1.20610 0.74367 0.85374 0.82547 1.90789 1.42905 1.18873 1.86293 1.20683 1.13268 0.99091 0.93451 1.23950 0.84365 0.87536 0.99153 1.68519 1.21513 1.36608 0.99431 1.24466 0.84868 0.88947 0.93869 1.20856 1.04693 0.97974 0.91051 1.68451 1.16480 1.05936 1.34101 1.22381 0.85633 0.96211 0.85923 1.21173 1.01890 0.88494 1.05115 0.88537 0.92083 0.93015 0.90114 0.88594 0.92648 0.96071 0.92262 0.86315 0.85036 0.79603 0.87304 0.87772 0.88281 0.88059 0.88480 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.52 16 2 C 0.09 2.47 5.93 86.38 0.51 2.98 16 3 N -0.59 -22.81 2.46 -826.16 -2.03 -24.84 16 4 C 0.23 10.64 4.23 85.63 0.36 11.00 16 5 C -0.54 -31.00 9.94 25.60 0.25 -30.75 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.65 5.47 84.65 0.46 1.11 16 8 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 9 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.61 6.54 99.48 0.65 -8.95 16 13 C 0.50 19.71 7.75 87.66 0.68 20.39 16 14 O -0.57 -28.50 16.08 15.76 0.25 -28.25 16 15 C 0.06 1.77 4.51 71.24 0.32 2.09 16 16 O -0.34 -10.28 9.13 -49.79 -0.45 -10.73 16 17 C 0.53 13.57 7.85 70.33 0.55 14.12 16 18 O -0.50 -12.53 13.32 19.92 0.27 -12.26 16 19 C -0.26 -6.21 5.91 -19.92 -0.12 -6.33 16 20 C 0.22 5.30 10.90 85.08 0.93 6.23 16 21 N -0.55 -12.93 10.31 -186.75 -1.93 -14.86 16 22 C 0.34 6.92 7.64 138.70 1.06 7.98 16 23 C -0.09 -1.00 10.31 71.23 0.73 -0.26 16 24 N -0.53 -11.23 10.25 -175.00 -1.79 -13.02 16 25 C 0.24 5.24 6.87 42.93 0.29 5.53 16 26 C -0.11 -1.79 9.00 71.23 0.64 -1.15 16 27 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.12 7.22 -2.39 -0.02 1.10 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 31 H 0.10 2.04 6.44 -2.38 -0.02 2.03 16 32 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 33 H 0.02 1.07 6.85 -2.39 -0.02 1.06 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.12 2.90 7.40 -2.39 -0.02 2.88 16 36 H 0.13 2.80 7.18 -2.39 -0.02 2.79 16 37 H 0.19 4.53 7.73 -2.91 -0.02 4.50 16 38 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.10 1.77 5.95 -2.39 -0.01 1.75 16 Total: -1.00 -79.09 367.61 4.90 -74.19 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.98 Total: 12.83 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 7.42 Total: 30.43 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -5.45 Total: -111.81 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: 0.06 Total: -51.24 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -79.09 4.90 -74.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777184882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.205 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds