Wall clock time and date at job start Tue Mar 31 2020 13:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47130 * 2 1 4 4 C 1.34652 * 117.00174 * 179.97438 * 3 2 1 5 5 O 1.21519 * 120.00156 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99901 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00263 * 5.00525 * 6 4 3 8 8 C 1.40134 * 120.00254 * 185.00466 * 6 4 3 9 9 C 1.38849 * 120.00130 * 294.75557 * 8 6 4 10 10 C 1.38062 * 120.00196 * 180.27492 * 9 8 6 11 11 C 1.38859 * 119.99938 * 359.44120 * 10 9 8 12 12 N 1.40122 * 120.00332 * 180.25631 * 11 10 9 13 13 C 1.34783 * 119.99805 * 35.40183 * 12 11 10 14 14 O 1.21594 * 120.00029 * 355.47162 * 13 12 11 15 15 N 1.34773 * 120.00062 * 175.45957 * 13 12 11 16 16 C 1.46494 * 120.00452 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47766 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99505 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00240 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00282 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47381 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47631 * 119.99592 * 21 19 17 24 24 H 1.48497 * 109.47384 * 239.99457 * 21 19 17 25 25 C 1.38850 * 119.99518 * 0.57777 * 11 10 9 26 26 C 1.38064 * 120.00279 * 359.70068 * 25 11 10 27 27 H 1.09001 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47638 * 299.99741 * 1 2 3 29 29 H 1.09006 * 109.47194 * 60.00672 * 1 2 3 30 30 H 1.09002 * 109.47564 * 239.99970 * 2 1 3 31 31 H 1.09001 * 109.46852 * 119.99962 * 2 1 3 32 32 H 1.09000 * 109.47367 * 270.00392 * 7 6 4 33 33 H 1.09002 * 109.47238 * 30.00092 * 7 6 4 34 34 H 1.09000 * 109.47346 * 150.00038 * 7 6 4 35 35 H 1.07997 * 120.00265 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.00447 * 179.71872 * 10 9 8 37 37 H 0.96994 * 120.00319 * 215.40106 * 12 11 10 38 38 H 0.97006 * 120.00080 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.47524 * 300.00887 * 16 15 13 40 40 H 1.09001 * 109.47028 * 60.00598 * 16 15 13 41 41 H 0.96999 * 120.00410 * 180.02562 * 20 19 17 42 42 H 1.08004 * 119.99866 * 179.67947 * 25 11 10 43 43 H 1.08005 * 119.99864 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5455 0.0005 5 8 4.0892 0.5818 0.0015 6 7 3.8639 2.7909 0.0011 7 6 2.9760 3.9508 0.1118 8 6 5.2489 2.9764 -0.1042 9 6 6.0879 2.5328 0.9093 10 6 7.4519 2.7207 0.8082 11 6 7.9859 3.3429 -0.3125 12 7 9.3707 3.5288 -0.4176 13 6 10.2146 2.5984 0.0713 14 8 9.7770 1.6386 0.6761 15 7 11.5433 2.7319 -0.1103 16 6 12.4605 1.7205 0.4205 17 6 13.8790 2.1028 0.0847 18 1 14.0774 3.0084 -0.4693 19 6 14.9234 1.2959 0.4837 20 7 14.6817 0.1928 1.1578 21 14 16.6816 1.7702 0.0680 22 1 16.6839 3.0469 -0.6904 23 1 17.4590 1.9376 1.3222 24 1 17.3000 0.7028 -0.7587 25 6 7.1469 3.7868 -1.3258 26 6 5.7823 3.6041 -1.2220 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.6732 4.2730 -0.8845 33 1 2.0927 3.6784 0.6896 34 1 3.5012 4.7640 0.6127 35 1 5.6731 2.0451 1.7791 36 1 8.1041 2.3797 1.5987 37 1 9.7221 4.3269 -0.8423 38 1 11.8924 3.4977 -0.5927 39 1 12.3475 1.6598 1.5030 40 1 12.2301 0.7521 -0.0236 41 1 15.4165 -0.3747 1.4389 42 1 7.5617 4.2754 -2.1951 43 1 5.1297 3.9498 -2.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785737708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:00 Heat of formation + Delta-G solvation = -71.558759 kcal Electronic energy + Delta-G solvation = -25888.687456 eV Core-core repulsion = 21934.668320 eV Total energy + Delta-G solvation = -3954.019136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01696 -40.10545 -38.71693 -36.94938 -35.84313 -34.29366 -33.92962 -32.35026 -31.90580 -30.94334 -29.12786 -27.26235 -26.70279 -24.16112 -23.07284 -22.85577 -22.19790 -20.77162 -20.20060 -18.42098 -18.22466 -17.69598 -17.41462 -16.99800 -16.03861 -15.97411 -15.47622 -14.93365 -14.78466 -14.33963 -14.19051 -14.06485 -13.85028 -13.51899 -13.40928 -13.16504 -13.10240 -12.89833 -12.66131 -12.38549 -12.21514 -12.01620 -11.93939 -11.90319 -11.41369 -10.95518 -10.94220 -10.78639 -10.70735 -10.33135 -10.11158 -9.46861 -9.39245 -9.28796 -8.86644 -8.77181 -8.07718 -7.69080 -6.17834 -4.24963 1.19682 1.44666 1.88057 2.60239 3.13075 3.23034 3.30641 3.33657 3.51193 3.67204 3.98656 4.30605 4.61264 4.64377 4.81171 4.85432 4.93416 4.96540 4.97675 5.10272 5.18469 5.19136 5.36764 5.40431 5.42212 5.48434 5.57630 5.64439 5.82185 6.01976 6.04511 6.36286 6.42811 6.61792 6.67486 7.00567 7.02810 7.18305 7.39101 7.48696 7.51558 7.80788 7.97511 8.09942 8.67343 8.82282 9.17837 9.42187 10.92338 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.002047 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.319114 B =13673.876253 C =14372.549305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 O -0.369 6.369 4 C 0.647 3.353 5 O -0.552 6.552 6 N -0.551 5.551 7 C 0.087 3.913 8 C 0.115 3.885 9 C -0.078 4.078 10 C -0.110 4.110 11 C 0.187 3.813 12 N -0.696 5.696 13 C 0.689 3.311 14 O -0.580 6.580 15 N -0.721 5.721 16 C 0.265 3.735 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.063 3.937 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.146 4.146 26 C -0.096 4.096 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.149 0.851 37 H 0.404 0.596 38 H 0.389 0.611 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.130 0.870 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.131 9.762 -4.128 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.005 3.995 3 O -0.284 6.284 4 C 0.402 3.598 5 O -0.438 6.438 6 N -0.287 5.287 7 C -0.055 4.055 8 C 0.025 3.975 9 C -0.098 4.098 10 C -0.132 4.132 11 C 0.090 3.910 12 N -0.344 5.344 13 C 0.390 3.610 14 O -0.457 6.457 15 N -0.373 5.373 16 C 0.144 3.856 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.167 4.167 26 C -0.117 4.117 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.167 0.833 37 H 0.239 0.761 38 H 0.221 0.779 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.149 8.282 -3.463 28.595 hybrid contribution 1.321 0.771 -0.699 1.682 sum -25.828 9.054 -4.162 27.684 Atomic orbital electron populations 1.21822 0.92479 1.03131 1.03439 1.22988 0.94766 0.78657 1.03062 1.86221 1.21865 1.33295 1.87007 1.18062 0.81235 0.83921 0.76625 1.91080 1.59653 1.39049 1.54054 1.43858 1.05171 1.03967 1.75732 1.21848 0.93882 0.87532 1.02258 1.17208 0.80299 1.04263 0.95773 1.21068 0.92859 0.98096 0.97818 1.21323 0.94284 0.99613 0.97934 1.17632 0.82288 0.97676 0.93399 1.42875 1.03722 1.24046 1.63774 1.16178 0.82034 0.82468 0.80352 1.90901 1.76382 1.32278 1.46152 1.45774 1.03531 1.28832 1.59125 1.19070 0.85783 0.86057 0.94684 1.21239 0.90472 1.08998 1.37472 0.91815 1.24949 0.99649 0.94705 0.94739 1.69986 1.32410 1.12819 1.36911 0.86339 0.83749 0.78484 0.78178 1.19663 1.20788 1.20797 1.20698 0.92608 1.05371 0.98055 1.20799 0.94556 1.00342 0.95973 0.89939 0.91487 0.91503 0.91047 0.91022 0.92253 0.90231 0.90388 0.85799 0.83325 0.76120 0.77898 0.95442 0.95449 0.92444 0.85236 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.08 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -3.96 9.10 -40.36 -0.37 -4.33 16 4 C 0.65 8.73 8.26 54.05 0.45 9.18 16 5 O -0.55 -9.60 15.62 -19.29 -0.30 -9.90 16 6 N -0.55 -6.36 2.94 -126.24 -0.37 -6.73 16 7 C 0.09 0.62 10.28 59.85 0.62 1.23 16 8 C 0.11 1.50 4.90 -83.61 -0.41 1.09 16 9 C -0.08 -1.16 9.20 -39.42 -0.36 -1.52 16 10 C -0.11 -1.81 8.69 -39.42 -0.34 -2.15 16 11 C 0.19 2.79 6.30 -83.61 -0.53 2.26 16 12 N -0.70 -10.51 5.35 -14.18 -0.08 -10.59 16 13 C 0.69 14.04 8.41 -86.92 -0.73 13.31 16 14 O -0.58 -14.23 13.80 5.28 0.07 -14.16 16 15 N -0.72 -15.05 5.55 -66.42 -0.37 -15.42 16 16 C 0.26 7.00 5.43 -5.20 -0.03 6.98 16 17 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 18 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 21 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.15 -1.74 9.96 -39.42 -0.39 -2.13 16 26 C -0.10 -1.11 9.81 -39.42 -0.39 -1.49 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.50 7.46 -51.93 -0.39 0.11 16 34 H 0.08 0.46 8.05 -51.93 -0.42 0.05 16 35 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.15 2.78 6.24 -52.49 -0.33 2.45 16 37 H 0.40 4.51 8.84 -40.82 -0.36 4.15 16 38 H 0.39 6.78 8.34 -40.82 -0.34 6.44 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -35.75 373.08 -8.01 -43.76 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.02 Total: 7.33 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -1.92 Total: 13.96 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.08 Total: -58.03 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.60 Total: -28.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.75 -8.01 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785737708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.800 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds