Wall clock time and date at job start Tue Mar 31 2020 13:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47130 * 2 1 4 4 C 1.34652 * 117.00174 * 179.97438 * 3 2 1 5 5 O 1.21519 * 120.00156 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99901 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00263 * 5.00525 * 6 4 3 8 8 C 1.40134 * 120.00254 * 185.00466 * 6 4 3 9 9 C 1.38849 * 120.00130 * 294.75557 * 8 6 4 10 10 C 1.38062 * 120.00196 * 180.27492 * 9 8 6 11 11 C 1.38859 * 119.99938 * 359.44120 * 10 9 8 12 12 N 1.40122 * 120.00332 * 180.25631 * 11 10 9 13 13 C 1.34783 * 119.99805 * 35.40183 * 12 11 10 14 14 O 1.21594 * 120.00029 * 355.47162 * 13 12 11 15 15 N 1.34773 * 120.00062 * 175.45957 * 13 12 11 16 16 C 1.46494 * 120.00452 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47766 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99505 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00240 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00282 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47381 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47631 * 119.99592 * 21 19 17 24 24 H 1.48497 * 109.47384 * 239.99457 * 21 19 17 25 25 C 1.38850 * 119.99518 * 0.57777 * 11 10 9 26 26 C 1.38064 * 120.00279 * 359.70068 * 25 11 10 27 27 H 1.09001 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47638 * 299.99741 * 1 2 3 29 29 H 1.09006 * 109.47194 * 60.00672 * 1 2 3 30 30 H 1.09002 * 109.47564 * 239.99970 * 2 1 3 31 31 H 1.09001 * 109.46852 * 119.99962 * 2 1 3 32 32 H 1.09000 * 109.47367 * 270.00392 * 7 6 4 33 33 H 1.09002 * 109.47238 * 30.00092 * 7 6 4 34 34 H 1.09000 * 109.47346 * 150.00038 * 7 6 4 35 35 H 1.07997 * 120.00265 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.00447 * 179.71872 * 10 9 8 37 37 H 0.96994 * 120.00319 * 215.40106 * 12 11 10 38 38 H 0.97006 * 120.00080 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.47524 * 300.00887 * 16 15 13 40 40 H 1.09001 * 109.47028 * 60.00598 * 16 15 13 41 41 H 0.96999 * 120.00410 * 180.02562 * 20 19 17 42 42 H 1.08004 * 119.99866 * 179.67947 * 25 11 10 43 43 H 1.08005 * 119.99864 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5455 0.0005 5 8 4.0892 0.5818 0.0015 6 7 3.8639 2.7909 0.0011 7 6 2.9760 3.9508 0.1118 8 6 5.2489 2.9764 -0.1042 9 6 6.0879 2.5328 0.9093 10 6 7.4519 2.7207 0.8082 11 6 7.9859 3.3429 -0.3125 12 7 9.3707 3.5288 -0.4176 13 6 10.2146 2.5984 0.0713 14 8 9.7770 1.6386 0.6761 15 7 11.5433 2.7319 -0.1103 16 6 12.4605 1.7205 0.4205 17 6 13.8790 2.1028 0.0847 18 1 14.0774 3.0084 -0.4693 19 6 14.9234 1.2959 0.4837 20 7 14.6817 0.1928 1.1578 21 14 16.6816 1.7702 0.0680 22 1 16.6839 3.0469 -0.6904 23 1 17.4590 1.9376 1.3222 24 1 17.3000 0.7028 -0.7587 25 6 7.1469 3.7868 -1.3258 26 6 5.7823 3.6041 -1.2220 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.6732 4.2730 -0.8845 33 1 2.0927 3.6784 0.6896 34 1 3.5012 4.7640 0.6127 35 1 5.6731 2.0451 1.7791 36 1 8.1041 2.3797 1.5987 37 1 9.7221 4.3269 -0.8423 38 1 11.8924 3.4977 -0.5927 39 1 12.3475 1.6598 1.5030 40 1 12.2301 0.7521 -0.0236 41 1 15.4165 -0.3747 1.4389 42 1 7.5617 4.2754 -2.1951 43 1 5.1297 3.9498 -2.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785737708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:00 Heat of formation + Delta-G solvation = -97.168526 kcal Electronic energy + Delta-G solvation = -25889.797978 eV Core-core repulsion = 21934.668320 eV Total energy + Delta-G solvation = -3955.129659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04865 -41.48302 -39.93114 -37.99464 -36.96955 -36.16043 -35.30924 -34.30332 -32.54930 -32.02715 -30.39093 -28.90701 -27.67358 -25.35402 -24.46095 -23.99611 -23.37411 -22.06455 -21.55662 -19.91578 -19.29710 -18.88859 -18.53968 -18.03132 -17.87514 -16.95591 -16.80662 -16.62052 -16.16250 -15.83341 -15.31230 -15.22884 -14.93438 -14.73830 -14.48608 -14.22790 -14.09237 -14.01022 -13.82282 -13.63533 -13.52166 -13.23431 -12.94169 -12.87519 -12.76237 -12.53883 -12.51021 -12.21174 -11.81231 -11.57219 -11.49547 -11.45083 -11.09854 -10.82908 -10.28986 -9.96562 -9.89621 -8.95463 -8.29087 -6.45767 0.07975 0.37617 0.98461 1.43739 1.45536 1.56044 1.58388 1.70479 2.07692 2.38823 2.69676 2.87727 3.06344 3.38685 3.88512 3.96829 3.99913 4.07032 4.14769 4.32750 4.33839 4.40940 4.53693 4.66451 4.66772 4.76729 4.89919 4.92805 4.99960 5.06293 5.09897 5.24209 5.30007 5.30714 5.36189 5.42476 5.48981 5.55148 5.64284 5.82201 5.98735 6.10680 6.17462 6.65753 7.10827 7.16806 7.24991 7.58787 8.83432 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.002047 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.319114 B =13673.876253 C =14372.549305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 O -0.359 6.359 4 C 0.643 3.357 5 O -0.602 6.602 6 N -0.548 5.548 7 C 0.080 3.920 8 C 0.116 3.884 9 C -0.093 4.093 10 C -0.133 4.133 11 C 0.162 3.838 12 N -0.671 5.671 13 C 0.689 3.311 14 O -0.628 6.628 15 N -0.713 5.713 16 C 0.283 3.717 17 C -0.554 4.554 18 H 0.087 0.913 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.988 3.012 22 H -0.251 1.251 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.123 4.123 26 C -0.085 4.085 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.427 0.573 38 H 0.409 0.591 39 H -0.011 1.011 40 H -0.013 1.013 41 H 0.269 0.731 42 H 0.170 0.830 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.271 12.789 -6.781 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 O -0.273 6.273 4 C 0.398 3.602 5 O -0.492 6.492 6 N -0.284 5.284 7 C -0.059 4.059 8 C 0.025 3.975 9 C -0.114 4.114 10 C -0.155 4.155 11 C 0.066 3.934 12 N -0.321 5.321 13 C 0.390 3.610 14 O -0.509 6.509 15 N -0.366 5.366 16 C 0.160 3.840 17 C -0.591 4.591 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.811 3.189 22 H -0.174 1.174 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.144 4.144 26 C -0.104 4.104 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.266 0.734 38 H 0.245 0.755 39 H 0.007 0.993 40 H 0.004 0.996 41 H 0.077 0.923 42 H 0.187 0.813 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -28.365 11.427 -6.157 31.194 hybrid contribution 1.460 -0.177 0.154 1.478 sum -26.906 11.250 -6.003 29.775 Atomic orbital electron populations 1.21827 0.89453 1.04568 1.04023 1.23279 0.96993 0.77686 1.02406 1.86249 1.20068 1.34493 1.86494 1.18325 0.81774 0.83987 0.76078 1.91051 1.60889 1.40857 1.56388 1.44032 1.05027 1.04560 1.74740 1.22159 0.93515 0.86146 1.04120 1.17380 0.81061 1.03414 0.95629 1.21005 0.92658 0.99059 0.98659 1.21099 0.94638 1.01414 0.98319 1.17838 0.82113 0.99226 0.94202 1.42424 1.03372 1.23535 1.62732 1.16310 0.82104 0.82695 0.79928 1.90886 1.77174 1.34710 1.48114 1.45289 1.03365 1.28529 1.59460 1.18479 0.87416 0.85895 0.92180 1.21630 0.90332 1.09761 1.37422 0.89489 1.26088 1.05000 0.94387 0.94265 1.70154 1.34151 1.14370 1.38328 0.85067 0.76996 0.78839 0.78014 1.17433 1.20529 1.20602 1.21058 0.92287 1.03387 0.97711 1.21198 0.94827 0.98673 0.95746 0.88064 0.90930 0.90798 0.91694 0.91895 0.89868 0.89385 0.88991 0.86997 0.87003 0.73427 0.75538 0.99346 0.99553 0.92256 0.81256 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 10.29 71.98 0.74 -0.49 16 2 C 0.07 1.19 6.19 71.98 0.45 1.63 16 3 O -0.36 -7.38 9.10 -55.61 -0.51 -7.88 16 4 C 0.64 17.18 8.26 129.79 1.07 18.25 16 5 O -0.60 -21.67 15.62 19.78 0.31 -21.36 16 6 N -0.55 -11.81 2.94 -783.70 -2.30 -14.11 16 7 C 0.08 0.90 10.28 127.77 1.31 2.22 16 8 C 0.12 2.89 4.90 38.11 0.19 3.08 16 9 C -0.09 -2.91 9.20 22.37 0.21 -2.70 16 10 C -0.13 -4.64 8.69 22.38 0.19 -4.44 16 11 C 0.16 4.74 6.30 38.11 0.24 4.98 16 12 N -0.67 -19.80 5.35 -317.04 -1.70 -21.49 16 13 C 0.69 28.99 8.41 179.05 1.51 30.49 16 14 O -0.63 -33.01 13.80 -4.01 -0.06 -33.07 16 15 N -0.71 -30.33 5.55 -482.30 -2.68 -33.01 16 16 C 0.28 15.72 5.43 85.63 0.46 16.19 16 17 C -0.55 -30.01 9.28 25.60 0.24 -29.77 16 18 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 21 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 25 C -0.12 -2.53 9.96 22.37 0.22 -2.30 16 26 C -0.08 -1.64 9.81 22.38 0.22 -1.42 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.87 7.46 -2.39 -0.02 0.85 16 34 H 0.09 0.80 8.05 -2.39 -0.02 0.78 16 35 H 0.11 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.11 4.68 6.24 -2.91 -0.02 4.66 16 37 H 0.43 8.49 8.84 -92.71 -0.82 7.68 16 38 H 0.41 13.85 8.34 -92.70 -0.77 13.07 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -84.16 373.08 2.35 -81.81 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.55 Total: 24.88 kcal Atomic # 6 Polarization: 28.78 SS G_CDS: 7.51 Total: 36.29 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -6.39 Total: -124.99 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -0.25 Total: -62.32 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -84.16 2.35 -81.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785737708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.356 kcal (2) G-P(sol) polarization free energy of solvation -84.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds