Wall clock time and date at job start Tue Mar 31 2020 13:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34633 * 117.00031 * 2 1 4 4 O 1.21508 * 120.00229 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00182 * 180.02562 * 3 2 1 6 6 C 1.46507 * 119.99909 * 0.02562 * 5 3 2 7 7 C 1.46498 * 120.00061 * 179.97438 * 5 3 2 8 8 C 1.50699 * 109.47287 * 269.99648 * 7 5 3 9 9 C 1.38275 * 119.93251 * 269.72463 * 8 7 5 10 10 C 1.38114 * 120.06918 * 179.76573 * 9 8 7 11 11 C 1.38869 * 119.92861 * 0.51503 * 10 9 8 12 12 N 1.39950 * 120.07027 * 179.72575 * 11 10 9 13 13 C 1.34774 * 119.99676 * 213.28822 * 12 11 10 14 14 O 1.21584 * 120.00120 * 5.31438 * 13 12 11 15 15 N 1.34780 * 119.99706 * 185.31224 * 13 12 11 16 16 C 1.46499 * 119.99935 * 180.02562 * 15 13 12 17 17 C 1.50692 * 109.47468 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00534 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99464 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00284 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47034 * 90.00298 * 21 19 17 23 23 H 1.48493 * 109.47183 * 210.00202 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00462 * 21 19 17 25 25 C 1.38864 * 119.85821 * 359.73746 * 11 10 9 26 26 C 1.38115 * 119.93282 * 0.02562 * 25 11 10 27 27 H 1.08999 * 109.47320 * 60.00066 * 1 2 3 28 28 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47064 * 300.00191 * 1 2 3 30 30 H 1.09002 * 109.47176 * 89.99754 * 6 5 3 31 31 H 1.09002 * 109.46795 * 210.00095 * 6 5 3 32 32 H 1.08998 * 109.46781 * 329.99512 * 6 5 3 33 33 H 1.08997 * 109.47085 * 30.00227 * 7 5 3 34 34 H 1.09007 * 109.47089 * 149.99999 * 7 5 3 35 35 H 1.07995 * 119.96986 * 0.02562 * 9 8 7 36 36 H 1.08007 * 120.04000 * 180.25695 * 10 9 8 37 37 H 0.96998 * 119.99847 * 33.28287 * 12 11 10 38 38 H 0.96994 * 119.99855 * 0.02562 * 15 13 12 39 39 H 1.09008 * 109.47197 * 300.00399 * 16 15 13 40 40 H 1.09003 * 109.47085 * 59.99510 * 16 15 13 41 41 H 0.97006 * 119.99365 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.03124 * 179.97438 * 25 11 10 43 43 H 1.07993 * 119.96297 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2071 0.0414 -0.0017 7 6 4.0742 2.5755 -0.0011 8 6 4.3018 3.0227 -1.4221 9 6 5.4762 2.6883 -2.0709 10 6 5.6856 3.0926 -3.3749 11 6 4.7199 3.8448 -4.0307 12 7 4.9316 4.2609 -5.3500 13 6 4.4381 5.4421 -5.7714 14 8 3.8933 6.1896 -4.9823 15 7 4.5485 5.7947 -7.0676 16 6 4.0126 7.0789 -7.5255 17 6 4.2638 7.2297 -9.0037 18 1 4.7715 6.4470 -9.5478 19 6 3.8446 8.3664 -9.6619 20 7 3.2259 9.3193 -8.9995 21 14 4.1566 8.5536 -11.4941 22 1 3.0093 7.9922 -12.2515 23 1 4.3117 9.9928 -11.8253 24 1 5.3969 7.8245 -11.8620 25 6 3.5439 4.1834 -3.3745 26 6 3.3383 3.7719 -2.0722 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.4045 -0.2626 -1.0296 31 1 5.1516 0.2212 0.5119 32 1 3.6588 -0.7482 0.5120 33 1 3.4464 3.3033 0.5128 34 1 5.0324 2.4953 0.5124 35 1 6.2286 2.1068 -1.5591 36 1 6.6013 2.8276 -3.8826 37 1 5.4335 3.6992 -5.9611 38 1 4.9828 5.1981 -7.6971 39 1 2.9402 7.1144 -7.3333 40 1 4.5048 7.8901 -6.9891 41 1 2.9313 10.1192 -9.4625 42 1 2.7911 4.7686 -3.8817 43 1 2.4241 4.0353 -1.5612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785816913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:46 Heat of formation + Delta-G solvation = -75.184622 kcal Electronic energy + Delta-G solvation = -26024.434975 eV Core-core repulsion = 22070.258610 eV Total energy + Delta-G solvation = -3954.176365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80031 -40.15534 -38.62900 -37.07296 -35.84512 -34.56735 -34.10139 -32.40056 -30.86161 -30.68149 -28.09628 -27.66116 -26.83165 -25.37424 -23.10663 -22.65474 -21.65246 -20.60817 -20.16475 -18.39060 -18.12230 -17.53373 -17.30416 -16.94586 -16.03263 -15.68285 -15.35394 -15.08328 -14.89941 -14.57684 -14.20067 -14.17869 -14.02157 -13.55871 -13.29036 -13.11481 -13.10446 -12.84308 -12.68645 -12.31261 -12.05838 -12.00136 -11.93672 -11.72269 -11.06362 -10.99854 -10.98109 -10.92366 -10.75740 -10.33008 -10.03092 -9.51113 -9.41676 -9.09680 -8.78285 -8.76610 -8.09230 -7.70360 -6.18426 -4.25573 1.25204 1.54104 2.05496 2.60945 3.15300 3.23218 3.29862 3.32504 3.56567 3.74625 4.08212 4.30083 4.68133 4.75004 4.82234 4.88507 4.90861 4.97149 5.06895 5.08747 5.17776 5.18269 5.22486 5.38671 5.41571 5.55888 5.71676 5.80353 5.96629 6.08810 6.14855 6.35123 6.47902 6.68426 6.77334 7.03094 7.03754 7.23930 7.38439 7.48214 7.50523 7.80760 7.97040 8.04509 8.66671 8.81801 9.17587 9.41526 10.91728 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.002122 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.453137 B =13190.432124 C =13703.648544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.646 3.354 4 O -0.565 6.565 5 N -0.593 5.593 6 C 0.084 3.916 7 C 0.177 3.823 8 C -0.148 4.148 9 C -0.083 4.083 10 C -0.163 4.163 11 C 0.192 3.808 12 N -0.697 5.697 13 C 0.689 3.311 14 O -0.580 6.580 15 N -0.722 5.722 16 C 0.266 3.734 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.126 4.126 26 C -0.071 4.071 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.403 0.597 38 H 0.388 0.612 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.266 0.734 42 H 0.139 0.861 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -22.431 18.445 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.453 6.453 5 N -0.333 5.333 6 C -0.059 4.059 7 C 0.057 3.943 8 C -0.150 4.150 9 C -0.102 4.102 10 C -0.184 4.184 11 C 0.095 3.905 12 N -0.344 5.344 13 C 0.389 3.611 14 O -0.457 6.457 15 N -0.373 5.373 16 C 0.145 3.855 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.146 4.146 26 C -0.090 4.090 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.237 0.763 38 H 0.221 0.779 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.156 0.844 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.199 -21.167 19.034 28.552 hybrid contribution 0.527 -0.317 -1.787 1.890 sum 2.726 -21.485 17.247 27.685 Atomic orbital electron populations 1.23189 0.74468 1.03353 1.02864 1.86225 1.24129 1.31229 1.87079 1.18103 0.83262 0.82168 0.76410 1.91005 1.64182 1.34830 1.55324 1.46739 1.02164 1.08240 1.76191 1.21788 0.95883 0.85892 1.02342 1.20359 0.97614 0.82681 0.93685 1.19988 0.95891 1.02264 0.96885 1.20664 0.96558 0.99107 0.93852 1.20781 0.98359 1.03945 0.95307 1.17627 0.93261 0.95388 0.84246 1.42895 1.59110 1.21395 1.11030 1.16175 0.80098 0.80842 0.83939 1.90906 1.48948 1.52016 1.53853 1.45789 1.61687 1.24047 1.05823 1.19057 0.94546 0.77859 0.94058 1.21198 1.39782 1.04341 0.92919 0.91888 1.24951 0.94709 0.95378 0.98993 1.69981 1.37954 1.07856 1.36345 0.86389 0.78637 0.77462 0.84253 1.20446 1.20973 1.19775 1.21306 0.96721 1.01085 0.95530 1.21057 0.98520 0.95444 0.93989 0.91717 0.88086 0.91897 0.92382 0.90770 0.90561 0.88735 0.89041 0.86148 0.85907 0.76250 0.77922 0.95478 0.95493 0.92385 0.84362 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.76 9.39 -40.30 -0.38 -4.13 16 3 C 0.65 7.70 8.39 54.06 0.45 8.16 16 4 O -0.57 -8.41 15.23 -19.28 -0.29 -8.70 16 5 N -0.59 -5.60 2.86 -188.80 -0.54 -6.14 16 6 C 0.08 0.50 10.49 59.85 0.63 1.13 16 7 C 0.18 1.64 5.57 -5.20 -0.03 1.61 16 8 C -0.15 -1.73 5.46 -104.59 -0.57 -2.31 16 9 C -0.08 -0.87 9.69 -39.61 -0.38 -1.25 16 10 C -0.16 -1.95 9.96 -39.39 -0.39 -2.35 16 11 C 0.19 2.94 6.28 -83.69 -0.53 2.42 16 12 N -0.70 -10.89 5.35 -14.22 -0.08 -10.97 16 13 C 0.69 14.26 8.30 -86.92 -0.72 13.54 16 14 O -0.58 -14.37 14.03 5.29 0.07 -14.29 16 15 N -0.72 -15.26 5.55 -66.41 -0.37 -15.63 16 16 C 0.27 7.06 5.43 -5.20 -0.03 7.03 16 17 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 18 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -26.06 13.29 55.43 0.74 -25.33 16 21 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.13 -2.12 8.66 -39.39 -0.34 -2.46 16 26 C -0.07 -1.04 9.69 -39.61 -0.38 -1.42 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 32 H 0.08 0.42 7.37 -51.93 -0.38 0.04 16 33 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 34 H 0.09 0.56 7.84 -51.93 -0.41 0.16 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.40 4.77 8.83 -40.82 -0.36 4.41 16 38 H 0.39 6.90 8.34 -40.82 -0.34 6.56 16 39 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.14 2.71 6.41 -52.48 -0.34 2.37 16 43 H 0.13 1.93 7.57 -52.49 -0.40 1.53 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -35.68 372.25 -7.83 -43.52 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.93 Total: 8.07 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -1.64 Total: 12.22 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.25 Total: -58.07 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.60 Total: -27.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.68 -7.83 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.668 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds