Wall clock time and date at job start Tue Mar 31 2020 13:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34633 * 117.00031 * 2 1 4 4 O 1.21508 * 120.00229 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00182 * 180.02562 * 3 2 1 6 6 C 1.46507 * 119.99909 * 0.02562 * 5 3 2 7 7 C 1.46498 * 120.00061 * 179.97438 * 5 3 2 8 8 C 1.50699 * 109.47287 * 269.99648 * 7 5 3 9 9 C 1.38275 * 119.93251 * 269.72463 * 8 7 5 10 10 C 1.38114 * 120.06918 * 179.76573 * 9 8 7 11 11 C 1.38869 * 119.92861 * 0.51503 * 10 9 8 12 12 N 1.39950 * 120.07027 * 179.72575 * 11 10 9 13 13 C 1.34774 * 119.99676 * 213.28822 * 12 11 10 14 14 O 1.21584 * 120.00120 * 5.31438 * 13 12 11 15 15 N 1.34780 * 119.99706 * 185.31224 * 13 12 11 16 16 C 1.46499 * 119.99935 * 180.02562 * 15 13 12 17 17 C 1.50692 * 109.47468 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00534 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99464 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00284 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47034 * 90.00298 * 21 19 17 23 23 H 1.48493 * 109.47183 * 210.00202 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00462 * 21 19 17 25 25 C 1.38864 * 119.85821 * 359.73746 * 11 10 9 26 26 C 1.38115 * 119.93282 * 0.02562 * 25 11 10 27 27 H 1.08999 * 109.47320 * 60.00066 * 1 2 3 28 28 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47064 * 300.00191 * 1 2 3 30 30 H 1.09002 * 109.47176 * 89.99754 * 6 5 3 31 31 H 1.09002 * 109.46795 * 210.00095 * 6 5 3 32 32 H 1.08998 * 109.46781 * 329.99512 * 6 5 3 33 33 H 1.08997 * 109.47085 * 30.00227 * 7 5 3 34 34 H 1.09007 * 109.47089 * 149.99999 * 7 5 3 35 35 H 1.07995 * 119.96986 * 0.02562 * 9 8 7 36 36 H 1.08007 * 120.04000 * 180.25695 * 10 9 8 37 37 H 0.96998 * 119.99847 * 33.28287 * 12 11 10 38 38 H 0.96994 * 119.99855 * 0.02562 * 15 13 12 39 39 H 1.09008 * 109.47197 * 300.00399 * 16 15 13 40 40 H 1.09003 * 109.47085 * 59.99510 * 16 15 13 41 41 H 0.97006 * 119.99365 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.03124 * 179.97438 * 25 11 10 43 43 H 1.07993 * 119.96297 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2071 0.0414 -0.0017 7 6 4.0742 2.5755 -0.0011 8 6 4.3018 3.0227 -1.4221 9 6 5.4762 2.6883 -2.0709 10 6 5.6856 3.0926 -3.3749 11 6 4.7199 3.8448 -4.0307 12 7 4.9316 4.2609 -5.3500 13 6 4.4381 5.4421 -5.7714 14 8 3.8933 6.1896 -4.9823 15 7 4.5485 5.7947 -7.0676 16 6 4.0126 7.0789 -7.5255 17 6 4.2638 7.2297 -9.0037 18 1 4.7715 6.4470 -9.5478 19 6 3.8446 8.3664 -9.6619 20 7 3.2259 9.3193 -8.9995 21 14 4.1566 8.5536 -11.4941 22 1 3.0093 7.9922 -12.2515 23 1 4.3117 9.9928 -11.8253 24 1 5.3969 7.8245 -11.8620 25 6 3.5439 4.1834 -3.3745 26 6 3.3383 3.7719 -2.0722 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.4045 -0.2626 -1.0296 31 1 5.1516 0.2212 0.5119 32 1 3.6588 -0.7482 0.5120 33 1 3.4464 3.3033 0.5128 34 1 5.0324 2.4953 0.5124 35 1 6.2286 2.1068 -1.5591 36 1 6.6013 2.8276 -3.8826 37 1 5.4335 3.6992 -5.9611 38 1 4.9828 5.1981 -7.6971 39 1 2.9402 7.1144 -7.3333 40 1 4.5048 7.8901 -6.9891 41 1 2.9313 10.1192 -9.4625 42 1 2.7911 4.7686 -3.8817 43 1 2.4241 4.0353 -1.5612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785816913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:46 Heat of formation + Delta-G solvation = -101.605373 kcal Electronic energy + Delta-G solvation = -26025.580664 eV Core-core repulsion = 22070.258610 eV Total energy + Delta-G solvation = -3955.322055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75639 -41.46475 -39.86343 -37.94433 -36.81287 -36.23772 -35.66076 -34.39208 -31.90022 -31.79196 -29.39598 -28.67746 -27.87173 -26.29828 -24.84793 -23.90870 -22.86385 -21.86906 -21.35943 -19.92299 -19.07147 -18.77360 -18.16519 -18.01183 -17.79140 -16.88600 -16.73590 -16.49931 -16.02315 -15.86152 -15.64892 -15.18020 -14.95032 -14.83441 -14.43827 -14.34257 -14.17343 -14.07140 -13.80258 -13.64014 -13.29212 -12.96179 -12.92531 -12.87309 -12.73340 -12.61496 -12.24352 -12.09603 -11.79191 -11.72749 -11.50574 -11.41954 -11.12247 -10.83034 -9.96473 -9.86705 -9.83549 -8.98919 -8.30677 -6.47657 0.20211 0.48671 1.26688 1.42315 1.45535 1.56213 1.70559 1.72622 2.07802 2.37598 2.82833 3.04492 3.12174 3.37030 3.87707 3.90349 4.08867 4.21888 4.33727 4.34255 4.38608 4.48851 4.58027 4.65589 4.71348 4.72065 4.79945 4.99695 5.03586 5.11305 5.21336 5.22570 5.29274 5.35827 5.42350 5.42622 5.57797 5.62056 5.68060 5.80107 6.09722 6.16747 6.25303 6.63299 7.13933 7.20861 7.23021 7.56075 8.81696 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.002122 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.453137 B =13190.432124 C =13703.648544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.371 6.371 3 C 0.635 3.365 4 O -0.607 6.607 5 N -0.588 5.588 6 C 0.078 3.922 7 C 0.176 3.824 8 C -0.137 4.137 9 C -0.066 4.066 10 C -0.146 4.146 11 C 0.161 3.839 12 N -0.673 5.673 13 C 0.689 3.311 14 O -0.628 6.628 15 N -0.715 5.715 16 C 0.285 3.715 17 C -0.555 4.555 18 H 0.086 0.914 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.988 3.012 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.254 1.254 25 C -0.156 4.156 26 C -0.088 4.088 27 H 0.050 0.950 28 H 0.137 0.863 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.174 0.826 36 H 0.160 0.840 37 H 0.424 0.576 38 H 0.408 0.592 39 H -0.014 1.014 40 H -0.012 1.012 41 H 0.269 0.731 42 H 0.093 0.907 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -25.938 18.428 32.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.285 6.285 3 C 0.390 3.610 4 O -0.499 6.499 5 N -0.327 5.327 6 C -0.063 4.063 7 C 0.056 3.944 8 C -0.139 4.139 9 C -0.085 4.085 10 C -0.166 4.166 11 C 0.066 3.934 12 N -0.323 5.323 13 C 0.389 3.611 14 O -0.509 6.509 15 N -0.368 5.368 16 C 0.162 3.838 17 C -0.593 4.593 18 H 0.104 0.896 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.811 3.189 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.177 1.177 25 C -0.177 4.177 26 C -0.108 4.108 27 H 0.069 0.931 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.192 0.808 36 H 0.178 0.822 37 H 0.263 0.737 38 H 0.244 0.756 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.697 -24.798 19.027 31.772 hybrid contribution -0.582 0.666 -1.602 1.829 sum 5.116 -24.132 17.426 30.202 Atomic orbital electron populations 1.23435 0.73328 1.05481 1.02148 1.86230 1.25295 1.30182 1.86774 1.18506 0.84221 0.82080 0.76234 1.90985 1.65392 1.36251 1.57262 1.46883 1.01455 1.09489 1.74914 1.22072 0.96794 0.84332 1.03141 1.20495 0.99384 0.82473 0.92064 1.20312 0.95323 1.00315 0.97953 1.21217 0.96477 0.97701 0.93063 1.21196 0.98176 1.01517 0.95756 1.17873 0.93989 0.97437 0.84131 1.42471 1.58270 1.19661 1.11883 1.16311 0.79671 0.81889 0.83202 1.90883 1.50885 1.54064 1.55027 1.45321 1.62003 1.22820 1.06658 1.18468 0.91828 0.79207 0.94341 1.21586 1.39780 1.05115 0.92834 0.89579 1.26101 0.94052 0.94820 1.04750 1.70152 1.39228 1.08677 1.38883 0.85107 0.79283 0.77455 0.77054 1.19655 1.20960 1.17738 1.21079 0.97270 1.02588 0.96788 1.20982 0.99203 0.97149 0.93418 0.93090 0.84469 0.92063 0.92049 0.87305 0.90252 0.90636 0.84264 0.80825 0.82242 0.73725 0.75624 0.99629 0.99391 0.92205 0.88910 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.56 113.37 1.20 1.93 16 2 O -0.37 -7.20 9.39 -55.42 -0.52 -7.72 16 3 C 0.64 14.97 8.39 129.79 1.09 16.06 16 4 O -0.61 -19.04 15.23 19.81 0.30 -18.74 16 5 N -0.59 -9.72 2.86 -981.64 -2.80 -12.52 16 6 C 0.08 0.60 10.49 127.77 1.34 1.94 16 7 C 0.18 2.81 5.57 85.63 0.48 3.29 16 8 C -0.14 -2.94 5.46 -19.85 -0.11 -3.05 16 9 C -0.07 -1.07 9.69 22.25 0.22 -0.85 16 10 C -0.15 -2.96 9.96 22.39 0.22 -2.73 16 11 C 0.16 4.91 6.28 38.15 0.24 5.15 16 12 N -0.67 -20.96 5.35 -317.18 -1.70 -22.66 16 13 C 0.69 29.83 8.30 179.05 1.49 31.31 16 14 O -0.63 -33.64 14.03 -3.98 -0.06 -33.70 16 15 N -0.71 -31.19 5.55 -482.30 -2.68 -33.87 16 16 C 0.28 15.99 5.43 85.63 0.46 16.45 16 17 C -0.56 -30.40 9.28 25.60 0.24 -30.17 16 18 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 19 C 0.00 0.14 5.46 84.66 0.46 0.60 16 20 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 21 Si 0.99 42.47 29.54 68.60 2.03 44.50 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 25 C -0.16 -5.69 8.66 22.39 0.19 -5.50 16 26 C -0.09 -2.74 9.69 22.25 0.22 -2.53 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.13 7.89 -2.39 -0.02 0.11 16 32 H 0.08 0.60 7.37 -2.39 -0.02 0.58 16 33 H 0.08 1.54 7.36 -2.39 -0.02 1.52 16 34 H 0.14 0.94 7.84 -2.38 -0.02 0.92 16 35 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.42 9.25 8.83 -92.71 -0.82 8.43 16 38 H 0.41 14.32 8.34 -92.71 -0.77 13.55 16 39 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 40 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 42 H 0.09 4.15 6.41 -2.91 -0.02 4.13 16 43 H 0.11 3.67 7.57 -2.91 -0.02 3.65 16 Total: -1.00 -86.49 372.25 2.05 -84.44 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.54 Total: 24.90 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 7.73 Total: 31.91 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.89 Total: -125.60 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -0.27 Total: -60.15 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -86.49 2.05 -84.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.167 kcal (2) G-P(sol) polarization free energy of solvation -86.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds