Wall clock time and date at job start Tue Mar 31 2020 12:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47254 * 2 1 4 4 C 1.46507 * 119.99903 * 269.99817 * 3 2 1 5 5 C 1.50696 * 109.46890 * 270.00029 * 4 3 2 6 6 H 1.07999 * 120.00512 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99662 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99577 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99882 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46935 * 90.00322 * 9 7 5 11 11 H 1.48510 * 109.46810 * 209.99873 * 9 7 5 12 12 H 1.48491 * 109.47212 * 329.99946 * 9 7 5 13 13 C 1.34776 * 120.00304 * 89.99734 * 3 2 1 14 14 O 1.21279 * 120.00065 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00081 * 0.02562 * 13 3 2 16 16 O 1.45197 * 109.47463 * 180.02562 * 15 13 3 17 17 C 1.34670 * 117.00364 * 180.02562 * 16 15 13 18 18 O 1.21430 * 119.99650 * 359.97438 * 17 16 15 19 19 C 1.48031 * 120.00190 * 179.97438 * 17 16 15 20 20 C 1.40161 * 121.15055 * 354.02933 * 19 17 16 21 21 C 1.38495 * 117.81826 * 180.02562 * 20 19 17 22 22 C 1.50699 * 120.01540 * 179.97438 * 21 20 19 23 23 N 1.31922 * 119.97389 * 359.97438 * 21 20 19 24 24 N 1.28275 * 122.52747 * 359.73673 * 23 21 20 25 25 C 1.31928 * 122.33069 * 0.54406 * 24 23 21 26 26 C 1.50694 * 120.17406 * 179.74722 * 25 24 23 27 27 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46991 * 300.00542 * 1 2 3 29 29 H 1.08998 * 109.46981 * 59.99910 * 1 2 3 30 30 H 1.08993 * 109.47422 * 239.99745 * 2 1 3 31 31 H 1.09001 * 109.47162 * 119.99345 * 2 1 3 32 32 H 1.09005 * 109.46695 * 29.99910 * 4 3 2 33 33 H 1.08997 * 109.47262 * 149.99811 * 4 3 2 34 34 H 0.96996 * 119.99389 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47091 * 59.99481 * 15 13 3 36 36 H 1.09004 * 109.46628 * 299.99848 * 15 13 3 37 37 H 1.07995 * 121.08754 * 0.03544 * 20 19 17 38 38 H 1.09000 * 109.47449 * 89.99629 * 22 21 20 39 39 H 1.09000 * 109.47261 * 210.00158 * 22 21 20 40 40 H 1.08998 * 109.46796 * 329.99782 * 22 21 20 41 41 H 1.08998 * 109.46974 * 263.14089 * 26 25 24 42 42 H 1.08997 * 109.47672 * 23.14256 * 26 25 24 43 43 H 1.09003 * 109.47144 * 143.14237 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3895 -2.8780 8 7 5.3912 2.1824 -3.2579 9 14 3.0125 3.4338 -3.9300 10 1 3.1149 4.8543 -3.5094 11 1 3.4061 3.3104 -5.3567 12 1 1.6131 2.9669 -3.7604 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4723 16 8 2.3061 2.1960 3.5759 17 6 2.1354 1.7105 4.8204 18 8 1.7349 0.5752 4.9795 19 6 2.4359 2.5607 5.9943 20 6 3.0152 3.8279 5.8425 21 6 3.2673 4.5648 6.9877 22 6 3.8895 5.9332 6.8819 23 7 2.9626 4.0682 8.1713 24 7 2.4273 2.9116 8.3170 25 6 2.1513 2.1277 7.2924 26 6 1.5273 0.7751 7.5201 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 5.7170 2.5722 -4.0841 35 1 2.6228 0.4189 2.5299 36 1 0.9444 1.0116 2.5302 37 1 3.2568 4.2170 4.8644 38 1 3.1041 6.6836 6.7918 39 1 4.4822 6.1329 7.7747 40 1 4.5325 5.9729 6.0027 41 1 2.3054 0.0118 7.5227 42 1 1.0103 0.7702 8.4797 43 1 0.8147 0.5648 6.7225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786024356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:43 Heat of formation + Delta-G solvation = -56.070231 kcal Electronic energy + Delta-G solvation = -26695.201912 eV Core-core repulsion = 22741.854410 eV Total energy + Delta-G solvation = -3953.347503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76098 -40.50864 -39.17676 -36.84568 -35.54884 -34.77111 -34.01703 -32.83748 -30.62685 -30.40302 -29.37231 -27.26575 -27.13517 -25.51870 -23.37660 -23.14532 -22.39901 -21.38389 -18.91295 -18.42866 -17.83586 -17.16083 -16.88536 -16.78444 -16.29750 -16.00458 -15.74116 -15.49565 -14.78934 -14.47248 -14.07101 -13.84678 -13.66736 -13.62377 -13.55551 -13.04626 -12.95032 -12.83144 -12.69604 -12.49868 -12.46114 -12.30562 -11.94454 -11.56198 -11.39008 -11.13895 -11.03183 -10.97768 -10.75206 -10.64053 -10.59501 -10.24900 -10.01276 -9.83198 -9.64234 -9.25362 -8.66913 -7.93528 -6.16630 -4.16521 -0.16290 0.46769 2.00658 2.06374 3.02094 3.12800 3.22999 3.28778 3.30789 3.52639 3.54943 3.86128 3.99140 4.27776 4.32083 4.49125 4.62318 4.70395 4.87414 4.95043 5.00602 5.16314 5.18779 5.19189 5.22693 5.34831 5.39915 5.40335 5.42850 5.56243 5.71027 5.73756 5.83609 5.86939 6.01894 6.11094 6.26602 6.56111 6.80483 7.12493 7.30328 7.50398 7.98915 8.27901 8.35924 8.68417 8.86247 9.42562 10.96578 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.002969 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.515786 B = 9429.301046 C =10644.988007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.321 6.321 17 C 0.514 3.486 18 O -0.488 6.488 19 C -0.121 4.121 20 C -0.048 4.048 21 C 0.055 3.945 22 C -0.101 4.101 23 N -0.217 5.217 24 N -0.243 5.243 25 C 0.121 3.879 26 C -0.108 4.108 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 -1.170 17.434 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.098 3.902 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.236 6.236 17 C 0.357 3.643 18 O -0.376 6.376 19 C -0.133 4.133 20 C -0.077 4.077 21 C -0.090 4.090 22 C -0.160 4.160 23 N -0.060 5.060 24 N -0.085 5.085 25 C -0.022 4.022 26 C -0.165 4.165 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.190 0.810 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.911 -0.651 18.902 20.907 hybrid contribution -0.395 0.087 -2.348 2.382 sum -9.305 -0.564 16.554 18.998 Atomic orbital electron populations 1.22248 0.96397 1.01976 1.02344 1.21564 0.93707 0.83476 1.03602 1.47879 1.64019 1.13581 1.06429 1.19717 0.97594 0.93421 0.79420 1.21301 0.95227 1.33305 1.07329 0.90680 1.24854 0.95013 0.95737 0.97308 1.69892 1.15129 1.44759 1.23533 0.86853 0.81395 0.81605 0.79850 1.19833 1.20986 1.19044 1.19651 0.79552 0.87123 0.84241 1.90717 1.44363 1.17564 1.86718 1.23041 1.03143 0.92590 0.83777 1.86565 1.78376 1.44822 1.13811 1.20713 0.74982 0.85377 0.83239 1.90813 1.41739 1.18668 1.86382 1.20161 1.04500 0.95981 0.92699 1.22912 0.90981 0.91787 1.02044 1.22972 0.97220 0.99063 0.89698 1.20735 1.01086 0.89682 1.04474 1.72786 1.05194 1.05216 1.22839 1.73146 1.09048 0.99039 1.27249 1.23136 0.92626 0.98337 0.88144 1.21006 1.01746 0.89413 1.04374 0.91588 0.93053 0.91920 0.89060 0.91345 0.94814 0.94387 0.92447 0.88007 0.88237 0.81032 0.89438 0.89634 0.89546 0.89097 0.90124 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.10 1.41 5.93 -4.04 -0.02 1.39 16 3 N -0.59 -11.19 2.46 -175.06 -0.43 -11.62 16 4 C 0.22 5.05 4.23 -5.19 -0.02 5.03 16 5 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.08 5.47 -17.81 -0.10 1.99 16 8 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 9 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 13 C 0.51 9.78 7.75 -10.99 -0.09 9.69 16 14 O -0.52 -12.16 16.08 -14.10 -0.23 -12.39 16 15 C 0.05 0.74 4.50 36.00 0.16 0.90 16 16 O -0.32 -4.73 9.18 -47.09 -0.43 -5.16 16 17 C 0.51 6.66 7.86 34.75 0.27 6.93 16 18 O -0.49 -6.43 13.32 -19.21 -0.26 -6.69 16 19 C -0.12 -1.44 5.92 -104.59 -0.62 -2.06 16 20 C -0.05 -0.51 9.46 -38.77 -0.37 -0.88 16 21 C 0.05 0.56 6.86 -82.46 -0.57 0.00 16 22 C -0.10 -0.70 10.19 36.01 0.37 -0.34 16 23 N -0.22 -2.69 11.41 33.57 0.38 -2.31 16 24 N -0.24 -3.10 11.42 33.82 0.39 -2.72 16 25 C 0.12 1.41 6.91 -81.98 -0.57 0.85 16 26 C -0.11 -1.01 8.96 36.00 0.32 -0.69 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.10 1.31 7.40 -51.93 -0.38 0.92 16 36 H 0.10 1.17 7.18 -51.93 -0.37 0.80 16 37 H 0.17 1.68 7.78 -52.49 -0.41 1.27 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.99 5.96 -51.93 -0.31 0.68 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -34.49 367.61 -5.99 -40.48 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.88 Total: -1.33 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.18 Total: 6.17 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 1.11 Total: -42.78 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.91 Total: -24.24 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.49 -5.99 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786024356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.593 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds