Wall clock time and date at job start Tue Mar 31 2020 12:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47254 * 2 1 4 4 C 1.46507 * 119.99903 * 269.99817 * 3 2 1 5 5 C 1.50696 * 109.46890 * 270.00029 * 4 3 2 6 6 H 1.07999 * 120.00512 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99662 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99577 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99882 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46935 * 90.00322 * 9 7 5 11 11 H 1.48510 * 109.46810 * 209.99873 * 9 7 5 12 12 H 1.48491 * 109.47212 * 329.99946 * 9 7 5 13 13 C 1.34776 * 120.00304 * 89.99734 * 3 2 1 14 14 O 1.21279 * 120.00065 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00081 * 0.02562 * 13 3 2 16 16 O 1.45197 * 109.47463 * 180.02562 * 15 13 3 17 17 C 1.34670 * 117.00364 * 180.02562 * 16 15 13 18 18 O 1.21430 * 119.99650 * 359.97438 * 17 16 15 19 19 C 1.48031 * 120.00190 * 179.97438 * 17 16 15 20 20 C 1.40161 * 121.15055 * 354.02933 * 19 17 16 21 21 C 1.38495 * 117.81826 * 180.02562 * 20 19 17 22 22 C 1.50699 * 120.01540 * 179.97438 * 21 20 19 23 23 N 1.31922 * 119.97389 * 359.97438 * 21 20 19 24 24 N 1.28275 * 122.52747 * 359.73673 * 23 21 20 25 25 C 1.31928 * 122.33069 * 0.54406 * 24 23 21 26 26 C 1.50694 * 120.17406 * 179.74722 * 25 24 23 27 27 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46991 * 300.00542 * 1 2 3 29 29 H 1.08998 * 109.46981 * 59.99910 * 1 2 3 30 30 H 1.08993 * 109.47422 * 239.99745 * 2 1 3 31 31 H 1.09001 * 109.47162 * 119.99345 * 2 1 3 32 32 H 1.09005 * 109.46695 * 29.99910 * 4 3 2 33 33 H 1.08997 * 109.47262 * 149.99811 * 4 3 2 34 34 H 0.96996 * 119.99389 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47091 * 59.99481 * 15 13 3 36 36 H 1.09004 * 109.46628 * 299.99848 * 15 13 3 37 37 H 1.07995 * 121.08754 * 0.03544 * 20 19 17 38 38 H 1.09000 * 109.47449 * 89.99629 * 22 21 20 39 39 H 1.09000 * 109.47261 * 210.00158 * 22 21 20 40 40 H 1.08998 * 109.46796 * 329.99782 * 22 21 20 41 41 H 1.08998 * 109.46974 * 263.14089 * 26 25 24 42 42 H 1.08997 * 109.47672 * 23.14256 * 26 25 24 43 43 H 1.09003 * 109.47144 * 143.14237 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3895 -2.8780 8 7 5.3912 2.1824 -3.2579 9 14 3.0125 3.4338 -3.9300 10 1 3.1149 4.8543 -3.5094 11 1 3.4061 3.3104 -5.3567 12 1 1.6131 2.9669 -3.7604 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4723 16 8 2.3061 2.1960 3.5759 17 6 2.1354 1.7105 4.8204 18 8 1.7349 0.5752 4.9795 19 6 2.4359 2.5607 5.9943 20 6 3.0152 3.8279 5.8425 21 6 3.2673 4.5648 6.9877 22 6 3.8895 5.9332 6.8819 23 7 2.9626 4.0682 8.1713 24 7 2.4273 2.9116 8.3170 25 6 2.1513 2.1277 7.2924 26 6 1.5273 0.7751 7.5201 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 5.7170 2.5722 -4.0841 35 1 2.6228 0.4189 2.5299 36 1 0.9444 1.0116 2.5302 37 1 3.2568 4.2170 4.8644 38 1 3.1041 6.6836 6.7918 39 1 4.4822 6.1329 7.7747 40 1 4.5325 5.9729 6.0027 41 1 2.3054 0.0118 7.5227 42 1 1.0103 0.7702 8.4797 43 1 0.8147 0.5648 6.7225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786024356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:39 Heat of formation + Delta-G solvation = -78.201817 kcal Electronic energy + Delta-G solvation = -26696.161610 eV Core-core repulsion = 22741.854410 eV Total energy + Delta-G solvation = -3954.307200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -42.67015 -41.59284 -40.58689 -37.93957 -37.04712 -35.57911 -34.94388 -34.84371 -32.08265 -31.26870 -30.58565 -28.82172 -27.94104 -26.45915 -24.59636 -24.31457 -23.83240 -22.39844 -20.31515 -19.40855 -19.14610 -18.86585 -18.10113 -17.87984 -17.61509 -17.00717 -16.85019 -16.67888 -16.26976 -15.83652 -15.30168 -14.90269 -14.77622 -14.61591 -14.40982 -14.39952 -14.12070 -13.94868 -13.78110 -13.61269 -13.41020 -13.34970 -13.18725 -13.11800 -12.56999 -12.43151 -12.25057 -12.18146 -12.02766 -11.91359 -11.82553 -11.74552 -11.54161 -10.93614 -10.83177 -10.77811 -10.64138 -9.53664 -8.34147 -6.39809 -1.07118 -0.36507 0.92277 1.08607 1.34257 1.37826 1.45924 1.55872 2.21769 2.25349 2.31129 2.73954 2.98808 3.00617 3.13475 3.33317 3.38734 3.61116 3.86412 3.93623 3.96677 4.12891 4.15143 4.36853 4.40090 4.59003 4.63315 4.69575 4.71820 4.74348 4.77366 4.83249 4.90081 4.96971 5.00075 5.03288 5.20157 5.28136 5.37206 5.44705 5.55221 6.19717 6.27379 6.53455 6.62251 7.14167 7.27904 7.40734 8.82650 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.002969 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.515786 B = 9429.301046 C =10644.988007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.538 4.538 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.572 6.572 15 C 0.062 3.938 16 O -0.338 6.338 17 C 0.520 3.480 18 O -0.489 6.489 19 C -0.133 4.133 20 C -0.046 4.046 21 C 0.058 3.942 22 C -0.101 4.101 23 N -0.238 5.238 24 N -0.262 5.262 25 C 0.118 3.882 26 C -0.104 4.104 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.179 0.821 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -1.530 17.818 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.159 1.159 13 C 0.289 3.711 14 O -0.452 6.452 15 C -0.015 4.015 16 O -0.253 6.253 17 C 0.363 3.637 18 O -0.377 6.377 19 C -0.145 4.145 20 C -0.075 4.075 21 C -0.087 4.087 22 C -0.159 4.159 23 N -0.081 5.081 24 N -0.104 5.104 25 C -0.026 4.026 26 C -0.162 4.162 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.151 0.849 37 H 0.197 0.803 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.145 -1.072 19.321 22.331 hybrid contribution 0.376 0.157 -2.407 2.442 sum -10.768 -0.915 16.914 20.072 Atomic orbital electron populations 1.22186 0.93670 1.03940 1.02317 1.21910 0.95880 0.80708 1.04530 1.47962 1.63799 1.15350 1.05265 1.19373 0.95006 0.93213 0.81926 1.21554 0.97047 1.32288 1.06800 0.95123 1.25841 0.96669 0.97153 0.98949 1.70049 1.17469 1.46496 1.24460 0.85740 0.80569 0.79077 0.77737 1.20107 1.20244 1.15859 1.20472 0.78188 0.86707 0.85778 1.90682 1.46753 1.20045 1.87691 1.22959 1.05447 0.91813 0.81243 1.86552 1.78857 1.45410 1.14443 1.20753 0.74721 0.85440 0.82765 1.90808 1.41915 1.18707 1.86281 1.20203 1.05359 0.96450 0.92455 1.23087 0.90361 0.91501 1.02584 1.23423 0.96349 1.00080 0.88850 1.20877 1.01611 0.88006 1.05404 1.72734 1.05946 1.05440 1.23940 1.73096 1.09862 0.99522 1.27909 1.23405 0.92465 0.98960 0.87788 1.21039 1.01774 0.88355 1.04983 0.88578 0.92050 0.93003 0.90127 0.88576 0.92728 0.95966 0.92256 0.86182 0.84942 0.80315 0.88004 0.88990 0.88247 0.88486 0.88847 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.24 71.98 0.74 -2.40 16 2 C 0.09 2.38 5.93 86.38 0.51 2.89 16 3 N -0.59 -22.10 2.46 -826.16 -2.03 -24.13 16 4 C 0.23 10.41 4.23 85.63 0.36 10.77 16 5 C -0.54 -30.51 9.94 25.60 0.25 -30.25 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.69 5.47 84.66 0.46 1.16 16 8 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 9 Si 0.95 42.84 27.47 68.60 1.88 44.73 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 13 C 0.50 18.96 7.75 87.66 0.68 19.64 16 14 O -0.57 -27.31 16.08 15.77 0.25 -27.05 16 15 C 0.06 1.64 4.50 71.24 0.32 1.96 16 16 O -0.34 -9.50 9.18 -49.41 -0.45 -9.96 16 17 C 0.52 12.69 7.86 70.42 0.55 13.24 16 18 O -0.49 -11.83 13.32 20.06 0.27 -11.57 16 19 C -0.13 -3.03 5.92 -19.84 -0.12 -3.15 16 20 C -0.05 -0.95 9.46 22.80 0.22 -0.73 16 21 C 0.06 1.14 6.86 42.61 0.29 1.43 16 22 C -0.10 -1.24 10.19 71.24 0.73 -0.52 16 23 N -0.24 -5.76 11.41 -47.70 -0.54 -6.30 16 24 N -0.26 -6.56 11.42 -46.93 -0.54 -7.10 16 25 C 0.12 2.65 6.91 42.91 0.30 2.94 16 26 C -0.10 -1.80 8.96 71.23 0.64 -1.16 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.07 7.22 -2.39 -0.02 1.05 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 31 H 0.10 1.95 6.44 -2.39 -0.02 1.94 16 32 H 0.05 2.28 7.13 -2.38 -0.02 2.27 16 33 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.12 2.76 7.40 -2.39 -0.02 2.75 16 36 H 0.13 2.65 7.18 -2.38 -0.02 2.63 16 37 H 0.18 3.38 7.78 -2.91 -0.02 3.36 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.78 5.96 -2.39 -0.01 1.77 16 Total: -1.00 -77.92 367.61 6.05 -71.87 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.98 Total: 11.85 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 5.93 Total: 15.82 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -2.81 Total: -95.69 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: 0.07 Total: -48.58 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.73 kcal Total: -77.92 6.05 -71.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786024356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.334 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds