Wall clock time and date at job start Tue Mar 31 2020 13:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 N 1.40094 * 120.00547 * 180.02562 * 11 9 8 13 13 C 1.34774 * 120.00547 * 179.97438 * 12 11 9 14 14 O 1.21587 * 119.99926 * 180.02562 * 13 12 11 15 15 N 1.34776 * 119.99937 * 359.97438 * 13 12 11 16 16 C 1.46504 * 120.00132 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46784 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00546 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99477 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00232 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47281 * 59.99601 * 21 19 17 23 23 H 1.48492 * 109.47395 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46884 * 299.99691 * 21 19 17 25 25 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 26 26 C 1.38149 * 120.05738 * 0.02562 * 25 6 5 27 27 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 29 29 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 30 30 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 33 33 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 34 34 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 35 35 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 36 36 H 0.97006 * 119.99992 * 0.02562 * 11 9 8 37 37 H 0.97006 * 119.99461 * 359.97438 * 12 11 9 38 38 H 0.97000 * 119.99793 * 0.02562 * 15 13 12 39 39 H 1.08999 * 109.46947 * 300.00683 * 16 15 13 40 40 H 1.08997 * 109.46788 * 60.00692 * 16 15 13 41 41 H 0.97001 * 120.00072 * 180.02562 * 20 19 17 42 42 H 1.08005 * 119.97210 * 179.97438 * 25 6 5 43 43 H 1.07998 * 120.03203 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 7 5.8538 8.6735 -2.5807 13 6 6.1640 9.2782 -3.7446 14 8 6.7172 10.3609 -3.7386 15 7 5.8618 8.6823 -4.9151 16 6 6.1994 9.3394 -6.1802 17 6 5.7577 8.4716 -7.3304 18 1 5.2736 7.5256 -7.1383 19 6 5.9718 8.8855 -8.6280 20 7 6.5609 10.0378 -8.8620 21 14 5.4236 7.8102 -10.0538 22 1 3.9551 7.6025 -9.9811 23 1 5.7659 8.4761 -11.3362 24 1 6.1137 6.4975 -9.9776 25 6 1.9209 3.6048 0.0021 26 6 1.2913 2.3751 0.0016 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0208 0.3800 -0.0014 31 1 5.1344 2.5751 0.0000 32 1 3.3560 5.7444 0.5232 33 1 4.9419 4.9365 0.5259 34 1 4.8524 4.7525 -1.9454 35 1 3.2663 5.5605 -1.9480 36 1 4.9987 6.9972 -3.4300 37 1 6.0717 9.1022 -1.7383 38 1 5.4208 7.8184 -4.9198 39 1 5.6920 10.3024 -6.2362 40 1 7.2772 9.4929 -6.2335 41 1 6.7112 10.3291 -9.7750 42 1 1.3340 4.5115 0.0038 43 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787366704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:28 Heat of formation + Delta-G solvation = -77.477709 kcal Electronic energy + Delta-G solvation = -25213.455557 eV Core-core repulsion = 21259.179756 eV Total energy + Delta-G solvation = -3954.275801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58038 -41.04130 -40.30870 -38.63417 -36.81897 -36.22530 -34.54839 -34.26831 -32.24991 -31.95266 -30.01979 -29.11324 -28.09952 -25.35776 -24.90144 -23.53783 -22.37762 -22.06095 -21.51112 -20.37061 -19.06692 -18.84389 -18.26067 -17.32761 -17.25909 -16.89289 -16.67340 -16.59817 -16.25036 -16.21475 -16.02667 -15.31670 -15.11254 -14.90698 -14.74382 -14.42589 -14.18740 -14.02359 -13.82608 -13.79138 -12.99224 -12.92226 -12.78521 -12.67748 -12.44169 -12.32122 -12.24128 -12.01550 -11.79512 -11.68861 -11.58386 -11.48276 -11.11574 -10.79012 -10.07473 -9.90009 -9.31461 -9.00666 -8.25809 -6.42363 0.43700 0.45757 0.86761 1.44131 1.47609 1.51227 1.59202 2.06705 2.16124 2.43283 2.45320 2.82404 3.09805 3.37789 3.89137 3.98597 4.02340 4.06653 4.20423 4.33068 4.36259 4.40880 4.51420 4.58434 4.71049 4.74540 4.81074 4.98383 5.01314 5.18160 5.25465 5.27084 5.34996 5.38553 5.41900 5.45610 5.48661 5.75720 5.80689 5.88863 5.94936 6.31396 6.49242 6.66035 6.81471 7.25171 7.34243 7.48186 8.85997 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002213 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.065602 B =12651.088563 C =14649.281028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.122 4.122 7 C -0.054 4.054 8 C -0.117 4.117 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.518 5.518 12 N -0.535 5.535 13 C 0.703 3.297 14 O -0.629 6.629 15 N -0.713 5.713 16 C 0.281 3.719 17 C -0.554 4.554 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.290 1.290 24 H -0.261 1.261 25 C -0.079 4.079 26 C -0.211 4.211 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.434 0.566 37 H 0.438 0.562 38 H 0.402 0.598 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.268 0.732 42 H 0.141 0.859 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 -22.947 17.814 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.061 3.939 4 C -0.184 4.184 5 C -0.096 4.096 6 C -0.123 4.123 7 C -0.092 4.092 8 C -0.158 4.158 9 C 0.305 3.695 10 O -0.454 6.454 11 N -0.271 5.271 12 N -0.290 5.290 13 C 0.402 3.598 14 O -0.507 6.507 15 N -0.369 5.369 16 C 0.158 3.842 17 C -0.592 4.592 18 H 0.107 0.893 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.216 1.216 24 H -0.186 1.186 25 C -0.097 4.097 26 C -0.230 4.230 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.278 0.722 37 H 0.283 0.717 38 H 0.239 0.761 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.077 0.923 42 H 0.159 0.841 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.197 -21.889 18.217 31.387 hybrid contribution -0.320 -0.097 -0.786 0.854 sum -13.517 -21.986 17.431 31.144 Atomic orbital electron populations 1.23300 0.76676 1.05380 1.02152 1.86040 1.23294 1.27253 1.88806 1.19318 0.92868 0.84656 0.97055 1.20647 0.91644 0.99320 1.06784 1.21108 1.00826 0.90661 0.96962 1.19781 0.93705 0.94832 1.03940 1.20177 1.01221 0.92836 0.94947 1.21719 1.03313 0.90451 1.00288 1.21751 0.78263 0.88058 0.81429 1.90731 1.55664 1.67283 1.31681 1.45185 1.59527 1.11016 1.11360 1.44398 1.63500 1.13069 1.08021 1.15977 0.79723 0.83387 0.80728 1.90950 1.51240 1.23076 1.85445 1.45278 1.63278 1.23918 1.04407 1.18552 0.94019 0.92499 0.79140 1.21542 1.40806 1.06238 0.90576 0.89283 1.26049 0.94617 0.96579 1.02334 1.70133 1.42566 1.22193 1.21941 0.85201 0.79224 0.78297 0.76455 1.18539 1.21566 1.18557 1.21121 0.94146 0.97687 0.96769 1.21452 1.00964 0.92073 1.08509 0.86644 0.91831 0.91829 0.84811 0.83755 0.90706 0.90686 0.85640 0.85646 0.72215 0.71728 0.76098 0.99069 0.99074 0.92296 0.84120 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.36 10.50 -92.44 -0.97 -6.33 16 3 C 0.11 1.70 6.69 22.51 0.15 1.85 16 4 C -0.17 -2.52 9.99 22.37 0.22 -2.30 16 5 C -0.08 -1.03 9.69 22.25 0.22 -0.81 16 6 C -0.12 -1.59 5.14 -19.85 -0.10 -1.70 16 7 C -0.05 -0.71 4.63 29.85 0.14 -0.57 16 8 C -0.12 -1.31 5.68 29.85 0.17 -1.14 16 9 C 0.52 10.39 7.95 87.66 0.70 11.09 16 10 O -0.58 -16.15 15.82 -3.04 -0.05 -16.19 16 11 N -0.52 -11.29 6.26 -173.53 -1.09 -12.37 16 12 N -0.53 -16.55 6.26 -184.75 -1.16 -17.71 16 13 C 0.70 28.60 8.68 179.06 1.55 30.15 16 14 O -0.63 -31.97 17.18 -3.99 -0.07 -32.04 16 15 N -0.71 -28.57 5.51 -482.30 -2.66 -31.22 16 16 C 0.28 14.78 5.43 85.63 0.46 15.24 16 17 C -0.55 -28.37 9.28 25.60 0.24 -28.14 16 18 H 0.09 3.98 7.60 -2.91 -0.02 3.96 16 19 C 0.00 0.22 5.46 84.65 0.46 0.68 16 20 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 21 Si 0.99 40.34 29.54 68.60 2.03 42.36 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 25 C -0.08 -1.00 9.69 22.26 0.22 -0.78 16 26 C -0.21 -2.80 9.04 22.37 0.20 -2.60 16 27 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.38 7.66 -2.39 -0.02 0.36 16 29 H 0.06 0.39 7.66 -2.39 -0.02 0.38 16 30 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 33 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 34 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.43 7.21 6.70 -213.32 -1.43 5.78 16 37 H 0.44 13.67 8.10 -213.32 -1.73 11.94 16 38 H 0.40 12.48 6.24 -92.71 -0.58 11.91 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.14 1.31 6.30 -2.91 -0.02 1.29 16 Total: -1.00 -77.49 372.36 -0.61 -78.10 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -2.67 Total: 27.36 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 5.74 Total: 22.24 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.62 Total: -115.50 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -1.09 Total: -54.57 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -77.49 -0.61 -78.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.618 kcal (2) G-P(sol) polarization free energy of solvation -77.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds