Wall clock time and date at job start Tue Mar 31 2020 13:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41593 * 113.99882 * 2 1 4 4 C 1.46503 * 119.99982 * 275.33065 * 3 2 1 5 5 C 1.34781 * 120.00370 * 95.33657 * 3 2 1 6 6 O 1.21594 * 119.99938 * 186.12238 * 5 3 2 7 7 C 1.47518 * 119.99351 * 6.11847 * 5 3 2 8 8 C 1.39800 * 120.06474 * 196.11829 * 7 5 3 9 9 C 1.37600 * 119.93127 * 180.02562 * 8 7 5 10 10 C 1.39219 * 120.07171 * 0.02562 * 9 8 7 11 11 N 1.39046 * 119.93777 * 179.97438 * 10 9 8 12 12 C 1.46492 * 120.00230 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47223 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00009 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00149 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99852 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47029 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00247 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00097 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99681 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47293 * 89.99703 * 21 19 17 23 23 H 1.48499 * 109.46972 * 209.99779 * 21 19 17 24 24 H 1.48498 * 109.47449 * 329.99669 * 21 19 17 25 25 C 1.39220 * 120.13404 * 0.26683 * 10 9 8 26 26 C 1.37607 * 120.07074 * 359.45669 * 25 10 9 27 27 H 1.09000 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46897 * 300.00135 * 1 2 3 29 29 H 1.09001 * 109.47204 * 59.99851 * 1 2 3 30 30 H 1.09001 * 109.47381 * 270.00465 * 4 3 2 31 31 H 1.08994 * 109.47052 * 30.00278 * 4 3 2 32 32 H 1.09004 * 109.47216 * 150.00202 * 4 3 2 33 33 H 1.08001 * 120.03521 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.96707 * 179.97438 * 9 8 7 35 35 H 0.96996 * 119.99123 * 359.97438 * 11 10 9 36 36 H 1.09008 * 109.47192 * 300.00011 * 12 11 10 37 37 H 1.09000 * 109.47471 * 59.99610 * 12 11 10 38 38 H 0.97001 * 120.00264 * 359.97438 * 15 13 12 39 39 H 1.08993 * 109.47020 * 299.99084 * 16 15 13 40 40 H 1.08998 * 109.47173 * 59.99979 * 16 15 13 41 41 H 0.97001 * 120.00076 * 180.02562 * 20 19 17 42 42 H 1.08005 * 119.96905 * 179.70780 * 25 10 9 43 43 H 1.08007 * 120.03828 * 180.24928 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.1952 2.0107 -1.2633 5 6 2.3782 1.8651 1.1621 6 8 2.7688 3.0165 1.1755 7 6 2.3129 1.0936 2.4178 8 6 2.3684 1.7536 3.6490 9 6 2.3077 1.0313 4.8186 10 6 2.1917 -0.3555 4.7768 11 7 2.1312 -1.0827 5.9604 12 6 2.0086 -2.5419 5.9181 13 6 1.9631 -3.0831 7.3238 14 8 2.0274 -2.3246 8.2680 15 7 1.8522 -4.4101 7.5317 16 6 1.8086 -4.9362 8.8983 17 6 1.6823 -6.4373 8.8548 18 1 1.6393 -6.9484 7.9043 19 6 1.6227 -7.1584 10.0285 20 7 1.5130 -8.4685 9.9905 21 14 1.6979 -6.2747 11.6725 22 1 0.3226 -5.9236 12.1091 23 1 2.3267 -7.1623 12.6833 24 1 2.5040 -5.0355 11.5320 25 6 2.1423 -1.0161 3.5523 26 6 2.1968 -0.2989 2.3792 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.1771 1.7723 -1.6721 31 1 1.4237 1.7093 -1.9718 32 1 2.1263 3.0839 -1.0858 33 1 2.4588 2.8293 3.6821 34 1 2.3510 1.5405 5.7700 35 1 2.1702 -0.6237 6.8140 36 1 1.0922 -2.8145 5.3944 37 1 2.8660 -2.9635 5.3935 38 1 1.8011 -5.0168 6.7766 39 1 2.7247 -4.6635 9.4220 40 1 0.9509 -4.5149 9.4227 41 1 1.4708 -8.9758 10.8162 42 1 2.0571 -2.0924 3.5231 43 1 2.1544 -0.8117 1.4296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795264803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:04 Heat of formation + Delta-G solvation = -22.652736 kcal Electronic energy + Delta-G solvation = -25734.516842 eV Core-core repulsion = 21782.618431 eV Total energy + Delta-G solvation = -3951.898411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50636 -39.59184 -38.66229 -37.73540 -35.41937 -34.45816 -33.34950 -32.50909 -31.28351 -30.46848 -28.77518 -27.75446 -26.86682 -25.81319 -23.09383 -22.66312 -21.77746 -20.66893 -20.10765 -18.53689 -18.24883 -17.11228 -16.90799 -16.51346 -16.32006 -15.62551 -15.58227 -15.53341 -15.10605 -14.77700 -14.58357 -14.29557 -14.00525 -13.84839 -13.61375 -13.47693 -13.33441 -13.08906 -12.84739 -12.67650 -12.54789 -12.42211 -12.18917 -12.04035 -11.34756 -11.14065 -10.86547 -10.74916 -10.31350 -10.07853 -10.06698 -9.62855 -9.54234 -9.40282 -9.12119 -8.88826 -8.37817 -7.61183 -6.30330 -4.33802 0.91504 1.34652 1.49197 2.61431 2.90859 3.06475 3.19968 3.27485 3.34019 3.65393 3.82223 3.84587 4.24890 4.64405 4.74709 4.81405 4.83911 4.86092 4.92760 5.00745 5.04599 5.04821 5.16819 5.20326 5.25097 5.29825 5.32182 5.39563 5.52091 5.94362 5.99819 6.07236 6.18744 6.33120 6.59202 6.65988 6.92598 6.97843 7.05111 7.10446 7.24609 7.55991 7.78512 7.95664 8.33340 8.56644 8.70939 9.28574 10.81370 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.002001 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.407686 B =13990.061022 C =14749.988684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.140 6.140 3 N -0.485 5.485 4 C 0.085 3.915 5 C 0.582 3.418 6 O -0.531 6.531 7 C -0.220 4.220 8 C -0.005 4.005 9 C -0.213 4.213 10 C 0.257 3.743 11 N -0.720 5.720 12 C 0.099 3.901 13 C 0.495 3.505 14 O -0.555 6.555 15 N -0.697 5.697 16 C 0.220 3.780 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.889 5.889 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.221 4.221 26 C -0.024 4.024 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.269 0.731 42 H 0.128 0.872 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 17.629 -21.889 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.144 6.144 3 N -0.265 5.265 4 C -0.056 4.056 5 C 0.375 3.625 6 O -0.409 6.409 7 C -0.225 4.225 8 C -0.025 4.025 9 C -0.236 4.236 10 C 0.149 3.851 11 N -0.349 5.349 12 C -0.029 4.029 13 C 0.279 3.721 14 O -0.435 6.435 15 N -0.346 5.346 16 C 0.098 3.902 17 C -0.585 4.585 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.526 5.526 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.244 4.244 26 C -0.043 4.043 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.253 0.747 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.234 0.766 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.286 18.167 -21.060 27.843 hybrid contribution -0.389 -0.083 0.815 0.907 sum -1.675 18.084 -20.245 27.197 Atomic orbital electron populations 1.23396 0.81427 1.04189 1.01615 1.90535 1.20417 1.07211 1.96223 1.49853 1.59246 1.10086 1.07273 1.21895 1.02195 0.97407 0.84078 1.18435 0.76095 0.85383 0.82557 1.90803 1.48265 1.16736 1.85121 1.19354 1.16960 0.93960 0.92227 1.20889 0.91518 0.99845 0.90241 1.20517 1.12404 0.91764 0.98884 1.18108 0.89608 0.90967 0.86457 1.44496 1.78561 1.05081 1.06772 1.21191 1.03552 0.81981 0.96214 1.20354 0.77735 0.83646 0.90371 1.90659 1.51521 1.57489 1.43813 1.46130 1.71120 1.05652 1.11651 1.19554 0.97004 0.94976 0.78636 1.21057 1.53343 0.88683 0.95440 0.90121 1.24796 0.93773 0.94762 0.99249 1.69872 1.48686 1.05601 1.28473 0.86813 0.79214 0.80204 0.83421 1.19805 1.20791 1.18574 1.20695 1.12819 1.00133 0.90729 1.21806 0.90892 0.92719 0.98885 0.87256 0.92487 0.92810 0.91617 0.90684 0.89309 0.85172 0.85454 0.74715 0.89005 0.88953 0.76617 0.95484 0.95949 0.92138 0.85451 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.31 101.05 1.14 1.10 16 2 O -0.14 -1.11 7.55 -11.47 -0.09 -1.20 16 3 N -0.48 -4.50 3.35 -68.15 -0.23 -4.73 16 4 C 0.08 0.56 10.83 59.85 0.65 1.21 16 5 C 0.58 6.89 7.63 -12.48 -0.10 6.79 16 6 O -0.53 -7.59 16.00 5.28 0.08 -7.50 16 7 C -0.22 -2.51 5.83 -104.95 -0.61 -3.12 16 8 C -0.01 -0.06 9.57 -39.23 -0.38 -0.43 16 9 C -0.21 -2.34 9.87 -39.45 -0.39 -2.73 16 10 C 0.26 2.92 6.65 -83.86 -0.56 2.36 16 11 N -0.72 -8.72 5.68 -59.82 -0.34 -9.06 16 12 C 0.10 1.16 5.38 -5.20 -0.03 1.13 16 13 C 0.49 8.32 7.90 -10.99 -0.09 8.24 16 14 O -0.56 -11.38 15.67 5.55 0.09 -11.29 16 15 N -0.70 -12.75 5.55 -61.47 -0.34 -13.09 16 16 C 0.22 5.11 4.50 -5.19 -0.02 5.09 16 17 C -0.55 -14.38 9.83 -34.44 -0.34 -14.72 16 18 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 21 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 25 C -0.22 -2.27 9.28 -39.45 -0.37 -2.63 16 26 C -0.02 -0.24 8.82 -39.23 -0.35 -0.59 16 27 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.62 7.35 -51.93 -0.38 0.24 16 33 H 0.13 1.38 7.73 -52.49 -0.41 0.98 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.41 5.43 7.44 -40.82 -0.30 5.12 16 36 H 0.09 0.89 7.95 -51.92 -0.41 0.48 16 37 H 0.09 0.92 7.92 -51.93 -0.41 0.51 16 38 H 0.40 6.23 8.32 -40.82 -0.34 5.89 16 39 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 40 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 42 H 0.13 1.10 6.70 -52.48 -0.35 0.75 16 43 H 0.15 1.35 5.06 -52.54 -0.27 1.09 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -33.28 367.00 -6.47 -39.75 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.75 Total: 6.65 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.52 Total: 3.74 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.14 Total: -51.80 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.08 Total: -19.99 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.28 -6.47 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795264803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.097 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds