Wall clock time and date at job start Tue Mar 31 2020 13:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41593 * 113.99882 * 2 1 4 4 C 1.46503 * 119.99982 * 275.33065 * 3 2 1 5 5 C 1.34781 * 120.00370 * 95.33657 * 3 2 1 6 6 O 1.21594 * 119.99938 * 186.12238 * 5 3 2 7 7 C 1.47518 * 119.99351 * 6.11847 * 5 3 2 8 8 C 1.39800 * 120.06474 * 196.11829 * 7 5 3 9 9 C 1.37600 * 119.93127 * 180.02562 * 8 7 5 10 10 C 1.39219 * 120.07171 * 0.02562 * 9 8 7 11 11 N 1.39046 * 119.93777 * 179.97438 * 10 9 8 12 12 C 1.46492 * 120.00230 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47223 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00009 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00149 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99852 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47029 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00247 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00097 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99681 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47293 * 89.99703 * 21 19 17 23 23 H 1.48499 * 109.46972 * 209.99779 * 21 19 17 24 24 H 1.48498 * 109.47449 * 329.99669 * 21 19 17 25 25 C 1.39220 * 120.13404 * 0.26683 * 10 9 8 26 26 C 1.37607 * 120.07074 * 359.45669 * 25 10 9 27 27 H 1.09000 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46897 * 300.00135 * 1 2 3 29 29 H 1.09001 * 109.47204 * 59.99851 * 1 2 3 30 30 H 1.09001 * 109.47381 * 270.00465 * 4 3 2 31 31 H 1.08994 * 109.47052 * 30.00278 * 4 3 2 32 32 H 1.09004 * 109.47216 * 150.00202 * 4 3 2 33 33 H 1.08001 * 120.03521 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.96707 * 179.97438 * 9 8 7 35 35 H 0.96996 * 119.99123 * 359.97438 * 11 10 9 36 36 H 1.09008 * 109.47192 * 300.00011 * 12 11 10 37 37 H 1.09000 * 109.47471 * 59.99610 * 12 11 10 38 38 H 0.97001 * 120.00264 * 359.97438 * 15 13 12 39 39 H 1.08993 * 109.47020 * 299.99084 * 16 15 13 40 40 H 1.08998 * 109.47173 * 59.99979 * 16 15 13 41 41 H 0.97001 * 120.00076 * 180.02562 * 20 19 17 42 42 H 1.08005 * 119.96905 * 179.70780 * 25 10 9 43 43 H 1.08007 * 120.03828 * 180.24928 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.1952 2.0107 -1.2633 5 6 2.3782 1.8651 1.1621 6 8 2.7688 3.0165 1.1755 7 6 2.3129 1.0936 2.4178 8 6 2.3684 1.7536 3.6490 9 6 2.3077 1.0313 4.8186 10 6 2.1917 -0.3555 4.7768 11 7 2.1312 -1.0827 5.9604 12 6 2.0086 -2.5419 5.9181 13 6 1.9631 -3.0831 7.3238 14 8 2.0274 -2.3246 8.2680 15 7 1.8522 -4.4101 7.5317 16 6 1.8086 -4.9362 8.8983 17 6 1.6823 -6.4373 8.8548 18 1 1.6393 -6.9484 7.9043 19 6 1.6227 -7.1584 10.0285 20 7 1.5130 -8.4685 9.9905 21 14 1.6979 -6.2747 11.6725 22 1 0.3226 -5.9236 12.1091 23 1 2.3267 -7.1623 12.6833 24 1 2.5040 -5.0355 11.5320 25 6 2.1423 -1.0161 3.5523 26 6 2.1968 -0.2989 2.3792 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.1771 1.7723 -1.6721 31 1 1.4237 1.7093 -1.9718 32 1 2.1263 3.0839 -1.0858 33 1 2.4588 2.8293 3.6821 34 1 2.3510 1.5405 5.7700 35 1 2.1702 -0.6237 6.8140 36 1 1.0922 -2.8145 5.3944 37 1 2.8660 -2.9635 5.3935 38 1 1.8011 -5.0168 6.7766 39 1 2.7247 -4.6635 9.4220 40 1 0.9509 -4.5149 9.4227 41 1 1.4708 -8.9758 10.8162 42 1 2.0571 -2.0924 3.5231 43 1 2.1544 -0.8117 1.4296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795264803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:04 Heat of formation + Delta-G solvation = -46.882734 kcal Electronic energy + Delta-G solvation = -25735.567534 eV Core-core repulsion = 21782.618431 eV Total energy + Delta-G solvation = -3952.949103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34381 -40.81603 -39.63803 -38.44427 -36.52796 -35.98434 -34.45182 -34.01915 -32.13509 -31.43754 -30.22518 -28.58061 -27.70518 -26.63046 -24.24443 -23.85431 -22.95030 -21.64045 -21.32261 -19.51611 -19.26577 -18.59670 -17.75397 -17.61124 -17.20796 -16.88963 -16.79022 -16.51513 -16.35241 -15.70650 -15.49369 -15.31570 -15.07103 -14.99004 -14.76492 -14.45843 -14.26922 -14.12639 -14.00329 -13.91076 -13.57244 -13.27059 -13.22120 -13.06586 -12.74217 -12.71007 -12.05243 -11.95234 -11.66397 -11.50819 -11.18145 -11.01508 -10.92708 -10.83956 -10.11287 -10.01100 -9.92847 -8.47344 -8.40351 -6.47413 0.06443 0.53848 0.86396 1.32246 1.35526 1.46340 1.57809 1.76888 1.99660 2.27200 2.65448 2.93604 2.95272 3.04004 3.74958 3.93413 4.04285 4.10066 4.32676 4.37803 4.38327 4.41785 4.44715 4.51507 4.52778 4.60474 4.68595 4.77496 4.79653 4.84835 5.01149 5.16938 5.24141 5.25666 5.31477 5.38584 5.44101 5.52751 5.78828 6.05364 6.24149 6.35603 6.53385 6.59680 6.77266 6.97339 7.12947 7.30534 8.74065 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.002001 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.407686 B =13990.061022 C =14749.988684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 O -0.145 6.145 3 N -0.483 5.483 4 C 0.080 3.920 5 C 0.575 3.425 6 O -0.567 6.567 7 C -0.231 4.231 8 C -0.015 4.015 9 C -0.217 4.217 10 C 0.249 3.751 11 N -0.727 5.727 12 C 0.111 3.889 13 C 0.496 3.504 14 O -0.593 6.593 15 N -0.698 5.698 16 C 0.231 3.769 17 C -0.546 4.546 18 H 0.063 0.937 19 C 0.026 3.974 20 N -0.930 5.930 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.218 4.218 26 C -0.019 4.019 27 H 0.134 0.866 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.408 0.592 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.014 0.986 40 H 0.013 0.987 41 H 0.272 0.728 42 H 0.150 0.850 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 17.706 -23.261 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.148 6.148 3 N -0.262 5.262 4 C -0.059 4.059 5 C 0.369 3.631 6 O -0.448 6.448 7 C -0.236 4.236 8 C -0.035 4.035 9 C -0.240 4.240 10 C 0.141 3.859 11 N -0.356 5.356 12 C -0.016 4.016 13 C 0.283 3.717 14 O -0.475 6.475 15 N -0.347 5.347 16 C 0.107 3.893 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.175 4.175 20 N -0.569 5.569 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.241 4.241 26 C -0.038 4.038 27 H 0.152 0.848 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.250 0.750 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.168 0.832 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.736 18.230 -22.506 29.015 hybrid contribution -0.289 -0.118 1.116 1.159 sum -2.025 18.112 -21.390 28.101 Atomic orbital electron populations 1.23599 0.79848 1.05790 1.01760 1.90496 1.21974 1.06125 1.96243 1.49837 1.58489 1.10533 1.07312 1.22077 1.03612 0.96811 0.83441 1.18550 0.76038 0.85094 0.83446 1.90775 1.50079 1.18117 1.85873 1.19524 1.17207 0.94725 0.92161 1.20951 0.92019 0.99952 0.90564 1.20632 1.12223 0.92044 0.99096 1.18203 0.90109 0.90992 0.86566 1.44499 1.79236 1.05130 1.06719 1.21222 1.06155 0.81706 0.92498 1.21157 0.75856 0.82487 0.92209 1.90646 1.52829 1.58218 1.45772 1.45917 1.71812 1.06811 1.10188 1.19124 0.95844 0.93023 0.81303 1.21296 1.52102 0.90292 0.94745 0.91870 1.25591 0.93718 0.95365 1.02789 1.69976 1.50327 1.07020 1.29541 0.85880 0.79471 0.79093 0.79558 1.19072 1.20085 1.18438 1.20939 1.11843 1.01228 0.90058 1.21933 0.90241 0.92068 0.99551 0.84829 0.93519 0.91511 0.90938 0.88003 0.90110 0.85401 0.84801 0.75459 0.86063 0.86288 0.74975 0.96821 0.96859 0.91880 0.83230 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 11.31 113.37 1.28 1.18 16 2 O -0.14 -1.96 7.55 -38.77 -0.29 -2.25 16 3 N -0.48 -8.35 3.35 -487.77 -1.64 -9.98 16 4 C 0.08 0.94 10.83 127.77 1.38 2.33 16 5 C 0.57 13.41 7.63 86.69 0.66 14.07 16 6 O -0.57 -16.52 16.00 -4.01 -0.06 -16.58 16 7 C -0.23 -5.08 5.83 -20.08 -0.12 -5.19 16 8 C -0.02 -0.33 9.57 22.50 0.22 -0.12 16 9 C -0.22 -4.59 9.87 22.35 0.22 -4.37 16 10 C 0.25 5.13 6.65 38.47 0.26 5.39 16 11 N -0.73 -16.00 5.68 -343.16 -1.95 -17.95 16 12 C 0.11 2.25 5.38 85.63 0.46 2.71 16 13 C 0.50 15.75 7.90 87.66 0.69 16.44 16 14 O -0.59 -23.73 15.67 -3.05 -0.05 -23.78 16 15 N -0.70 -24.43 5.55 -466.79 -2.59 -27.02 16 16 C 0.23 10.57 4.50 85.63 0.38 10.95 16 17 C -0.55 -28.66 9.83 25.60 0.25 -28.40 16 18 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 19 C 0.03 1.41 5.47 84.65 0.46 1.88 16 20 N -0.93 -54.01 13.96 21.45 0.30 -53.71 16 21 Si 0.94 42.67 27.47 68.60 1.88 44.55 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 25 C -0.22 -3.83 9.28 22.36 0.21 -3.62 16 26 C -0.02 -0.35 8.82 22.50 0.20 -0.15 16 27 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 1.10 7.35 -2.39 -0.02 1.08 16 33 H 0.13 2.81 7.73 -2.91 -0.02 2.79 16 34 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.41 10.18 7.44 -92.71 -0.69 9.49 16 36 H 0.12 1.82 7.95 -2.38 -0.02 1.80 16 37 H 0.12 1.86 7.92 -2.39 -0.02 1.84 16 38 H 0.41 12.09 8.32 -92.71 -0.77 11.32 16 39 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 40 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 41 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.15 1.92 6.70 -2.91 -0.02 1.90 16 43 H 0.16 2.49 5.06 -3.77 -0.02 2.47 16 Total: -1.00 -72.35 367.00 1.70 -70.64 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.46 Total: 22.99 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.56 Total: 13.08 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -5.88 Total: -108.67 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.40 Total: -42.60 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -72.35 1.70 -70.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795264803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.760 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds