Wall clock time and date at job start Tue Mar 31 2020 12:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47323 * 2 1 4 4 C 1.46500 * 120.00037 * 269.99842 * 3 2 1 5 5 C 1.50700 * 109.47408 * 269.99933 * 4 3 2 6 6 H 1.08004 * 119.99700 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00418 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00292 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47009 * 60.00303 * 9 7 5 11 11 H 1.48504 * 109.47447 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47225 * 300.00289 * 9 7 5 13 13 C 1.34785 * 120.00230 * 90.00018 * 3 2 1 14 14 O 1.21282 * 119.99943 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99730 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.47080 * 179.97438 * 15 13 3 17 17 C 1.34231 * 117.00176 * 180.02562 * 16 15 13 18 18 O 1.20819 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00122 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46967 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.46965 * 179.97438 * 20 19 17 22 22 C 1.38386 * 120.00005 * 124.99984 * 21 20 19 23 23 N 1.32124 * 119.99712 * 180.02562 * 22 21 20 24 24 C 1.32158 * 120.00097 * 359.97438 * 23 22 21 25 25 C 1.38336 * 120.00075 * 0.26620 * 24 23 22 26 26 N 1.32127 * 120.00100 * 305.02162 * 21 20 19 27 27 H 1.09001 * 109.47001 * 300.00090 * 1 2 3 28 28 H 1.08996 * 109.46480 * 59.99806 * 1 2 3 29 29 H 1.08996 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47001 * 239.99910 * 2 1 3 31 31 H 1.09009 * 109.47061 * 119.99975 * 2 1 3 32 32 H 1.08998 * 109.47321 * 30.00255 * 4 3 2 33 33 H 1.09007 * 109.46981 * 150.00265 * 4 3 2 34 34 H 0.96999 * 120.00444 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46979 * 60.00103 * 15 13 3 36 36 H 1.08998 * 109.47352 * 300.00425 * 15 13 3 37 37 H 1.09000 * 109.47243 * 60.00065 * 19 17 16 38 38 H 1.08999 * 109.47190 * 300.00096 * 19 17 16 39 39 H 1.09000 * 109.47206 * 59.99895 * 20 19 17 40 40 H 1.08999 * 109.47125 * 299.99990 * 20 19 17 41 41 H 1.08005 * 120.00186 * 0.03930 * 22 21 20 42 42 H 1.08002 * 119.99718 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00403 * 179.72028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3430 1.2308 -1.0957 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.1402 0.6386 -3.5948 11 1 6.1609 2.7955 -4.7035 12 1 6.8411 2.6186 -2.3829 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9913 1.3063 2.4724 16 8 2.3066 2.1956 3.5759 17 6 2.1357 1.7119 4.8163 18 8 1.7364 0.5826 4.9746 19 6 2.4419 2.5773 6.0114 20 6 2.1648 1.7914 7.2946 21 6 2.4716 2.6567 8.4898 22 6 1.5054 2.8672 9.4579 23 7 1.7743 3.6262 10.5054 24 6 2.9660 4.1839 10.6289 25 6 3.9302 3.9775 9.6586 26 7 3.6629 3.2146 8.6131 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1383 34 1 3.6753 3.5161 -4.4440 35 1 2.6212 0.4186 2.5303 36 1 0.9433 1.0125 2.5299 37 1 1.8124 3.4669 5.9867 38 1 3.4905 2.8735 5.9865 39 1 2.7945 0.9020 7.3191 40 1 1.1162 1.4949 7.3198 41 1 0.5317 2.4109 9.3573 42 1 3.1856 4.8047 11.4850 43 1 4.9026 4.4369 9.7572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795915534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:14 Heat of formation + Delta-G solvation = -76.305382 kcal Electronic energy + Delta-G solvation = -25794.235151 eV Core-core repulsion = 21840.010186 eV Total energy + Delta-G solvation = -3954.224965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53820 -40.58395 -38.98244 -36.60958 -35.37046 -35.27651 -33.94458 -32.85232 -31.11253 -30.18881 -29.16987 -26.89558 -26.00022 -24.93741 -23.14725 -23.00291 -22.38925 -20.68975 -18.68731 -18.12563 -17.90024 -17.33898 -16.85935 -16.69272 -16.45409 -16.25530 -15.70294 -15.39686 -15.17924 -14.81783 -14.28555 -14.06267 -13.86069 -13.48756 -13.27245 -12.94527 -12.87019 -12.73339 -12.26692 -12.12976 -12.06260 -12.00061 -11.74284 -11.63898 -11.44066 -11.24298 -10.96782 -10.88657 -10.65316 -10.59872 -10.52521 -10.15795 -9.68951 -9.67833 -9.48777 -9.00825 -8.45286 -7.76757 -6.06558 -4.11547 0.31502 0.69771 2.10897 2.42476 3.23662 3.25420 3.31407 3.35801 3.39720 3.56670 3.83738 3.84660 4.03657 4.32526 4.43091 4.47657 4.64006 4.74755 4.86068 4.91083 4.95197 5.03825 5.15146 5.19851 5.24219 5.28019 5.35651 5.52804 5.57205 5.61842 5.71623 5.92331 5.98099 6.17745 6.35541 6.43286 6.83117 6.98431 7.34035 7.38337 7.45733 7.65705 7.89304 8.19378 8.28435 8.83328 8.98083 9.53424 11.01554 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.002196 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.545791 B =12749.796716 C =13726.517060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.328 6.328 17 C 0.463 3.537 18 O -0.514 6.514 19 C -0.106 4.106 20 C -0.055 4.055 21 C 0.084 3.916 22 C 0.055 3.945 23 N -0.437 5.437 24 C 0.041 3.959 25 C 0.057 3.943 26 N -0.434 5.434 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -3.448 24.703 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.243 6.243 17 C 0.307 3.693 18 O -0.403 6.403 19 C -0.144 4.144 20 C -0.093 4.093 21 C -0.057 4.057 22 C -0.105 4.105 23 N -0.151 5.151 24 C -0.118 4.118 25 C -0.103 4.103 26 N -0.150 5.150 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.188 0.812 42 H 0.187 0.813 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.559 -3.050 24.516 25.122 hybrid contribution 0.974 -0.319 -0.397 1.099 sum -3.584 -3.369 24.119 24.615 Atomic orbital electron populations 1.22233 0.96537 1.01687 1.02406 1.21509 0.93749 0.83957 1.03031 1.48214 1.63824 1.13402 1.07147 1.19326 0.96462 0.93700 0.77564 1.21385 0.96849 1.32184 1.06346 0.92448 1.24934 0.97933 0.94864 0.96355 1.69917 1.35762 1.33265 1.14360 0.86540 0.84691 0.78257 0.77831 1.20231 1.21160 1.20144 1.19729 0.79739 0.87162 0.84324 1.90720 1.44453 1.17534 1.86741 1.22974 1.02686 0.92661 0.84451 1.86570 1.78337 1.44975 1.14401 1.23669 0.74032 0.86866 0.84777 1.90658 1.42812 1.20083 1.86794 1.21255 1.06424 0.98461 0.88239 1.20329 1.04146 0.96767 0.88058 1.22214 0.90358 0.96121 0.96965 1.23679 1.00714 0.95739 0.90326 1.68474 1.19941 1.05555 1.21141 1.23803 0.89853 0.98192 0.99964 1.23833 1.01152 0.95062 0.90259 1.68286 1.19292 1.05780 1.21618 0.93147 0.91785 0.91895 0.89419 0.91749 0.94627 0.93723 0.92608 0.88648 0.88721 0.87500 0.86370 0.88315 0.88568 0.81176 0.81288 0.81108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -12.34 2.46 -175.05 -0.43 -12.77 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 10.66 7.75 -10.98 -0.09 10.58 16 14 O -0.52 -13.37 16.08 -14.10 -0.23 -13.60 16 15 C 0.05 0.79 4.50 36.01 0.16 0.96 16 16 O -0.33 -5.32 9.75 -45.91 -0.45 -5.77 16 17 C 0.46 6.02 7.96 36.00 0.29 6.31 16 18 O -0.51 -7.30 15.73 -18.75 -0.29 -7.59 16 19 C -0.11 -0.99 5.67 -27.88 -0.16 -1.15 16 20 C -0.05 -0.42 4.92 -27.88 -0.14 -0.56 16 21 C 0.08 0.68 6.18 -82.41 -0.51 0.17 16 22 C 0.06 0.42 10.85 -17.37 -0.19 0.23 16 23 N -0.44 -3.69 10.50 -13.06 -0.14 -3.83 16 24 C 0.04 0.27 11.22 -17.38 -0.20 0.07 16 25 C 0.06 0.38 11.22 -17.38 -0.20 0.18 16 26 N -0.43 -3.90 10.05 -9.29 -0.09 -4.00 16 27 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.06 0.84 6.44 -51.92 -0.33 0.51 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.30 7.42 -51.92 -0.39 0.92 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.10 1.38 7.39 -51.93 -0.38 1.00 16 36 H 0.09 1.30 7.18 -51.93 -0.37 0.93 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.12 1.13 7.96 -51.93 -0.41 0.72 16 39 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.10 0.62 7.85 -51.93 -0.41 0.21 16 41 H 0.17 0.84 7.96 -52.48 -0.42 0.42 16 42 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -36.35 375.49 -7.37 -43.72 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.01 Total: -2.27 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.11 Total: 9.32 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.08 Total: -46.25 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.97 Total: -26.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.35 -7.37 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795915534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.584 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds