Wall clock time and date at job start Tue Mar 31 2020 12:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47323 * 2 1 4 4 C 1.46500 * 120.00037 * 269.99842 * 3 2 1 5 5 C 1.50700 * 109.47408 * 269.99933 * 4 3 2 6 6 H 1.08004 * 119.99700 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00418 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99840 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00292 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47009 * 60.00303 * 9 7 5 11 11 H 1.48504 * 109.47447 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47225 * 300.00289 * 9 7 5 13 13 C 1.34785 * 120.00230 * 90.00018 * 3 2 1 14 14 O 1.21282 * 119.99943 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99730 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.47080 * 179.97438 * 15 13 3 17 17 C 1.34231 * 117.00176 * 180.02562 * 16 15 13 18 18 O 1.20819 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00122 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46967 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.46965 * 179.97438 * 20 19 17 22 22 C 1.38386 * 120.00005 * 124.99984 * 21 20 19 23 23 N 1.32124 * 119.99712 * 180.02562 * 22 21 20 24 24 C 1.32158 * 120.00097 * 359.97438 * 23 22 21 25 25 C 1.38336 * 120.00075 * 0.26620 * 24 23 22 26 26 N 1.32127 * 120.00100 * 305.02162 * 21 20 19 27 27 H 1.09001 * 109.47001 * 300.00090 * 1 2 3 28 28 H 1.08996 * 109.46480 * 59.99806 * 1 2 3 29 29 H 1.08996 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47001 * 239.99910 * 2 1 3 31 31 H 1.09009 * 109.47061 * 119.99975 * 2 1 3 32 32 H 1.08998 * 109.47321 * 30.00255 * 4 3 2 33 33 H 1.09007 * 109.46981 * 150.00265 * 4 3 2 34 34 H 0.96999 * 120.00444 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46979 * 60.00103 * 15 13 3 36 36 H 1.08998 * 109.47352 * 300.00425 * 15 13 3 37 37 H 1.09000 * 109.47243 * 60.00065 * 19 17 16 38 38 H 1.08999 * 109.47190 * 300.00096 * 19 17 16 39 39 H 1.09000 * 109.47206 * 59.99895 * 20 19 17 40 40 H 1.08999 * 109.47125 * 299.99990 * 20 19 17 41 41 H 1.08005 * 120.00186 * 0.03930 * 22 21 20 42 42 H 1.08002 * 119.99718 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00403 * 179.72028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3430 1.2308 -1.0957 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.1402 0.6386 -3.5948 11 1 6.1609 2.7955 -4.7035 12 1 6.8411 2.6186 -2.3829 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9913 1.3063 2.4724 16 8 2.3066 2.1956 3.5759 17 6 2.1357 1.7119 4.8163 18 8 1.7364 0.5826 4.9746 19 6 2.4419 2.5773 6.0114 20 6 2.1648 1.7914 7.2946 21 6 2.4716 2.6567 8.4898 22 6 1.5054 2.8672 9.4579 23 7 1.7743 3.6262 10.5054 24 6 2.9660 4.1839 10.6289 25 6 3.9302 3.9775 9.6586 26 7 3.6629 3.2146 8.6131 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1383 34 1 3.6753 3.5161 -4.4440 35 1 2.6212 0.4186 2.5303 36 1 0.9433 1.0125 2.5299 37 1 1.8124 3.4669 5.9867 38 1 3.4905 2.8735 5.9865 39 1 2.7945 0.9020 7.3191 40 1 1.1162 1.4949 7.3198 41 1 0.5317 2.4109 9.3573 42 1 3.1856 4.8047 11.4850 43 1 4.9026 4.4369 9.7572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795915534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:12 Heat of formation + Delta-G solvation = -99.991070 kcal Electronic energy + Delta-G solvation = -25795.262239 eV Core-core repulsion = 21840.010186 eV Total energy + Delta-G solvation = -3955.252053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.10679 -41.70117 -40.56058 -37.77058 -36.98350 -35.96970 -34.94043 -34.53554 -31.89883 -31.63818 -30.54980 -28.50408 -26.93702 -25.49371 -24.88143 -24.18290 -23.40576 -21.64834 -20.26152 -19.09130 -18.64889 -18.56728 -17.99740 -17.90011 -17.84145 -17.46777 -16.92636 -16.45747 -16.32325 -16.10513 -15.64633 -15.11660 -14.84664 -14.63142 -14.40784 -14.35379 -13.85955 -13.76867 -13.58347 -13.47211 -13.27900 -13.11909 -13.03023 -12.65999 -12.57344 -12.51837 -12.39472 -12.21389 -12.06668 -12.03213 -11.79108 -11.72531 -11.67469 -10.73222 -10.64598 -10.18619 -10.01771 -9.54598 -8.23389 -6.37932 -0.18812 0.15847 1.08804 1.28754 1.37116 1.41310 1.48465 1.62365 2.31942 2.44851 2.73863 3.06456 3.08384 3.38631 3.43548 3.50441 3.57862 3.87706 3.88782 3.97895 4.05384 4.09392 4.16615 4.36433 4.38633 4.43571 4.56281 4.59557 4.62619 4.88705 4.89747 4.95096 4.99159 5.03111 5.18774 5.30460 5.36764 5.45857 5.54013 5.79581 6.03893 6.32447 6.53809 6.66210 6.71271 6.82781 7.21413 7.36546 8.83802 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.002196 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.545791 B =12749.796716 C =13726.517060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.497 3.503 14 O -0.579 6.579 15 C 0.062 3.938 16 O -0.353 6.353 17 C 0.467 3.533 18 O -0.524 6.524 19 C -0.098 4.098 20 C -0.046 4.046 21 C 0.073 3.927 22 C 0.051 3.949 23 N -0.463 5.463 24 C 0.043 3.957 25 C 0.052 3.948 26 N -0.462 5.462 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.191 0.809 42 H 0.199 0.801 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -4.992 26.458 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.014 4.014 16 O -0.269 6.269 17 C 0.311 3.689 18 O -0.413 6.413 19 C -0.136 4.136 20 C -0.085 4.085 21 C -0.067 4.067 22 C -0.108 4.108 23 N -0.177 5.177 24 C -0.116 4.116 25 C -0.108 4.108 26 N -0.178 5.178 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.208 0.792 42 H 0.216 0.784 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.369 -4.662 26.287 27.052 hybrid contribution 0.886 0.186 -0.872 1.257 sum -3.483 -4.476 25.415 26.040 Atomic orbital electron populations 1.22175 0.94280 1.03793 1.01855 1.21869 0.95591 0.80945 1.04402 1.48215 1.63591 1.15272 1.05688 1.18783 0.95572 0.91641 0.79822 1.21673 0.97831 1.32273 1.06603 0.92744 1.25858 1.02426 0.94457 0.96428 1.70038 1.37801 1.34019 1.14793 0.85469 0.78965 0.79059 0.77331 1.18388 1.20338 1.20409 1.20624 0.78298 0.86656 0.85955 1.90681 1.47162 1.20285 1.87791 1.22817 1.04775 0.91986 0.81872 1.86582 1.78994 1.45794 1.15483 1.24248 0.73302 0.87102 0.84246 1.90646 1.43389 1.20614 1.86667 1.21324 1.06453 0.98531 0.87308 1.20279 1.04946 0.96172 0.87068 1.22219 0.90530 0.96645 0.97310 1.23992 1.01428 0.95490 0.89910 1.68521 1.21048 1.06415 1.21728 1.24317 0.89110 0.97594 1.00592 1.24309 1.02372 0.94521 0.89634 1.68265 1.19930 1.06717 1.22886 0.92315 0.93769 0.88371 0.90089 0.88320 0.95237 0.98307 0.92349 0.86492 0.85839 0.86262 0.86632 0.88951 0.87051 0.79174 0.78374 0.78540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.09 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -25.09 2.46 -826.13 -2.03 -27.12 16 4 C 0.26 14.12 5.16 85.63 0.44 14.56 16 5 C -0.55 -31.38 9.39 25.60 0.24 -31.14 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 9 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.50 21.21 7.75 87.66 0.68 21.88 16 14 O -0.58 -31.15 16.08 15.76 0.25 -30.90 16 15 C 0.06 1.89 4.50 71.24 0.32 2.21 16 16 O -0.35 -11.15 9.75 -45.08 -0.44 -11.59 16 17 C 0.47 11.45 7.96 71.23 0.57 12.02 16 18 O -0.52 -13.72 15.73 21.98 0.35 -13.38 16 19 C -0.10 -1.74 5.67 29.85 0.17 -1.57 16 20 C -0.05 -0.66 4.92 29.85 0.15 -0.51 16 21 C 0.07 1.10 6.18 42.55 0.26 1.36 16 22 C 0.05 0.69 10.85 84.68 0.92 1.61 16 23 N -0.46 -7.14 10.50 -195.22 -2.05 -9.19 16 24 C 0.04 0.48 11.22 84.67 0.95 1.43 16 25 C 0.05 0.61 11.22 84.67 0.95 1.56 16 26 N -0.46 -7.81 10.05 -183.29 -1.84 -9.66 16 27 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 31 H 0.10 2.26 6.44 -2.38 -0.02 2.24 16 32 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.00 -0.07 7.42 -2.38 -0.02 -0.09 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.12 3.06 7.39 -2.38 -0.02 3.05 16 36 H 0.12 3.04 7.18 -2.39 -0.02 3.03 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.12 2.14 7.96 -2.39 -0.02 2.12 16 39 H 0.09 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.11 1.21 7.85 -2.39 -0.02 1.19 16 41 H 0.19 1.54 7.96 -2.91 -0.02 1.52 16 42 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -81.94 375.49 4.93 -77.02 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.02 Total: 9.16 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 7.36 Total: 24.44 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -5.64 Total: -101.69 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: 0.16 Total: -55.87 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -81.94 4.93 -77.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795915534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.974 kcal (2) G-P(sol) polarization free energy of solvation -81.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds