Wall clock time and date at job start Tue Mar 31 2020 13:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40299 * 126.09362 * 2 1 4 4 C 1.31070 * 108.27239 * 179.97438 * 3 2 1 5 5 C 1.39298 * 108.07712 * 359.97438 * 4 3 2 6 6 C 1.34328 * 126.09082 * 179.97438 * 2 1 3 7 7 C 1.50818 * 128.03622 * 0.11834 * 6 2 1 8 8 C 1.53389 * 108.36889 * 163.33205 * 7 6 2 9 9 H 1.09000 * 109.49812 * 289.98363 * 8 7 6 10 10 C 1.50702 * 109.45491 * 169.99144 * 8 7 6 11 11 O 1.20826 * 119.99627 * 359.97438 * 10 8 7 12 12 O 1.34228 * 120.00004 * 179.97438 * 10 8 7 13 13 C 1.45198 * 117.00137 * 180.02562 * 12 10 8 14 14 C 1.50692 * 109.47232 * 179.97438 * 13 12 10 15 15 O 1.21278 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99690 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99551 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46960 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99827 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99978 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00118 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46834 * 120.00291 * 22 20 18 25 25 H 1.48501 * 109.47045 * 240.00285 * 22 20 18 26 26 C 1.53112 * 109.48910 * 49.99959 * 8 7 6 27 27 C 1.50837 * 127.89905 * 180.02562 * 5 4 3 28 28 H 1.08993 * 109.47003 * 270.00077 * 1 2 3 29 29 H 1.08995 * 109.47000 * 30.00188 * 1 2 3 30 30 H 1.09005 * 109.46930 * 150.00160 * 1 2 3 31 31 H 1.07995 * 125.96110 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.68104 * 283.10671 * 7 6 2 33 33 H 1.08999 * 109.68859 * 43.62892 * 7 6 2 34 34 H 1.08998 * 109.47030 * 300.00118 * 13 12 10 35 35 H 1.08999 * 109.47070 * 59.99737 * 13 12 10 36 36 H 0.96993 * 120.00223 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.47210 * 300.00134 * 17 16 14 38 38 H 1.08999 * 109.47446 * 60.00094 * 17 16 14 39 39 H 0.97003 * 120.00369 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.46468 * 169.69469 * 26 8 7 41 41 H 1.08998 * 109.46064 * 49.71153 * 26 8 7 42 42 H 1.09000 * 109.68062 * 43.70387 * 27 5 4 43 43 H 1.09003 * 109.71277 * 283.16550 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7326 0.0006 5 6 3.5455 -0.6604 0.0015 6 6 2.2563 -1.0855 0.0005 7 6 1.8438 -2.5362 -0.0013 8 6 3.0537 -3.3822 -0.4175 9 1 3.2689 -3.2148 -1.4728 10 6 2.7475 -4.8406 -0.1927 11 8 1.6745 -5.1707 0.2541 12 8 3.6668 -5.7727 -0.4888 13 6 3.3031 -7.1575 -0.2472 14 6 4.4504 -8.0535 -0.6364 15 8 5.4742 -7.5724 -1.0739 16 7 4.3393 -9.3895 -0.4973 17 6 5.4550 -10.2606 -0.8752 18 6 5.0774 -11.6979 -0.6245 19 1 4.1039 -11.9383 -0.2234 20 6 5.9747 -12.7057 -0.9072 21 7 7.1603 -12.4129 -1.3952 22 14 5.5069 -14.4872 -0.5957 23 1 4.1281 -14.5484 -0.0475 24 1 5.5659 -15.2448 -1.8716 25 1 6.4546 -15.0847 0.3790 26 6 4.2702 -2.9811 0.4212 27 6 4.7399 -1.5816 0.0030 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4106 1.3707 0.0003 32 1 1.5178 -2.8264 0.9975 33 1 1.0300 -2.6857 -0.7109 34 1 3.0771 -7.2945 0.8103 35 1 2.4259 -7.4118 -0.8421 36 1 3.5207 -9.7742 -0.1470 37 1 5.6807 -10.1237 -1.9327 38 1 6.3323 -10.0060 -0.2806 39 1 7.7918 -13.1219 -1.5937 40 1 5.0755 -3.6976 0.2589 41 1 3.9975 -2.9741 1.4764 42 1 5.4832 -1.2178 0.7123 43 1 5.1744 -1.6218 -0.9959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798765927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:08 Heat of formation + Delta-G solvation = -56.938004 kcal Electronic energy + Delta-G solvation = -25962.325787 eV Core-core repulsion = 22008.940655 eV Total energy + Delta-G solvation = -3953.385132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.92409 -40.71479 -38.82257 -37.00570 -36.24632 -34.28002 -34.01739 -32.43975 -30.71867 -30.39325 -29.08698 -26.95939 -26.76210 -24.70408 -22.90373 -22.54992 -21.30647 -20.75958 -19.97530 -19.07194 -18.01067 -17.52325 -16.96382 -16.67938 -16.27940 -15.86961 -15.44680 -15.10430 -14.87744 -14.66820 -14.49297 -14.23931 -14.03421 -13.80932 -13.42567 -13.20662 -13.07489 -12.89500 -12.77029 -12.55750 -12.20769 -12.03594 -11.93196 -11.80264 -11.29188 -11.12003 -11.01373 -10.96815 -10.82015 -10.74394 -10.52305 -10.37042 -9.58054 -9.44926 -9.21554 -8.81344 -8.50999 -8.02066 -6.22143 -4.29609 1.52698 1.99830 2.06747 2.39993 2.49821 3.13988 3.20591 3.27892 3.30767 3.84527 4.09246 4.20334 4.27138 4.31420 4.41665 4.61755 4.74755 4.77349 4.84050 4.97032 5.00601 5.06122 5.10201 5.13974 5.17344 5.19451 5.24002 5.30358 5.48120 5.55829 5.63030 5.86628 5.90484 5.98818 6.26064 6.37232 6.68162 7.19558 7.27245 7.39550 7.42951 7.53305 7.60963 7.89282 8.46671 8.68341 8.93108 9.36967 10.87979 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.038641 B = 0.001933 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.453802 B =14482.556868 C =15081.938645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 N -0.302 5.302 4 C 0.056 3.944 5 C -0.240 4.240 6 C 0.086 3.914 7 C -0.039 4.039 8 C -0.070 4.070 9 H 0.118 0.882 10 C 0.468 3.532 11 O -0.512 6.512 12 O -0.324 6.324 13 C 0.048 3.952 14 C 0.499 3.501 15 O -0.533 6.533 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.115 4.115 27 C -0.037 4.037 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.184 0.816 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 23.549 3.607 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.148 5.148 3 N -0.123 5.123 4 C -0.128 4.128 5 C -0.252 4.252 6 C -0.043 4.043 7 C -0.078 4.078 8 C -0.090 4.090 9 H 0.136 0.864 10 C 0.310 3.690 11 O -0.400 6.400 12 O -0.238 6.238 13 C -0.030 4.030 14 C 0.282 3.718 15 O -0.411 6.411 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.152 4.152 27 C -0.075 4.075 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.201 0.799 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.517 24.684 3.351 27.878 hybrid contribution -0.324 -1.948 0.339 2.004 sum -12.841 22.736 3.690 26.370 Atomic orbital electron populations 1.21884 0.74286 1.04576 1.03553 1.48173 1.06480 1.03356 1.56812 1.77536 1.01610 1.07379 1.25773 1.23588 0.95215 0.94431 0.99606 1.19979 0.94128 0.93961 1.17094 1.20702 0.91174 0.90254 1.02138 1.20131 0.97035 0.86433 1.04224 1.20987 0.97328 0.86401 1.04285 0.86413 1.23590 0.82053 0.89225 0.74089 1.90664 1.24838 1.82872 1.41650 1.86556 1.43932 1.16227 1.77119 1.22890 0.98299 0.78462 1.03317 1.19877 0.88118 0.83533 0.80262 1.90712 1.30253 1.74886 1.45204 1.46373 1.20427 1.04857 1.64027 1.19185 0.83931 0.87339 0.96476 1.21245 1.01546 0.90429 1.45139 0.91712 1.24956 0.94709 0.99716 0.94638 1.69980 1.06260 1.33312 1.42585 0.86337 0.78584 0.83815 0.78029 1.19614 1.20765 1.20753 1.21676 0.96272 0.97933 0.99362 1.19992 0.93947 0.91403 1.02196 0.90589 0.89182 0.89393 0.79940 0.88416 0.89402 0.88469 0.88510 0.77433 0.95238 0.95220 0.92404 0.89015 0.90925 0.90263 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.32 59.85 0.68 1.22 16 2 N -0.37 -3.45 4.00 -63.88 -0.26 -3.70 16 3 N -0.30 -3.31 12.59 30.54 0.38 -2.93 16 4 C 0.06 0.53 12.00 -17.48 -0.21 0.32 16 5 C -0.24 -2.21 5.91 -105.05 -0.62 -2.83 16 6 C 0.09 0.79 6.73 -82.33 -0.55 0.24 16 7 C -0.04 -0.32 4.63 -27.62 -0.13 -0.45 16 8 C -0.07 -0.64 2.60 -91.51 -0.24 -0.88 16 9 H 0.12 0.97 8.11 -51.93 -0.42 0.55 16 10 C 0.47 5.65 7.25 36.01 0.26 5.91 16 11 O -0.51 -6.92 15.57 -18.75 -0.29 -7.22 16 12 O -0.32 -4.70 9.47 -45.90 -0.43 -5.14 16 13 C 0.05 0.69 5.94 36.00 0.21 0.90 16 14 C 0.50 9.64 7.91 -10.99 -0.09 9.55 16 15 O -0.53 -12.61 16.50 -14.10 -0.23 -12.84 16 16 N -0.71 -14.20 5.55 -61.47 -0.34 -14.54 16 17 C 0.25 6.44 5.43 -5.19 -0.03 6.41 16 18 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.88 -25.53 13.29 55.43 0.74 -24.80 16 22 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.11 -0.98 5.19 -26.45 -0.14 -1.12 16 27 C -0.04 -0.28 6.28 -27.59 -0.17 -0.46 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.33 7.57 -51.93 -0.39 -0.06 16 31 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 33 H 0.09 0.63 7.76 -51.93 -0.40 0.23 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 36 H 0.39 6.60 8.32 -40.82 -0.34 6.27 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 41 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -35.03 368.38 -7.47 -42.50 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.13 Total: 1.96 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.44 Total: 5.73 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.52 Total: -45.97 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.96 Total: -25.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.03 -7.47 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798765927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.433 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds