Wall clock time and date at job start Tue Mar 31 2020 13:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46894 * 110.99841 * 2 1 4 4 C 1.53007 * 109.47168 * 66.04607 * 3 2 1 5 5 C 1.50694 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00171 * 270.02305 * 5 4 3 7 7 C 1.38217 * 120.00124 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99907 * 359.76573 * 7 6 5 9 9 C 1.38216 * 119.99766 * 0.46893 * 8 7 6 10 10 N 1.48026 * 119.99744 * 179.78745 * 9 8 7 11 11 O 1.21799 * 119.99956 * 179.72731 * 10 9 8 12 12 O 1.21802 * 120.00016 * 359.44228 * 10 9 8 13 13 C 1.38215 * 120.00134 * 89.99890 * 5 4 3 14 14 C 1.46901 * 110.99808 * 236.04747 * 2 1 3 15 15 C 1.50703 * 109.47094 * 293.95246 * 14 2 1 16 16 O 1.21280 * 120.00029 * 0.02562 * 15 14 2 17 17 N 1.34774 * 119.99694 * 179.97438 * 15 14 2 18 18 C 1.46494 * 119.99876 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47362 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99596 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00022 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00502 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47247 * 89.99799 * 23 21 19 25 25 H 1.48498 * 109.47548 * 209.99901 * 23 21 19 26 26 H 1.48509 * 109.47001 * 329.99829 * 23 21 19 27 27 H 1.09001 * 109.46842 * 59.99932 * 1 2 3 28 28 H 1.09000 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47058 * 299.99905 * 1 2 3 30 30 H 1.09008 * 109.47336 * 306.04836 * 3 2 1 31 31 H 1.09000 * 109.47331 * 186.04590 * 3 2 1 32 32 H 1.09000 * 109.47061 * 59.99882 * 4 3 2 33 33 H 1.09000 * 109.46981 * 300.00198 * 4 3 2 34 34 H 1.08001 * 120.00180 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.99804 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.00234 * 180.24572 * 8 7 6 37 37 H 1.08005 * 119.99743 * 0.02562 * 13 5 4 38 38 H 1.09007 * 109.47138 * 53.95549 * 14 2 1 39 39 H 1.08997 * 109.46600 * 173.95225 * 14 2 1 40 40 H 0.97007 * 119.99947 * 0.02562 * 17 15 14 41 41 H 1.09007 * 109.47432 * 300.00447 * 18 17 15 42 42 H 1.08997 * 109.47175 * 60.00654 * 18 17 15 43 43 H 0.97000 * 120.00607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4641 1.3186 6 6 3.4414 3.7168 1.8046 7 6 3.9374 5.0069 1.8043 8 6 3.1659 6.0440 1.3136 9 6 1.8950 5.7921 0.8323 10 7 1.0672 6.9032 0.3113 11 8 -0.0509 6.6805 -0.1175 12 8 1.5022 8.0409 0.3162 13 6 1.3989 4.5016 0.8326 14 6 1.9955 -0.7660 -1.1376 15 6 1.6370 -2.2204 -0.9729 16 8 1.0048 -2.5831 -0.0035 17 7 2.0180 -3.1179 -1.9033 18 6 1.6700 -4.5319 -1.7430 19 6 2.2099 -5.3177 -2.9101 20 1 2.7579 -4.8141 -3.6928 21 6 2.0043 -6.6792 -2.9786 22 7 1.3375 -7.2924 -2.0253 23 14 2.6730 -7.6531 -4.4257 24 1 4.0450 -8.1266 -4.1120 25 1 1.7935 -8.8211 -4.6851 26 1 2.7120 -6.7856 -5.6304 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9274 -0.8309 31 1 3.0798 1.3444 -0.1082 32 1 2.0658 1.5015 2.1492 33 1 0.5472 2.0844 1.4265 34 1 4.0456 2.9061 2.1844 35 1 4.9288 5.2043 2.1843 36 1 3.5549 7.0515 1.3098 37 1 0.4072 4.3042 0.4530 38 1 1.5611 -0.3872 -2.0629 39 1 3.0797 -0.6610 -1.1756 40 1 2.5234 -2.8277 -2.6789 41 1 2.1051 -4.9105 -0.8180 42 1 0.5858 -4.6371 -1.7042 43 1 1.1926 -8.2503 -2.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801602005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:07 Heat of formation + Delta-G solvation = -13.154282 kcal Electronic energy + Delta-G solvation = -25401.090678 eV Core-core repulsion = 21449.604151 eV Total energy + Delta-G solvation = -3951.486528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52254 -40.18816 -39.18906 -37.11187 -36.89098 -34.25602 -33.77125 -32.37585 -32.34637 -29.73495 -28.38782 -26.97418 -26.88008 -25.36992 -23.25236 -22.80561 -22.03205 -21.11190 -19.70608 -19.25361 -18.93613 -17.86366 -17.17490 -17.09953 -16.32720 -16.15143 -15.66943 -15.52575 -15.08972 -14.72067 -14.53024 -14.47151 -13.93135 -13.57864 -13.40714 -13.32894 -12.74820 -12.56001 -12.38311 -12.15330 -12.00033 -11.93617 -11.85498 -11.65784 -11.51663 -11.47401 -11.25652 -11.13155 -11.00400 -10.87344 -10.34287 -10.10101 -9.69584 -9.43124 -9.07212 -8.76563 -8.34924 -7.89995 -6.19895 -4.27054 -0.57468 0.39373 0.94305 1.02263 2.74321 3.21423 3.27614 3.29799 3.32948 3.48531 3.87635 3.96639 4.19351 4.27344 4.34838 4.39483 4.40816 4.57668 4.75302 4.85905 5.02122 5.16154 5.18315 5.19033 5.25629 5.30855 5.35959 5.45683 5.51754 5.56771 5.61370 5.65828 5.78477 5.81620 6.06895 6.22650 6.83446 6.97162 7.27623 7.28335 7.40961 7.48417 7.63715 7.93758 8.59352 8.75318 9.07940 9.39844 10.90209 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.001771 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.230425 B =15803.175199 C =15903.145707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.060 3.940 4 C -0.081 4.081 5 C -0.072 4.072 6 C -0.062 4.062 7 C -0.114 4.114 8 C -0.063 4.063 9 C -0.043 4.043 10 N 0.028 4.972 11 O -0.159 6.159 12 O -0.162 6.162 13 C -0.054 4.054 14 C 0.035 3.965 15 C 0.499 3.501 16 O -0.539 6.539 17 N -0.715 5.715 18 C 0.251 3.749 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.019 0.981 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 25.882 6.660 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.069 4.069 4 C -0.119 4.119 5 C -0.074 4.074 6 C -0.080 4.080 7 C -0.133 4.133 8 C -0.082 4.082 9 C -0.125 4.125 10 N 0.547 4.453 11 O -0.375 6.375 12 O -0.378 6.378 13 C -0.073 4.073 14 C -0.096 4.096 15 C 0.283 3.717 16 O -0.417 6.417 17 N -0.364 5.364 18 C 0.131 3.869 19 C -0.583 4.583 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.038 0.962 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.222 0.778 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.299 24.627 8.086 26.456 hybrid contribution 0.137 0.284 -2.060 2.084 sum 5.435 24.911 6.027 26.199 Atomic orbital electron populations 1.22641 0.86374 1.04600 0.99663 1.61597 1.09049 1.11561 1.42338 1.22116 1.00487 0.88613 0.95645 1.20698 1.02195 0.89332 0.99629 1.19974 0.94017 0.95734 0.97661 1.21668 0.94556 0.97527 0.94286 1.21252 1.00665 0.91720 0.99644 1.21086 0.90843 1.02002 0.94233 1.21132 0.94096 0.87354 1.09959 1.43664 1.01076 1.02197 0.98326 1.94562 1.04979 1.90293 1.47711 1.94537 1.76075 1.07009 1.60176 1.21010 1.01415 0.89288 0.95560 1.22032 1.01538 0.93297 0.92767 1.20253 0.80728 0.87169 0.83592 1.90629 1.40154 1.80503 1.30375 1.46462 1.55683 1.10565 1.23675 1.19087 0.96474 0.73970 0.97411 1.21226 1.36848 0.93011 1.07172 0.91925 1.24954 0.94928 0.97592 0.96562 1.69970 1.39453 1.10173 1.32626 0.86415 0.78820 0.79540 0.82124 1.20455 1.20986 1.19773 0.96209 0.88718 0.91481 0.94661 0.90459 0.88725 0.89830 0.83598 0.83405 0.83051 0.82992 0.92364 0.88393 0.77825 0.95525 0.95600 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.96 60.07 0.54 0.73 16 2 N -0.52 -6.49 4.50 -244.35 -1.10 -7.59 16 3 C 0.06 0.51 4.94 -3.82 -0.02 0.50 16 4 C -0.08 -0.57 5.27 -27.88 -0.15 -0.72 16 5 C -0.07 -0.46 5.13 -104.63 -0.54 -0.99 16 6 C -0.06 -0.30 9.70 -39.58 -0.38 -0.68 16 7 C -0.11 -0.49 10.05 -39.58 -0.40 -0.89 16 8 C -0.06 -0.39 9.56 -39.58 -0.38 -0.76 16 9 C -0.04 -0.36 6.85 -79.95 -0.55 -0.91 16 10 N 0.03 0.31 4.45 33.96 0.15 0.46 16 11 O -0.16 -1.93 18.45 -29.46 -0.54 -2.47 16 12 O -0.16 -1.88 18.45 -29.46 -0.54 -2.42 16 13 C -0.05 -0.40 9.21 -39.58 -0.36 -0.77 16 14 C 0.03 0.46 5.45 -4.97 -0.03 0.43 16 15 C 0.50 9.41 7.52 -10.98 -0.08 9.33 16 16 O -0.54 -12.33 14.33 5.56 0.08 -12.25 16 17 N -0.71 -14.43 5.55 -61.47 -0.34 -14.77 16 18 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 19 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 20 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.88 -25.76 13.29 55.43 0.74 -25.03 16 23 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 1.54 5.82 -51.93 -0.30 1.23 16 29 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 30 H 0.04 0.30 8.12 -51.92 -0.42 -0.12 16 31 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 32 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.08 0.59 6.50 -51.93 -0.34 0.26 16 34 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 35 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 36 H 0.15 0.75 7.61 -52.49 -0.40 0.35 16 37 H 0.15 1.09 7.61 -52.48 -0.40 0.69 16 38 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 39 H 0.10 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -33.43 371.66 -9.62 -43.05 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.85 Total: 1.32 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.79 Total: -1.44 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.55 Total: -46.93 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.01 Total: -17.14 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.43 -9.62 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801602005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.899 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds