Wall clock time and date at job start Tue Mar 31 2020 13:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46894 * 110.99841 * 2 1 4 4 C 1.53007 * 109.47168 * 66.04607 * 3 2 1 5 5 C 1.50694 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00171 * 270.02305 * 5 4 3 7 7 C 1.38217 * 120.00124 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99907 * 359.76573 * 7 6 5 9 9 C 1.38216 * 119.99766 * 0.46893 * 8 7 6 10 10 N 1.48026 * 119.99744 * 179.78745 * 9 8 7 11 11 O 1.21799 * 119.99956 * 179.72731 * 10 9 8 12 12 O 1.21802 * 120.00016 * 359.44228 * 10 9 8 13 13 C 1.38215 * 120.00134 * 89.99890 * 5 4 3 14 14 C 1.46901 * 110.99808 * 236.04747 * 2 1 3 15 15 C 1.50703 * 109.47094 * 293.95246 * 14 2 1 16 16 O 1.21280 * 120.00029 * 0.02562 * 15 14 2 17 17 N 1.34774 * 119.99694 * 179.97438 * 15 14 2 18 18 C 1.46494 * 119.99876 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47362 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99596 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00022 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00502 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47247 * 89.99799 * 23 21 19 25 25 H 1.48498 * 109.47548 * 209.99901 * 23 21 19 26 26 H 1.48509 * 109.47001 * 329.99829 * 23 21 19 27 27 H 1.09001 * 109.46842 * 59.99932 * 1 2 3 28 28 H 1.09000 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47058 * 299.99905 * 1 2 3 30 30 H 1.09008 * 109.47336 * 306.04836 * 3 2 1 31 31 H 1.09000 * 109.47331 * 186.04590 * 3 2 1 32 32 H 1.09000 * 109.47061 * 59.99882 * 4 3 2 33 33 H 1.09000 * 109.46981 * 300.00198 * 4 3 2 34 34 H 1.08001 * 120.00180 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.99804 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.00234 * 180.24572 * 8 7 6 37 37 H 1.08005 * 119.99743 * 0.02562 * 13 5 4 38 38 H 1.09007 * 109.47138 * 53.95549 * 14 2 1 39 39 H 1.08997 * 109.46600 * 173.95225 * 14 2 1 40 40 H 0.97007 * 119.99947 * 0.02562 * 17 15 14 41 41 H 1.09007 * 109.47432 * 300.00447 * 18 17 15 42 42 H 1.08997 * 109.47175 * 60.00654 * 18 17 15 43 43 H 0.97000 * 120.00607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4641 1.3186 6 6 3.4414 3.7168 1.8046 7 6 3.9374 5.0069 1.8043 8 6 3.1659 6.0440 1.3136 9 6 1.8950 5.7921 0.8323 10 7 1.0672 6.9032 0.3113 11 8 -0.0509 6.6805 -0.1175 12 8 1.5022 8.0409 0.3162 13 6 1.3989 4.5016 0.8326 14 6 1.9955 -0.7660 -1.1376 15 6 1.6370 -2.2204 -0.9729 16 8 1.0048 -2.5831 -0.0035 17 7 2.0180 -3.1179 -1.9033 18 6 1.6700 -4.5319 -1.7430 19 6 2.2099 -5.3177 -2.9101 20 1 2.7579 -4.8141 -3.6928 21 6 2.0043 -6.6792 -2.9786 22 7 1.3375 -7.2924 -2.0253 23 14 2.6730 -7.6531 -4.4257 24 1 4.0450 -8.1266 -4.1120 25 1 1.7935 -8.8211 -4.6851 26 1 2.7120 -6.7856 -5.6304 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9274 -0.8309 31 1 3.0798 1.3444 -0.1082 32 1 2.0658 1.5015 2.1492 33 1 0.5472 2.0844 1.4265 34 1 4.0456 2.9061 2.1844 35 1 4.9288 5.2043 2.1843 36 1 3.5549 7.0515 1.3098 37 1 0.4072 4.3042 0.4530 38 1 1.5611 -0.3872 -2.0629 39 1 3.0797 -0.6610 -1.1756 40 1 2.5234 -2.8277 -2.6789 41 1 2.1051 -4.9105 -0.8180 42 1 0.5858 -4.6371 -1.7042 43 1 1.1926 -8.2503 -2.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801602005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:07 Heat of formation + Delta-G solvation = -35.765725 kcal Electronic energy + Delta-G solvation = -25402.071184 eV Core-core repulsion = 21449.604151 eV Total energy + Delta-G solvation = -3952.467033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.27538 -40.84147 -40.49040 -38.14347 -37.71616 -36.07156 -34.48008 -34.32592 -32.84236 -30.72120 -29.59766 -28.40432 -27.64665 -26.35194 -24.54986 -23.66042 -23.00754 -21.88091 -21.29147 -19.93652 -19.69296 -18.89877 -18.63235 -17.59322 -17.52344 -17.19545 -16.91540 -16.67870 -16.30879 -15.93057 -15.74363 -15.26354 -15.04667 -14.42720 -14.37700 -14.14936 -14.07896 -13.83422 -13.74077 -13.19013 -13.01319 -12.91475 -12.78946 -12.75433 -12.62582 -12.48598 -12.38110 -12.35473 -12.25104 -12.21793 -11.76478 -11.47951 -10.79527 -10.67997 -10.53854 -10.13634 -9.78621 -9.29161 -8.28908 -6.45424 -1.25940 -0.04390 0.29996 0.36807 1.43259 1.45411 1.56529 1.82760 2.22895 2.32651 2.48130 3.04543 3.05976 3.39838 3.50399 3.80158 3.91718 3.95651 3.97499 4.02858 4.18047 4.27639 4.33721 4.39043 4.53904 4.59144 4.61561 4.70272 4.78575 4.88495 5.02061 5.06042 5.11907 5.12853 5.23090 5.25943 5.31921 5.50625 5.54309 5.71311 5.85912 5.91897 6.10669 6.42124 6.66298 6.97511 7.24461 7.56169 8.83101 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.001771 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.230425 B =15803.175199 C =15903.145707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.062 3.938 4 C -0.075 4.075 5 C -0.074 4.074 6 C -0.050 4.050 7 C -0.103 4.103 8 C -0.063 4.063 9 C -0.064 4.064 10 N 0.030 4.970 11 O -0.198 6.198 12 O -0.173 6.173 13 C -0.062 4.062 14 C 0.049 3.951 15 C 0.493 3.507 16 O -0.584 6.584 17 N -0.711 5.711 18 C 0.269 3.731 19 C -0.556 4.556 20 H 0.084 0.916 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.984 3.016 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.256 1.256 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.408 0.592 41 H -0.014 1.014 42 H -0.015 1.015 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 27.031 5.831 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.065 4.065 4 C -0.112 4.112 5 C -0.075 4.075 6 C -0.068 4.068 7 C -0.121 4.121 8 C -0.082 4.082 9 C -0.147 4.147 10 N 0.544 4.456 11 O -0.407 6.407 12 O -0.389 6.389 13 C -0.081 4.081 14 C -0.082 4.082 15 C 0.280 3.720 16 O -0.465 6.465 17 N -0.362 5.362 18 C 0.146 3.854 19 C -0.594 4.594 20 H 0.102 0.898 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.807 3.193 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.179 1.179 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.190 0.810 35 H 0.201 0.799 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.243 0.757 41 H 0.004 0.996 42 H 0.003 0.997 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.275 25.833 7.220 28.070 hybrid contribution -0.740 -0.053 -1.670 1.828 sum 7.534 25.780 5.550 27.426 Atomic orbital electron populations 1.22511 0.87083 1.02168 1.01113 1.61549 1.08689 1.13902 1.42254 1.22195 1.01372 0.86293 0.96632 1.20603 1.02050 0.89638 0.98948 1.19889 0.94659 0.94722 0.98227 1.22036 0.93771 0.98578 0.92446 1.21650 1.01598 0.90730 0.98120 1.21400 0.89929 1.03313 0.93519 1.21329 0.94834 0.86631 1.11923 1.44067 1.01057 1.02708 0.97786 1.94547 1.06219 1.90492 1.49458 1.94500 1.75982 1.08139 1.60313 1.21047 1.01565 0.89396 0.96068 1.21961 1.03553 0.88582 0.94118 1.21381 0.79062 0.89432 0.82096 1.90616 1.41860 1.81789 1.32201 1.46199 1.56344 1.08573 1.25092 1.18485 0.93611 0.77452 0.95896 1.21636 1.36701 0.93511 1.07504 0.89782 1.26066 0.94986 0.98993 0.99654 1.70135 1.41052 1.10624 1.35125 0.85167 0.78011 0.77660 0.78438 1.19569 1.21092 1.17939 0.94989 0.92938 0.89912 0.94132 0.88636 0.88427 0.90359 0.81003 0.79944 0.82051 0.83623 0.90000 0.85153 0.75678 0.99563 0.99699 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.96 127.69 1.14 1.62 16 2 N -0.54 -12.39 4.50 -927.00 -4.17 -16.56 16 3 C 0.06 0.88 4.94 86.31 0.43 1.31 16 4 C -0.07 -0.87 5.27 29.85 0.16 -0.71 16 5 C -0.07 -0.73 5.13 -19.87 -0.10 -0.83 16 6 C -0.05 -0.27 9.70 22.27 0.22 -0.06 16 7 C -0.10 -0.45 10.05 22.27 0.22 -0.23 16 8 C -0.06 -0.62 9.56 22.27 0.21 -0.40 16 9 C -0.06 -1.02 6.85 36.37 0.25 -0.77 16 10 N 0.03 0.68 4.45 -46.46 -0.21 0.47 16 11 O -0.20 -5.05 18.45 18.89 0.35 -4.71 16 12 O -0.17 -4.04 18.45 18.88 0.35 -3.70 16 13 C -0.06 -0.85 9.21 22.27 0.21 -0.65 16 14 C 0.05 1.16 5.45 85.56 0.47 1.63 16 15 C 0.49 18.65 7.52 87.66 0.66 19.31 16 16 O -0.58 -27.83 14.33 -3.03 -0.04 -27.88 16 17 N -0.71 -28.82 5.55 -466.79 -2.59 -31.41 16 18 C 0.27 14.51 5.43 85.64 0.46 14.98 16 19 C -0.56 -29.76 9.28 25.60 0.24 -29.52 16 20 H 0.08 4.04 7.60 -2.91 -0.02 4.01 16 21 C 0.00 0.14 5.46 84.65 0.46 0.60 16 22 N -0.93 -55.75 13.29 21.44 0.28 -55.47 16 23 Si 0.98 41.74 29.54 68.60 2.03 43.77 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 27 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 1.77 5.82 -2.39 -0.01 1.75 16 29 H 0.08 1.73 6.47 -2.39 -0.02 1.72 16 30 H 0.04 0.56 8.12 -2.38 -0.02 0.54 16 31 H 0.10 1.03 7.93 -2.39 -0.02 1.01 16 32 H 0.10 1.11 8.08 -2.39 -0.02 1.09 16 33 H 0.08 1.00 6.50 -2.39 -0.02 0.98 16 34 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 35 H 0.18 -0.41 8.06 -2.91 -0.02 -0.43 16 36 H 0.16 1.23 7.61 -2.91 -0.02 1.21 16 37 H 0.15 2.11 7.61 -2.91 -0.02 2.09 16 38 H 0.08 1.63 8.12 -2.38 -0.02 1.61 16 39 H 0.13 2.32 7.93 -2.39 -0.02 2.31 16 40 H 0.41 13.35 8.32 -92.70 -0.77 12.58 16 41 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 42 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.88 371.66 1.29 -76.59 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.27 Total: 12.61 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.02 Total: 6.28 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -6.68 Total: -102.97 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: 0.65 Total: -36.28 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -77.88 1.29 -76.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801602005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.826 kcal (2) G-P(sol) polarization free energy of solvation -77.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds