Wall clock time and date at job start Tue Mar 31 2020 13:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.35811 * 126.05473 * 2 1 4 4 C 1.35750 * 107.56318 * 180.15863 * 3 2 1 5 5 N 1.40758 * 126.08300 * 179.84026 * 4 3 2 6 6 C 1.45752 * 117.94613 * 353.66865 * 5 4 3 7 7 C 1.52926 * 110.48981 * 199.07471 * 6 5 4 8 8 C 1.53343 * 108.66992 * 309.24552 * 7 6 5 9 9 C 1.53060 * 108.42565 * 67.53306 * 8 7 6 10 10 H 1.09001 * 109.40501 * 71.14296 * 9 8 7 11 11 O 1.45207 * 109.40022 * 190.96935 * 9 8 7 12 12 C 1.34234 * 116.99846 * 210.17198 * 11 9 8 13 13 O 1.20824 * 120.00007 * 359.97438 * 12 11 9 14 14 C 1.50694 * 119.99856 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47423 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47423 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99907 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99811 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00086 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46966 * 89.99749 * 20 18 16 22 22 H 1.48498 * 109.47163 * 209.99788 * 20 18 16 23 23 H 1.48495 * 109.46746 * 329.99799 * 20 18 16 24 24 C 1.33233 * 117.98795 * 173.59143 * 5 4 3 25 25 O 1.21313 * 118.15479 * 357.78969 * 24 5 4 26 26 C 1.40256 * 107.83712 * 359.58323 * 4 3 2 27 27 N 1.30829 * 108.33719 * 0.26049 * 26 4 3 28 28 H 1.08998 * 109.46476 * 270.28381 * 1 2 3 29 29 H 1.09000 * 109.46830 * 30.28128 * 1 2 3 30 30 H 1.08995 * 109.47188 * 150.28277 * 1 2 3 31 31 H 1.08000 * 126.21754 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.30250 * 78.76105 * 6 5 4 33 33 H 1.09006 * 109.30137 * 319.38222 * 6 5 4 34 34 H 1.08999 * 109.60428 * 189.49173 * 7 6 5 35 35 H 1.08999 * 109.59929 * 69.00140 * 7 6 5 36 36 H 1.09000 * 109.67294 * 307.79416 * 8 7 6 37 37 H 1.09005 * 109.67028 * 187.26365 * 8 7 6 38 38 H 1.09007 * 109.47252 * 59.99778 * 14 12 11 39 39 H 1.08999 * 109.47511 * 299.99789 * 14 12 11 40 40 H 1.09007 * 109.46604 * 300.00159 * 15 14 12 41 41 H 1.08999 * 109.47097 * 59.99485 * 15 14 12 42 42 H 0.97000 * 119.99433 * 180.02562 * 19 18 16 43 43 H 1.08000 * 125.83019 * 180.22927 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2644 1.0980 0.0000 4 6 3.5518 0.6674 -0.0036 5 7 4.6988 1.4833 -0.0080 6 6 4.5132 2.9219 -0.1509 7 6 5.8138 3.5872 -0.6031 8 6 6.9477 3.1271 0.3211 9 6 7.1915 1.6351 0.0819 10 1 7.6585 1.4963 -0.8933 11 8 8.0707 1.1182 1.1155 12 6 8.8716 0.0950 0.7787 13 8 8.8387 -0.3543 -0.3424 14 6 9.8116 -0.4935 1.7990 15 6 10.6035 -1.6376 1.1629 16 6 11.5431 -2.2265 2.1833 17 1 11.5728 -1.8247 3.1853 18 6 12.3649 -3.2783 1.8377 19 7 13.1852 -3.7919 2.7282 20 14 12.3140 -3.9729 0.1044 21 1 13.2943 -3.2518 -0.7468 22 1 12.6573 -5.4173 0.1397 23 1 10.9502 -3.8018 -0.4575 24 6 5.8864 0.8932 0.1202 25 8 5.9141 -0.3098 0.2747 26 6 3.5359 -0.7350 0.0039 27 7 2.2894 -1.1324 0.0060 28 1 -0.3632 0.0051 1.0277 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 1.9356 2.1267 0.0004 32 1 4.2075 3.3426 0.8070 33 1 3.7349 3.1131 -0.8898 34 1 5.7103 4.6706 -0.5435 35 1 6.0367 3.2945 -1.6291 36 1 6.6630 3.2904 1.3605 37 1 7.8549 3.6879 0.0961 38 1 9.2382 -0.8749 2.6440 39 1 10.5004 0.2769 2.1455 40 1 9.9144 -2.4080 0.8167 41 1 11.1768 -1.2567 0.3177 42 1 13.7636 -4.5316 2.4849 43 1 4.4042 -1.3772 0.0068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:31 Heat of formation + Delta-G solvation = -28.603823 kcal Electronic energy + Delta-G solvation = -27047.166191 eV Core-core repulsion = 23095.009721 eV Total energy + Delta-G solvation = -3952.156470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87663 -40.69304 -39.44799 -36.93726 -36.34916 -34.09822 -33.55252 -32.84699 -31.37105 -29.73562 -29.55075 -26.97896 -26.48383 -24.70467 -23.38839 -21.96746 -21.34303 -20.89272 -19.80175 -19.21891 -17.89163 -17.58535 -17.12679 -16.81153 -16.30945 -16.07615 -15.58341 -15.33215 -15.09379 -14.56306 -14.36165 -14.18029 -14.00339 -13.89825 -13.33160 -13.15342 -13.00165 -12.93623 -12.90410 -12.55186 -12.13352 -11.98868 -11.79471 -11.46173 -11.27331 -11.14782 -10.95015 -10.93070 -10.37863 -10.25008 -10.10258 -9.87477 -9.64954 -9.60844 -9.53629 -9.19886 -8.49984 -7.91240 -6.01902 -4.01299 1.48860 2.03715 2.19122 2.58377 2.78995 2.87499 3.16849 3.39381 3.46349 3.57751 4.05258 4.19433 4.28468 4.34133 4.38452 4.49647 4.52174 4.78241 4.79668 4.88371 4.97237 5.02794 5.06276 5.21402 5.29493 5.33171 5.41010 5.44840 5.47716 5.54154 5.74651 5.88681 6.05523 6.08383 6.50774 6.65617 6.77000 6.80078 7.07564 7.30305 7.39710 7.50118 7.76644 7.92995 8.24742 8.52555 9.00564 9.60230 11.10685 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002944 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.518759 B = 9508.976328 C =10655.224344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.379 5.379 3 C 0.017 3.983 4 C -0.001 4.001 5 N -0.518 5.518 6 C 0.108 3.892 7 C -0.133 4.133 8 C -0.121 4.121 9 C 0.081 3.919 10 H 0.117 0.883 11 O -0.341 6.341 12 C 0.461 3.539 13 O -0.497 6.497 14 C -0.092 4.092 15 C -0.002 4.002 16 C -0.525 4.525 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.876 3.124 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.260 1.260 24 C 0.502 3.498 25 O -0.511 6.511 26 C 0.059 3.941 27 N -0.287 5.287 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.027 0.973 41 H 0.021 0.979 42 H 0.264 0.736 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.667 20.629 -7.017 33.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.165 5.165 3 C -0.130 4.130 4 C -0.104 4.104 5 N -0.246 5.246 6 C -0.014 4.014 7 C -0.170 4.170 8 C -0.158 4.158 9 C 0.023 3.977 10 H 0.135 0.865 11 O -0.258 6.258 12 C 0.304 3.696 13 O -0.382 6.382 14 C -0.129 4.129 15 C -0.039 4.039 16 C -0.563 4.563 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.540 5.540 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.185 1.185 24 C 0.290 3.710 25 O -0.385 6.385 26 C -0.128 4.128 27 N -0.109 5.109 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.192 0.808 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -26.392 18.751 -7.262 33.179 hybrid contribution 0.445 0.423 -0.964 1.142 sum -25.947 19.174 -8.226 33.295 Atomic orbital electron populations 1.21800 0.73806 1.04379 1.03289 1.48299 1.06431 1.03498 1.58227 1.21835 0.89447 0.93494 1.08255 1.17859 0.86145 0.91250 1.15185 1.44363 1.03620 1.06681 1.69938 1.21596 0.99031 0.78541 1.02250 1.21892 0.93090 1.01712 1.00330 1.21786 1.00203 0.91976 1.01877 1.22305 0.87256 0.93202 0.94982 0.86529 1.86718 1.48671 1.48959 1.41456 1.24787 0.78495 0.76306 0.90012 1.90616 1.66292 1.58321 1.23016 1.21538 0.95356 0.99920 0.96134 1.19488 0.95227 0.92559 0.96673 1.21028 1.20189 1.16628 0.98460 0.90649 1.24949 0.94764 0.96154 0.97240 1.69908 1.24235 1.25540 1.34305 0.86813 0.79522 0.78133 0.85234 1.20201 1.21335 1.18452 1.20480 0.84923 0.88570 0.77045 1.90630 1.86411 1.14691 1.46757 1.24857 0.95404 0.93688 0.98829 1.77471 1.01433 1.08158 1.23856 0.90837 0.89635 0.89248 0.80771 0.90710 0.90007 0.88232 0.90249 0.89441 0.89095 0.88237 0.88348 0.95422 0.96071 0.92650 0.77206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 11.48 59.85 0.69 1.25 16 2 N -0.38 -3.87 4.04 -67.81 -0.27 -4.14 16 3 C 0.02 0.15 10.57 -16.68 -0.18 -0.02 16 4 C 0.00 -0.02 6.52 -83.89 -0.55 -0.56 16 5 N -0.52 -5.83 3.06 -114.89 -0.35 -6.18 16 6 C 0.11 0.64 5.76 -4.48 -0.03 0.62 16 7 C -0.13 -0.66 6.02 -26.59 -0.16 -0.82 16 8 C -0.12 -0.94 5.69 -26.52 -0.15 -1.09 16 9 C 0.08 1.08 2.70 -28.11 -0.08 1.00 16 10 H 0.12 1.60 7.15 -51.93 -0.37 1.23 16 11 O -0.34 -5.61 9.76 -45.01 -0.44 -6.05 16 12 C 0.46 9.14 7.41 36.00 0.27 9.41 16 13 O -0.50 -11.21 15.02 -18.89 -0.28 -11.49 16 14 C -0.09 -1.89 5.75 -27.89 -0.16 -2.05 16 15 C 0.00 -0.05 3.33 -27.89 -0.09 -0.14 16 16 C -0.53 -15.22 9.66 -34.44 -0.33 -15.55 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 20 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 24 C 0.50 7.42 7.19 -11.92 -0.09 7.34 16 25 O -0.51 -9.73 12.71 -10.97 -0.14 -9.87 16 26 C 0.06 0.90 10.66 -17.22 -0.18 0.71 16 27 N -0.29 -4.10 12.56 30.70 0.39 -3.71 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.18 0.80 7.54 -52.49 -0.40 0.40 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.32 7.45 -51.93 -0.39 -0.07 16 34 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 39 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.03 0.74 7.16 -51.92 -0.37 0.37 16 41 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.21 3.62 5.74 -52.49 -0.30 3.32 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -39.06 357.80 -6.77 -45.83 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.03 Total: -2.62 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.13 Total: 2.09 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.53 Total: -41.44 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.86 Total: -27.42 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.06 -6.77 -45.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.230 kcal (2) G-P(sol) polarization free energy of solvation -39.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds