Wall clock time and date at job start Tue Mar 31 2020 13:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.35811 * 126.05473 * 2 1 4 4 C 1.35750 * 107.56318 * 180.15863 * 3 2 1 5 5 N 1.40758 * 126.08300 * 179.84026 * 4 3 2 6 6 C 1.45752 * 117.94613 * 353.66865 * 5 4 3 7 7 C 1.52926 * 110.48981 * 199.07471 * 6 5 4 8 8 C 1.53343 * 108.66992 * 309.24552 * 7 6 5 9 9 C 1.53060 * 108.42565 * 67.53306 * 8 7 6 10 10 H 1.09001 * 109.40501 * 71.14296 * 9 8 7 11 11 O 1.45207 * 109.40022 * 190.96935 * 9 8 7 12 12 C 1.34234 * 116.99846 * 210.17198 * 11 9 8 13 13 O 1.20824 * 120.00007 * 359.97438 * 12 11 9 14 14 C 1.50694 * 119.99856 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47423 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47423 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99907 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99811 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00086 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46966 * 89.99749 * 20 18 16 22 22 H 1.48498 * 109.47163 * 209.99788 * 20 18 16 23 23 H 1.48495 * 109.46746 * 329.99799 * 20 18 16 24 24 C 1.33233 * 117.98795 * 173.59143 * 5 4 3 25 25 O 1.21313 * 118.15479 * 357.78969 * 24 5 4 26 26 C 1.40256 * 107.83712 * 359.58323 * 4 3 2 27 27 N 1.30829 * 108.33719 * 0.26049 * 26 4 3 28 28 H 1.08998 * 109.46476 * 270.28381 * 1 2 3 29 29 H 1.09000 * 109.46830 * 30.28128 * 1 2 3 30 30 H 1.08995 * 109.47188 * 150.28277 * 1 2 3 31 31 H 1.08000 * 126.21754 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.30250 * 78.76105 * 6 5 4 33 33 H 1.09006 * 109.30137 * 319.38222 * 6 5 4 34 34 H 1.08999 * 109.60428 * 189.49173 * 7 6 5 35 35 H 1.08999 * 109.59929 * 69.00140 * 7 6 5 36 36 H 1.09000 * 109.67294 * 307.79416 * 8 7 6 37 37 H 1.09005 * 109.67028 * 187.26365 * 8 7 6 38 38 H 1.09007 * 109.47252 * 59.99778 * 14 12 11 39 39 H 1.08999 * 109.47511 * 299.99789 * 14 12 11 40 40 H 1.09007 * 109.46604 * 300.00159 * 15 14 12 41 41 H 1.08999 * 109.47097 * 59.99485 * 15 14 12 42 42 H 0.97000 * 119.99433 * 180.02562 * 19 18 16 43 43 H 1.08000 * 125.83019 * 180.22927 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2644 1.0980 0.0000 4 6 3.5518 0.6674 -0.0036 5 7 4.6988 1.4833 -0.0080 6 6 4.5132 2.9219 -0.1509 7 6 5.8138 3.5872 -0.6031 8 6 6.9477 3.1271 0.3211 9 6 7.1915 1.6351 0.0819 10 1 7.6585 1.4963 -0.8933 11 8 8.0707 1.1182 1.1155 12 6 8.8716 0.0950 0.7787 13 8 8.8387 -0.3543 -0.3424 14 6 9.8116 -0.4935 1.7990 15 6 10.6035 -1.6376 1.1629 16 6 11.5431 -2.2265 2.1833 17 1 11.5728 -1.8247 3.1853 18 6 12.3649 -3.2783 1.8377 19 7 13.1852 -3.7919 2.7282 20 14 12.3140 -3.9729 0.1044 21 1 13.2943 -3.2518 -0.7468 22 1 12.6573 -5.4173 0.1397 23 1 10.9502 -3.8018 -0.4575 24 6 5.8864 0.8932 0.1202 25 8 5.9141 -0.3098 0.2747 26 6 3.5359 -0.7350 0.0039 27 7 2.2894 -1.1324 0.0060 28 1 -0.3632 0.0051 1.0277 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 1.9356 2.1267 0.0004 32 1 4.2075 3.3426 0.8070 33 1 3.7349 3.1131 -0.8898 34 1 5.7103 4.6706 -0.5435 35 1 6.0367 3.2945 -1.6291 36 1 6.6630 3.2904 1.3605 37 1 7.8549 3.6879 0.0961 38 1 9.2382 -0.8749 2.6440 39 1 10.5004 0.2769 2.1455 40 1 9.9144 -2.4080 0.8167 41 1 11.1768 -1.2567 0.3177 42 1 13.7636 -4.5316 2.4849 43 1 4.4042 -1.3772 0.0068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:31 Heat of formation + Delta-G solvation = -55.923826 kcal Electronic energy + Delta-G solvation = -27048.350875 eV Core-core repulsion = 23095.009721 eV Total energy + Delta-G solvation = -3953.341154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78615 -41.85076 -40.66805 -37.90649 -37.65559 -35.66030 -34.90844 -33.65838 -33.40007 -30.57807 -30.38628 -28.39574 -27.60485 -25.57450 -24.32625 -23.61222 -22.17732 -21.82946 -21.42587 -20.02430 -19.43341 -18.73916 -18.44934 -18.14743 -17.36911 -17.09236 -16.80625 -16.44860 -16.29895 -15.95579 -15.43232 -15.15464 -15.09325 -14.87086 -14.66942 -14.52947 -14.31314 -13.93241 -13.58100 -13.49202 -13.45992 -13.08619 -12.91551 -12.78941 -12.47942 -12.33687 -12.27448 -12.05143 -11.96843 -11.83560 -11.78949 -11.49048 -11.38268 -11.10559 -10.80681 -10.64072 -10.42645 -8.75421 -8.34093 -6.37842 0.65591 1.01511 1.18286 1.30912 1.33759 1.42104 1.48880 1.63753 1.95231 2.07939 2.32754 3.00973 3.23888 3.54128 3.59755 3.71947 3.78293 3.89283 3.94339 4.12750 4.25100 4.30813 4.35332 4.44824 4.46605 4.56214 4.61193 4.68455 4.71364 4.73810 4.82798 4.97593 5.01400 5.07724 5.17726 5.24206 5.32962 5.36641 5.56020 5.72216 6.06051 6.19294 6.22833 6.58500 6.65495 6.74985 6.97096 7.27091 8.81438 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002944 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.518759 B = 9508.976328 C =10655.224344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.373 5.373 3 C 0.055 3.945 4 C -0.036 4.036 5 N -0.506 5.506 6 C 0.093 3.907 7 C -0.124 4.124 8 C -0.113 4.113 9 C 0.074 3.926 10 H 0.106 0.894 11 O -0.336 6.336 12 C 0.469 3.531 13 O -0.531 6.531 14 C -0.089 4.089 15 C 0.004 3.996 16 C -0.531 4.531 17 H 0.053 0.947 18 C 0.017 3.983 19 N -0.940 5.940 20 Si 0.937 3.063 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.266 1.266 24 C 0.487 3.513 25 O -0.571 6.571 26 C 0.026 3.974 27 N -0.327 5.327 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.234 0.766 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.008 0.992 41 H 0.020 0.980 42 H 0.269 0.731 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.516 24.779 -8.080 38.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 C -0.094 4.094 4 C -0.139 4.139 5 N -0.232 5.232 6 C -0.027 4.027 7 C -0.161 4.161 8 C -0.151 4.151 9 C 0.016 3.984 10 H 0.124 0.876 11 O -0.253 6.253 12 C 0.314 3.686 13 O -0.420 6.420 14 C -0.126 4.126 15 C -0.034 4.034 16 C -0.569 4.569 17 H 0.072 0.928 18 C -0.182 4.182 19 N -0.580 5.580 20 Si 0.761 3.239 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.191 1.191 24 C 0.275 3.725 25 O -0.451 6.451 26 C -0.159 4.159 27 N -0.151 5.151 28 H 0.106 0.894 29 H 0.146 0.854 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -29.290 22.963 -8.318 38.136 hybrid contribution 1.105 -0.769 -0.580 1.466 sum -28.185 22.194 -8.898 36.961 Atomic orbital electron populations 1.22282 0.70799 1.06373 1.04882 1.48828 1.08068 1.02845 1.55979 1.22631 0.87589 0.95239 1.03893 1.18081 0.87893 0.90258 1.17659 1.44475 1.02124 1.08702 1.67885 1.22150 1.00653 0.75105 1.04751 1.21977 0.91059 1.03975 0.99116 1.21930 1.02431 0.87483 1.03247 1.22821 0.85723 0.96319 0.93558 0.87617 1.86644 1.48501 1.47428 1.42684 1.24394 0.78578 0.76694 0.88983 1.90599 1.67491 1.59573 1.24295 1.21334 0.95923 0.99265 0.96101 1.19304 0.94600 0.93631 0.95863 1.21310 1.20593 1.16617 0.98349 0.92833 1.25766 0.94571 0.96698 1.01122 1.70014 1.25276 1.26422 1.36300 0.85852 0.79364 0.78023 0.80654 1.18620 1.20244 1.19093 1.20832 0.86490 0.88055 0.77097 1.90633 1.87389 1.17145 1.49893 1.24470 0.94976 0.95490 1.01013 1.77372 1.01675 1.10520 1.25567 0.89404 0.85417 0.89543 0.75013 0.88157 0.86833 0.83875 0.90579 0.88733 0.87477 0.87718 0.85917 0.97379 0.96166 0.92217 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.48 127.77 1.47 2.12 16 2 N -0.37 -6.74 4.04 -368.46 -1.49 -8.22 16 3 C 0.06 0.79 10.57 83.50 0.88 1.67 16 4 C -0.04 -0.86 6.52 37.62 0.25 -0.61 16 5 N -0.51 -10.66 3.06 -636.63 -1.95 -12.61 16 6 C 0.09 0.67 5.76 86.50 0.50 1.17 16 7 C -0.12 -0.67 6.02 30.68 0.18 -0.48 16 8 C -0.11 -1.44 5.69 30.73 0.17 -1.27 16 9 C 0.07 1.95 2.70 29.70 0.08 2.03 16 10 H 0.11 2.99 7.15 -2.39 -0.02 2.97 16 11 O -0.34 -11.21 9.76 -45.97 -0.45 -11.66 16 12 C 0.47 19.17 7.41 71.23 0.53 19.70 16 13 O -0.53 -25.00 15.02 22.11 0.33 -24.67 16 14 C -0.09 -3.74 5.75 29.85 0.17 -3.57 16 15 C 0.00 0.19 3.33 29.85 0.10 0.29 16 16 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 17 H 0.05 3.34 7.99 -2.91 -0.02 3.32 16 18 C 0.02 1.01 5.47 84.65 0.46 1.47 16 19 N -0.94 -59.91 13.96 21.45 0.30 -59.61 16 20 Si 0.94 47.96 27.47 68.60 1.88 49.85 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -13.82 6.54 99.48 0.65 -13.17 16 24 C 0.49 14.81 7.19 87.73 0.63 15.45 16 25 O -0.57 -23.74 12.71 12.65 0.16 -23.58 16 26 C 0.03 0.84 10.66 85.33 0.91 1.75 16 27 N -0.33 -9.67 12.56 -56.77 -0.71 -10.39 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.23 0.41 7.54 -2.91 -0.02 0.39 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.11 0.17 7.45 -2.38 -0.02 0.15 16 34 H 0.14 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 36 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 37 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.10 4.27 8.14 -2.38 -0.02 4.25 16 39 H 0.12 4.51 8.14 -2.39 -0.02 4.49 16 40 H 0.01 0.44 7.16 -2.38 -0.02 0.42 16 41 H 0.02 1.04 7.53 -2.39 -0.02 1.03 16 42 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 43 H 0.17 6.89 5.74 -2.91 -0.02 6.87 16 Total: -1.00 -93.70 357.80 5.63 -88.08 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.97 Total: 4.44 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.58 Total: 8.37 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -3.85 Total: -90.83 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: 0.04 Total: -59.90 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.88 Total: 49.85 kcal Total: -93.70 5.63 -88.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.151 kcal (2) G-P(sol) polarization free energy of solvation -93.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds