Wall clock time and date at job start Tue Mar 31 2020 13:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35814 * 126.05152 * 2 1 4 4 C 1.35753 * 107.55702 * 180.15631 * 3 2 1 5 5 N 1.40766 * 126.07784 * 179.83945 * 4 3 2 6 6 C 1.45755 * 117.94744 * 353.87400 * 5 4 3 7 7 C 1.52914 * 110.48717 * 160.92748 * 6 5 4 8 8 C 1.53338 * 108.67782 * 50.75033 * 7 6 5 9 9 C 1.53067 * 108.42798 * 292.46955 * 8 7 6 10 10 H 1.09005 * 109.40083 * 288.85699 * 9 8 7 11 11 O 1.45197 * 109.40036 * 169.02847 * 9 8 7 12 12 C 1.34239 * 116.99689 * 150.00112 * 11 9 8 13 13 O 1.20826 * 119.99826 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99758 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47063 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47244 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99719 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99752 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00098 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99570 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46851 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47532 * 300.00317 * 20 18 16 23 23 H 1.48497 * 109.47300 * 60.00253 * 20 18 16 24 24 C 1.33358 * 117.94819 * 173.87283 * 5 4 3 25 25 O 1.21302 * 118.24299 * 2.22234 * 24 5 4 26 26 C 1.40255 * 107.84205 * 359.58282 * 4 3 2 27 27 N 1.30825 * 108.33447 * 0.25950 * 26 4 3 28 28 H 1.09007 * 109.46883 * 270.33446 * 1 2 3 29 29 H 1.08997 * 109.47284 * 30.33329 * 1 2 3 30 30 H 1.09001 * 109.47455 * 150.33245 * 1 2 3 31 31 H 1.07997 * 126.21872 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.30200 * 40.60819 * 6 5 4 33 33 H 1.09001 * 109.12928 * 281.13319 * 6 5 4 34 34 H 1.09006 * 109.60387 * 290.99267 * 7 6 5 35 35 H 1.09009 * 109.73791 * 170.59028 * 7 6 5 36 36 H 1.09001 * 109.67248 * 172.73516 * 8 7 6 37 37 H 1.08999 * 109.70193 * 52.22417 * 8 7 6 38 38 H 1.08999 * 109.47322 * 60.00410 * 14 12 11 39 39 H 1.09001 * 109.47567 * 300.00160 * 14 12 11 40 40 H 1.09007 * 109.46849 * 60.00723 * 15 14 12 41 41 H 1.09001 * 109.47195 * 300.00554 * 15 14 12 42 42 H 0.96999 * 120.00175 * 179.97438 * 19 18 16 43 43 H 1.08003 * 125.83491 * 180.28289 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0980 0.0000 4 6 3.5517 0.6674 -0.0035 5 7 4.6988 1.4834 -0.0079 6 6 4.5128 2.9224 -0.1463 7 6 5.7574 3.6713 0.3317 8 6 6.9882 3.0664 -0.3543 9 6 7.1860 1.6434 0.1738 10 1 7.5320 1.6852 1.2066 11 8 8.1762 0.9604 -0.6394 12 6 8.9179 0.0195 -0.0340 13 8 8.7450 -0.2256 1.1364 14 6 9.9654 -0.7319 -0.8145 15 6 10.6618 -1.7380 0.1039 16 6 11.7089 -2.4899 -0.6768 17 1 11.8626 -2.2716 -1.7232 18 6 12.4713 -3.4557 -0.0547 19 7 12.2845 -3.7211 1.2197 20 14 13.7697 -4.3871 -1.0222 21 1 14.4455 -5.3638 -0.1307 22 1 13.1248 -5.1092 -2.1483 23 1 14.7705 -3.4293 -1.5569 24 6 5.8874 0.8914 0.1147 25 8 5.9215 -0.3193 0.1823 26 6 3.5358 -0.7350 0.0040 27 7 2.2894 -1.1324 0.0061 28 1 -0.3633 0.0060 1.0277 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3634 -0.8929 -0.5087 31 1 1.9354 2.1267 0.0004 32 1 3.6543 3.2336 0.4488 33 1 4.3298 3.1598 -1.1943 34 1 5.8536 3.5682 1.4126 35 1 5.6750 4.7265 0.0709 36 1 7.8681 3.6680 -0.1263 37 1 6.8316 3.0392 -1.4326 38 1 10.7005 -0.0289 -1.2063 39 1 9.4922 -1.2613 -1.6416 40 1 9.9269 -2.4412 0.4960 41 1 11.1350 -1.2083 0.9307 42 1 12.8206 -4.4009 1.6573 43 1 4.4041 -1.3772 0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:34 Heat of formation + Delta-G solvation = -31.204173 kcal Electronic energy + Delta-G solvation = -26967.255161 eV Core-core repulsion = 23014.985932 eV Total energy + Delta-G solvation = -3952.269230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81517 -40.60641 -39.33148 -36.87873 -36.21753 -34.03194 -33.50776 -32.79659 -31.09789 -29.66473 -29.46172 -26.92096 -26.07612 -24.63480 -23.33253 -22.19012 -21.30447 -20.86923 -19.79960 -19.16791 -17.81891 -17.41087 -17.05818 -16.54928 -16.19529 -15.91256 -15.47639 -15.20752 -15.03774 -14.53036 -14.42289 -14.18847 -14.10895 -13.81430 -13.23258 -13.05901 -12.95535 -12.88313 -12.70245 -12.25139 -11.98987 -11.93257 -11.74310 -11.28904 -11.11199 -11.01893 -10.87901 -10.86177 -10.61134 -10.34363 -9.97483 -9.85105 -9.55161 -9.50038 -9.46012 -9.12421 -8.31171 -7.85708 -5.95004 -3.99783 1.53498 2.10762 2.24130 2.67221 2.86526 2.99324 3.24289 3.37475 3.41854 3.44245 4.11326 4.24666 4.34994 4.38268 4.41578 4.50216 4.55287 4.81897 4.86322 4.94812 5.02355 5.07543 5.11717 5.27112 5.34473 5.40123 5.46015 5.52391 5.55907 5.60677 5.82836 5.94258 6.19203 6.26318 6.66599 6.70926 6.82501 6.97506 7.13424 7.55160 7.73108 7.82190 8.00070 8.05290 8.31603 8.47238 9.07111 9.63681 11.16032 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002732 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.236574 B =10247.757617 C =11444.354805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.380 5.380 3 C 0.015 3.985 4 C 0.000 4.000 5 N -0.519 5.519 6 C 0.110 3.890 7 C -0.133 4.133 8 C -0.120 4.120 9 C 0.081 3.919 10 H 0.117 0.883 11 O -0.344 6.344 12 C 0.459 3.541 13 O -0.491 6.491 14 C -0.100 4.100 15 C 0.034 3.966 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.502 3.498 25 O -0.509 6.509 26 C 0.059 3.941 27 N -0.288 5.288 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.027 0.973 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.287 20.180 -3.806 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.165 5.165 3 C -0.132 4.132 4 C -0.104 4.104 5 N -0.248 5.248 6 C -0.013 4.013 7 C -0.171 4.171 8 C -0.158 4.158 9 C 0.022 3.978 10 H 0.134 0.866 11 O -0.261 6.261 12 C 0.302 3.698 13 O -0.375 6.375 14 C -0.137 4.137 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.202 1.202 24 C 0.290 3.710 25 O -0.383 6.383 26 C -0.128 4.128 27 N -0.110 5.110 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.192 0.808 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -24.120 18.385 -3.234 30.500 hybrid contribution 1.037 0.339 -0.279 1.126 sum -23.083 18.724 -3.513 29.930 Atomic orbital electron populations 1.21792 0.73864 1.04379 1.03220 1.48292 1.06403 1.03512 1.58287 1.21827 0.89471 0.93464 1.08435 1.17876 0.86159 0.91289 1.15036 1.44414 1.03653 1.06606 1.70093 1.21581 0.99268 0.78298 1.02135 1.21888 0.92908 1.00520 1.01747 1.21775 0.99375 0.92463 1.02171 1.22282 0.85334 0.91183 0.98966 0.86578 1.86723 1.45544 1.50407 1.43466 1.24825 0.80442 0.76802 0.87732 1.90634 1.66457 1.62636 1.17819 1.21761 0.93386 0.98293 1.00270 1.19020 0.94977 0.92438 0.93923 1.21118 1.18802 1.20206 0.96493 0.92372 1.25019 0.97422 0.96985 0.94912 1.69985 1.40319 1.32529 1.09933 0.86604 0.81643 0.79638 0.79773 1.21288 1.20167 1.20193 1.20535 0.84846 0.88779 0.76837 1.90619 1.86155 1.14249 1.47255 1.24924 0.95417 0.93717 0.98769 1.77469 1.01463 1.08151 1.23869 0.90903 0.89659 0.89249 0.80800 0.90116 0.90712 0.90258 0.88284 0.89144 0.89510 0.89003 0.88891 0.95413 0.95621 0.92821 0.77060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 11.48 59.85 0.69 1.28 16 2 N -0.38 -4.01 4.04 -67.81 -0.27 -4.28 16 3 C 0.02 0.14 10.61 -16.68 -0.18 -0.03 16 4 C 0.00 -0.01 6.54 -83.88 -0.55 -0.55 16 5 N -0.52 -6.12 3.07 -114.86 -0.35 -6.47 16 6 C 0.11 0.70 5.96 -4.49 -0.03 0.68 16 7 C -0.13 -0.72 6.02 -26.60 -0.16 -0.88 16 8 C -0.12 -1.01 5.69 -26.52 -0.15 -1.16 16 9 C 0.08 1.13 2.69 -28.10 -0.08 1.06 16 10 H 0.12 1.70 7.16 -51.93 -0.37 1.33 16 11 O -0.34 -5.93 9.77 -45.02 -0.44 -6.37 16 12 C 0.46 9.63 7.40 36.00 0.27 9.90 16 13 O -0.49 -11.84 15.00 -18.99 -0.28 -12.12 16 14 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 15 C 0.03 0.92 4.26 -27.88 -0.12 0.80 16 16 C -0.53 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 20 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.50 7.76 7.20 -11.87 -0.09 7.67 16 25 O -0.51 -10.08 12.66 -11.16 -0.14 -10.22 16 26 C 0.06 0.92 10.68 -17.22 -0.18 0.74 16 27 N -0.29 -4.23 12.56 30.70 0.39 -3.84 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.17 0.86 7.24 -52.49 -0.38 0.48 16 32 H 0.08 0.34 7.00 -51.93 -0.36 -0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.03 0.84 8.10 -51.93 -0.42 0.41 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.21 3.78 5.69 -52.48 -0.30 3.48 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -39.07 360.80 -7.12 -46.19 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.02 Total: -1.61 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.14 Total: 3.32 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.50 Total: -41.57 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.87 Total: -28.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.07 -7.12 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.989 kcal (2) G-P(sol) polarization free energy of solvation -39.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds