Wall clock time and date at job start Tue Mar 31 2020 13:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35814 * 126.05152 * 2 1 4 4 C 1.35753 * 107.55702 * 180.15631 * 3 2 1 5 5 N 1.40766 * 126.07784 * 179.83945 * 4 3 2 6 6 C 1.45755 * 117.94744 * 353.87400 * 5 4 3 7 7 C 1.52914 * 110.48717 * 160.92748 * 6 5 4 8 8 C 1.53338 * 108.67782 * 50.75033 * 7 6 5 9 9 C 1.53067 * 108.42798 * 292.46955 * 8 7 6 10 10 H 1.09005 * 109.40083 * 288.85699 * 9 8 7 11 11 O 1.45197 * 109.40036 * 169.02847 * 9 8 7 12 12 C 1.34239 * 116.99689 * 150.00112 * 11 9 8 13 13 O 1.20826 * 119.99826 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99758 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47063 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47244 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99719 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99752 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00098 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99570 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46851 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47532 * 300.00317 * 20 18 16 23 23 H 1.48497 * 109.47300 * 60.00253 * 20 18 16 24 24 C 1.33358 * 117.94819 * 173.87283 * 5 4 3 25 25 O 1.21302 * 118.24299 * 2.22234 * 24 5 4 26 26 C 1.40255 * 107.84205 * 359.58282 * 4 3 2 27 27 N 1.30825 * 108.33447 * 0.25950 * 26 4 3 28 28 H 1.09007 * 109.46883 * 270.33446 * 1 2 3 29 29 H 1.08997 * 109.47284 * 30.33329 * 1 2 3 30 30 H 1.09001 * 109.47455 * 150.33245 * 1 2 3 31 31 H 1.07997 * 126.21872 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.30200 * 40.60819 * 6 5 4 33 33 H 1.09001 * 109.12928 * 281.13319 * 6 5 4 34 34 H 1.09006 * 109.60387 * 290.99267 * 7 6 5 35 35 H 1.09009 * 109.73791 * 170.59028 * 7 6 5 36 36 H 1.09001 * 109.67248 * 172.73516 * 8 7 6 37 37 H 1.08999 * 109.70193 * 52.22417 * 8 7 6 38 38 H 1.08999 * 109.47322 * 60.00410 * 14 12 11 39 39 H 1.09001 * 109.47567 * 300.00160 * 14 12 11 40 40 H 1.09007 * 109.46849 * 60.00723 * 15 14 12 41 41 H 1.09001 * 109.47195 * 300.00554 * 15 14 12 42 42 H 0.96999 * 120.00175 * 179.97438 * 19 18 16 43 43 H 1.08003 * 125.83491 * 180.28289 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0980 0.0000 4 6 3.5517 0.6674 -0.0035 5 7 4.6988 1.4834 -0.0079 6 6 4.5128 2.9224 -0.1463 7 6 5.7574 3.6713 0.3317 8 6 6.9882 3.0664 -0.3543 9 6 7.1860 1.6434 0.1738 10 1 7.5320 1.6852 1.2066 11 8 8.1762 0.9604 -0.6394 12 6 8.9179 0.0195 -0.0340 13 8 8.7450 -0.2256 1.1364 14 6 9.9654 -0.7319 -0.8145 15 6 10.6618 -1.7380 0.1039 16 6 11.7089 -2.4899 -0.6768 17 1 11.8626 -2.2716 -1.7232 18 6 12.4713 -3.4557 -0.0547 19 7 12.2845 -3.7211 1.2197 20 14 13.7697 -4.3871 -1.0222 21 1 14.4455 -5.3638 -0.1307 22 1 13.1248 -5.1092 -2.1483 23 1 14.7705 -3.4293 -1.5569 24 6 5.8874 0.8914 0.1147 25 8 5.9215 -0.3193 0.1823 26 6 3.5358 -0.7350 0.0040 27 7 2.2894 -1.1324 0.0061 28 1 -0.3633 0.0060 1.0277 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3634 -0.8929 -0.5087 31 1 1.9354 2.1267 0.0004 32 1 3.6543 3.2336 0.4488 33 1 4.3298 3.1598 -1.1943 34 1 5.8536 3.5682 1.4126 35 1 5.6750 4.7265 0.0709 36 1 7.8681 3.6680 -0.1263 37 1 6.8316 3.0392 -1.4326 38 1 10.7005 -0.0289 -1.2063 39 1 9.4922 -1.2613 -1.6416 40 1 9.9269 -2.4412 0.4960 41 1 11.1350 -1.2083 0.9307 42 1 12.8206 -4.4009 1.6573 43 1 4.4041 -1.3772 0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:34 Heat of formation + Delta-G solvation = -58.662348 kcal Electronic energy + Delta-G solvation = -26968.445837 eV Core-core repulsion = 23014.985932 eV Total energy + Delta-G solvation = -3953.459905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.78030 -41.83578 -40.64995 -37.90058 -37.63952 -35.66850 -34.90433 -33.63544 -33.12957 -30.55751 -30.35792 -28.06593 -27.59789 -25.61568 -24.42560 -23.84286 -22.20029 -21.85368 -21.43070 -20.02792 -19.21709 -18.64459 -18.27844 -18.14226 -17.35621 -17.03123 -16.81224 -16.51404 -16.39281 -15.96164 -15.40323 -15.16994 -15.07819 -14.66386 -14.50893 -14.36641 -14.25153 -13.93184 -13.57498 -13.47887 -13.31347 -13.03016 -12.80089 -12.78958 -12.54579 -12.46446 -12.34426 -12.01804 -11.97902 -11.76632 -11.75526 -11.45302 -11.28178 -11.12227 -10.63555 -10.58077 -10.42250 -8.75028 -8.20643 -6.35381 0.65209 1.03137 1.20728 1.41455 1.43054 1.47149 1.54580 1.66257 1.93601 2.08301 2.42757 3.12525 3.24023 3.54682 3.60875 3.72325 3.79835 3.88067 3.95642 4.15702 4.25408 4.40477 4.41905 4.45810 4.47248 4.56382 4.60885 4.68461 4.72731 4.74854 4.87587 4.97995 5.00906 5.07864 5.20661 5.37208 5.44472 5.52258 5.72874 5.78569 6.06261 6.11067 6.22919 6.58685 6.74702 6.83553 6.97580 7.34725 8.92201 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002732 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.236574 B =10247.757617 C =11444.354805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.372 5.372 3 C 0.056 3.944 4 C -0.036 4.036 5 N -0.506 5.506 6 C 0.094 3.906 7 C -0.124 4.124 8 C -0.112 4.112 9 C 0.073 3.927 10 H 0.101 0.899 11 O -0.336 6.336 12 C 0.466 3.534 13 O -0.534 6.534 14 C -0.092 4.092 15 C 0.041 3.959 16 C -0.546 4.546 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.978 3.022 21 H -0.286 1.286 22 H -0.265 1.265 23 H -0.258 1.258 24 C 0.487 3.513 25 O -0.571 6.571 26 C 0.024 3.976 27 N -0.327 5.327 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.107 0.893 40 H -0.019 1.019 41 H -0.007 1.007 42 H 0.264 0.736 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.173 24.167 -5.998 35.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 C -0.093 4.093 4 C -0.139 4.139 5 N -0.233 5.233 6 C -0.025 4.025 7 C -0.162 4.162 8 C -0.150 4.150 9 C 0.015 3.985 10 H 0.119 0.881 11 O -0.252 6.252 12 C 0.310 3.690 13 O -0.422 6.422 14 C -0.129 4.129 15 C 0.004 3.996 16 C -0.583 4.583 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.801 3.199 21 H -0.212 1.212 22 H -0.189 1.189 23 H -0.182 1.182 24 C 0.275 3.725 25 O -0.451 6.451 26 C -0.161 4.161 27 N -0.151 5.151 28 H 0.106 0.894 29 H 0.146 0.854 30 H 0.105 0.895 31 H 0.251 0.749 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.125 0.875 40 H -0.001 1.001 41 H 0.012 0.988 42 H 0.073 0.927 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -26.066 22.443 -5.466 34.828 hybrid contribution 1.358 -0.805 0.441 1.639 sum -24.709 21.638 -5.025 33.226 Atomic orbital electron populations 1.22287 0.70764 1.06409 1.04886 1.48834 1.08078 1.02828 1.55922 1.22636 0.87526 0.95260 1.03914 1.18102 0.87931 0.90267 1.17648 1.44515 1.02098 1.08714 1.67925 1.22153 1.01111 0.74751 1.04519 1.21980 0.90581 1.02439 1.01166 1.21926 1.01910 0.88329 1.02806 1.22814 0.83639 0.93716 0.98343 0.88098 1.86641 1.45803 1.49282 1.43513 1.24558 0.80469 0.77070 0.86878 1.90617 1.67820 1.64131 1.19646 1.21515 0.94309 0.97985 0.99083 1.18774 0.94104 0.92667 0.94102 1.21609 1.18830 1.20379 0.97505 0.90298 1.26168 1.00167 0.98125 0.95956 1.70171 1.41823 1.33444 1.12246 0.85309 0.78356 0.78125 0.78074 1.21200 1.18924 1.18236 1.20866 0.86461 0.88238 0.76918 1.90627 1.87172 1.16822 1.50439 1.24510 0.94991 0.95553 1.01057 1.77370 1.01658 1.10532 1.25576 0.89387 0.85370 0.89534 0.74895 0.86622 0.88261 0.90655 0.83730 0.87523 0.88606 0.85771 0.87493 1.00070 0.98848 0.92717 0.80996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.48 127.77 1.47 2.18 16 2 N -0.37 -7.06 4.04 -368.46 -1.49 -8.55 16 3 C 0.06 0.85 10.61 83.50 0.89 1.73 16 4 C -0.04 -0.92 6.54 37.62 0.25 -0.67 16 5 N -0.51 -11.43 3.07 -636.49 -1.95 -13.38 16 6 C 0.09 0.79 5.96 86.49 0.52 1.30 16 7 C -0.12 -0.82 6.02 30.68 0.18 -0.63 16 8 C -0.11 -1.60 5.69 30.73 0.17 -1.42 16 9 C 0.07 2.10 2.69 29.70 0.08 2.18 16 10 H 0.10 3.17 7.16 -2.38 -0.02 3.16 16 11 O -0.34 -11.98 9.77 -46.01 -0.45 -12.43 16 12 C 0.47 20.74 7.40 71.23 0.53 21.26 16 13 O -0.53 -28.04 15.00 22.20 0.33 -27.71 16 14 C -0.09 -4.10 5.75 29.85 0.17 -3.92 16 15 C 0.04 2.38 4.26 29.85 0.13 2.51 16 16 C -0.55 -32.13 9.11 25.60 0.23 -31.89 16 17 H 0.08 4.22 7.74 -2.91 -0.02 4.19 16 18 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 19 N -0.94 -60.94 13.29 21.45 0.28 -60.66 16 20 Si 0.98 45.50 29.54 68.60 2.03 47.53 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 C 0.49 15.84 7.20 87.71 0.63 16.47 16 25 O -0.57 -25.19 12.66 12.87 0.16 -25.03 16 26 C 0.02 0.82 10.68 85.33 0.91 1.73 16 27 N -0.33 -10.06 12.56 -56.77 -0.71 -10.78 16 28 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.23 0.57 7.24 -2.91 -0.02 0.54 16 32 H 0.12 0.22 7.00 -2.39 -0.02 0.20 16 33 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.61 8.12 -2.38 -0.02 0.60 16 35 H 0.14 -0.22 8.14 -2.38 -0.02 -0.23 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.23 8.13 -2.39 -0.02 1.21 16 38 H 0.12 4.71 8.14 -2.39 -0.02 4.69 16 39 H 0.11 4.47 8.14 -2.39 -0.02 4.45 16 40 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 41 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 42 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 43 H 0.17 7.22 5.69 -2.91 -0.02 7.20 16 Total: -1.00 -97.70 360.80 5.85 -91.85 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.02 Total: 8.26 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 6.62 Total: 10.90 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -3.87 Total: -93.36 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: 0.05 Total: -65.16 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -97.70 5.85 -91.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.188 kcal (2) G-P(sol) polarization free energy of solvation -97.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds