Wall clock time and date at job start Tue Mar 31 2020 13:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00040 * 2 1 4 4 O 1.21581 * 120.00272 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.39437 * 119.99991 * 185.20868 * 5 3 2 7 7 C 1.39152 * 119.92133 * 34.72492 * 6 5 3 8 8 C 1.37637 * 120.07988 * 180.27347 * 7 6 5 9 9 C 1.39821 * 119.92332 * 359.45308 * 8 7 6 10 10 C 1.47472 * 120.08294 * 180.29621 * 9 8 7 11 11 O 1.21622 * 119.99818 * 331.29784 * 10 9 8 12 12 N 1.34774 * 119.99995 * 151.29879 * 10 9 8 13 13 C 1.36901 * 120.00066 * 186.87272 * 12 10 9 14 14 H 1.07996 * 119.99641 * 216.84373 * 13 12 10 15 15 C 1.39022 * 120.00089 * 36.84256 * 13 12 10 16 16 N 1.31382 * 119.99870 * 25.84128 * 15 13 12 17 17 Si 1.86800 * 119.99798 * 205.84983 * 15 13 12 18 18 H 1.48500 * 109.47102 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47028 * 120.00122 * 17 15 13 20 20 H 1.48500 * 109.46720 * 239.99568 * 17 15 13 21 21 C 1.46508 * 119.99861 * 6.86681 * 12 10 9 22 22 C 1.53001 * 109.46994 * 99.27167 * 21 12 10 23 23 O 1.42903 * 109.47091 * 64.99356 * 22 21 12 24 24 C 1.42905 * 113.99639 * 179.97438 * 23 22 21 25 25 C 1.39823 * 119.83531 * 0.26853 * 9 8 7 26 26 C 1.37647 * 119.92316 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47154 * 300.00259 * 1 2 3 28 28 H 1.08997 * 109.47096 * 59.99672 * 1 2 3 29 29 H 1.08997 * 109.47373 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99933 * 180.02562 * 2 1 3 31 31 H 0.97002 * 120.00066 * 5.21237 * 5 3 2 32 32 H 1.08002 * 119.95983 * 0.02562 * 7 6 5 33 33 H 1.08008 * 120.04339 * 179.72134 * 8 7 6 34 34 H 0.96997 * 119.99738 * 184.98911 * 16 15 13 35 35 H 1.08999 * 109.46663 * 219.26517 * 21 12 10 36 36 H 1.08992 * 109.47352 * 339.26860 * 21 12 10 37 37 H 1.08993 * 109.47276 * 184.99863 * 22 21 12 38 38 H 1.09007 * 109.47279 * 305.00268 * 22 21 12 39 39 H 1.08997 * 109.47325 * 300.00518 * 24 23 22 40 40 H 1.08997 * 109.46891 * 60.01049 * 24 23 22 41 41 H 1.09008 * 109.46439 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.03930 * 180.02562 * 25 9 8 43 43 H 1.07992 * 119.96030 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.1838 2.3697 0.1091 7 6 3.6728 3.3994 0.8933 8 6 4.3554 4.5898 0.9993 9 6 5.5696 4.7598 0.3271 10 6 6.3073 6.0314 0.4434 11 8 5.7040 7.0681 0.6448 12 7 7.6499 6.0448 0.3267 13 6 8.3470 7.1969 0.5734 14 1 9.2145 7.4410 -0.0217 15 6 7.9382 8.0526 1.5900 16 7 7.2579 7.5821 2.6108 17 14 8.3560 9.8712 1.5044 18 1 9.1234 10.1450 0.2629 19 1 7.1024 10.6673 1.4978 20 1 9.1747 10.2470 2.6850 21 6 8.3633 4.8263 -0.0642 22 6 8.6909 4.8840 -1.5576 23 8 9.6061 5.9535 -1.8036 24 6 9.9796 6.0949 -3.1757 25 6 6.0830 3.7209 -0.4553 26 6 5.3918 2.5353 -0.5616 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 3.9716 0.3306 -0.0772 32 1 2.7372 3.2657 1.4161 33 1 3.9559 5.3902 1.6045 34 1 6.9104 8.1888 3.2830 35 1 9.2879 4.7474 0.5078 36 1 7.7363 3.9578 0.1370 37 1 9.1419 3.9413 -1.8673 38 1 7.7750 5.0522 -2.1243 39 1 10.4575 5.1772 -3.5185 40 1 9.0907 6.2879 -3.7761 41 1 10.6759 6.9272 -3.2787 42 1 7.0208 3.8484 -0.9756 43 1 5.7879 1.7323 -1.1654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822286141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:32 Heat of formation + Delta-G solvation = -20.536885 kcal Electronic energy + Delta-G solvation = -27378.091947 eV Core-core repulsion = 23426.285286 eV Total energy + Delta-G solvation = -3951.806661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65778 -39.38534 -37.68164 -36.98212 -34.84711 -34.60200 -34.26263 -32.11752 -30.53271 -29.47752 -28.89894 -26.79343 -25.96718 -24.67592 -22.95948 -22.44684 -21.90793 -20.86914 -19.54380 -18.79447 -17.69857 -16.95500 -16.30098 -16.05258 -15.75934 -15.25216 -15.17928 -14.87009 -14.67503 -14.32611 -14.26211 -13.85653 -13.79761 -13.33342 -13.22767 -13.08457 -12.58106 -12.52880 -12.31485 -12.15838 -11.60668 -11.43287 -11.26232 -10.99570 -10.84358 -10.70690 -10.46358 -10.41292 -10.20208 -9.95959 -9.86926 -9.40627 -9.19264 -8.67312 -8.47313 -8.08756 -7.65622 -7.07838 -6.05654 -3.64785 1.47789 1.81561 2.47987 3.00814 3.41847 3.53155 3.54882 3.94377 4.00180 4.27733 4.38754 4.77497 4.87278 4.99570 5.18582 5.25456 5.28870 5.37413 5.50228 5.52250 5.55153 5.65526 5.74373 5.77207 5.81936 5.83371 5.91993 5.96484 6.05735 6.08893 6.13575 6.35357 6.46825 6.61673 6.64379 6.80581 6.88432 7.07882 7.39124 7.66517 7.73087 7.84083 8.37511 8.38704 9.11549 9.31091 9.75234 10.36570 11.02757 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003467 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.366447 B = 8074.363195 C = 9385.160675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.750 5.750 3 C 0.698 3.302 4 O -0.567 6.567 5 N -0.683 5.683 6 C 0.153 3.847 7 C -0.123 4.123 8 C -0.054 4.054 9 C -0.102 4.102 10 C 0.499 3.501 11 O -0.541 6.541 12 N -0.430 5.430 13 C -0.328 4.328 14 H 0.096 0.904 15 C 0.069 3.931 16 N -0.826 5.826 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.289 1.289 21 C 0.065 3.935 22 C 0.044 3.956 23 O -0.362 6.362 24 C 0.030 3.970 25 C -0.122 4.122 26 C -0.154 4.154 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.397 0.603 31 H 0.403 0.597 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.155 0.845 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -19.469 -7.287 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.406 5.406 3 C 0.399 3.601 4 O -0.442 6.442 5 N -0.330 5.330 6 C 0.058 3.942 7 C -0.144 4.144 8 C -0.074 4.074 9 C -0.106 4.106 10 C 0.288 3.712 11 O -0.421 6.421 12 N -0.150 5.150 13 C -0.455 4.455 14 H 0.113 0.887 15 C -0.141 4.141 16 N -0.460 5.460 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.215 1.215 21 C -0.059 4.059 22 C -0.033 4.033 23 O -0.281 6.281 24 C -0.067 4.067 25 C -0.141 4.141 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.230 0.770 31 H 0.238 0.762 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.172 0.828 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.288 -17.822 -6.807 19.797 hybrid contribution 0.454 -0.320 -0.289 0.626 sum -4.835 -18.142 -7.095 20.071 Atomic orbital electron populations 1.21417 0.77846 1.01993 1.02566 1.44917 1.07915 1.06958 1.80774 1.15984 0.81573 0.84519 0.78066 1.90995 1.67440 1.29931 1.55883 1.42413 1.04800 1.08808 1.76970 1.17485 0.92901 0.86187 0.97629 1.20986 1.00841 0.93349 0.99202 1.21131 0.92965 0.96351 0.96947 1.20560 0.96047 0.95540 0.98455 1.17649 0.82273 0.87242 0.84006 1.90601 1.67031 1.33329 1.51097 1.43178 1.03500 1.08130 1.60176 1.19305 1.13806 0.97681 1.14665 0.88666 1.25122 0.96336 0.99791 0.92820 1.69943 1.32717 1.35379 1.08002 0.86292 0.77874 0.85096 0.77684 1.19484 1.20752 1.21544 1.22559 0.99184 0.91639 0.92486 1.23127 0.92381 0.89249 0.98591 1.88137 1.63526 1.52357 1.24031 1.22687 0.99215 1.00475 0.84323 1.22122 0.99935 0.92439 0.99573 1.20687 0.96054 0.98978 1.01717 0.92167 0.92224 0.90609 0.76960 0.76179 0.85179 0.84987 0.92631 0.90845 0.87480 0.93727 0.93395 0.95012 0.94601 0.90129 0.82817 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.74 10.70 59.84 0.64 1.38 16 2 N -0.75 -5.98 5.72 -72.08 -0.41 -6.40 16 3 C 0.70 8.84 8.28 -86.92 -0.72 8.12 16 4 O -0.57 -9.92 14.10 5.29 0.07 -9.84 16 5 N -0.68 -7.67 5.32 -14.21 -0.08 -7.75 16 6 C 0.15 2.30 6.25 -83.72 -0.52 1.78 16 7 C -0.12 -2.22 8.62 -39.46 -0.34 -2.56 16 8 C -0.05 -1.13 9.58 -39.21 -0.38 -1.51 16 9 C -0.10 -2.21 5.63 -104.95 -0.59 -2.80 16 10 C 0.50 13.34 6.65 -12.50 -0.08 13.25 16 11 O -0.54 -16.76 14.43 5.26 0.08 -16.69 16 12 N -0.43 -11.03 2.57 -116.01 -0.30 -11.33 16 13 C -0.33 -9.30 8.83 -15.00 -0.13 -9.43 16 14 H 0.10 2.67 6.69 -52.49 -0.35 2.32 16 15 C 0.07 2.03 4.12 -17.45 -0.07 1.95 16 16 N -0.83 -25.13 11.86 55.50 0.66 -24.48 16 17 Si 0.90 22.88 29.63 -169.99 -5.04 17.84 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 C 0.07 1.29 5.32 -4.04 -0.02 1.26 16 22 C 0.04 0.75 5.08 37.16 0.19 0.94 16 23 O -0.36 -6.87 8.97 -35.23 -0.32 -7.18 16 24 C 0.03 0.42 11.01 101.05 1.11 1.54 16 25 C -0.12 -2.08 7.51 -39.20 -0.29 -2.38 16 26 C -0.15 -2.17 9.94 -39.46 -0.39 -2.56 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.40 1.72 8.85 -40.82 -0.36 1.36 16 31 H 0.40 2.83 8.83 -40.82 -0.36 2.46 16 32 H 0.13 2.35 6.50 -52.49 -0.34 2.01 16 33 H 0.13 2.93 7.90 -52.48 -0.41 2.51 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 36 H 0.11 1.86 3.82 -55.34 -0.21 1.65 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.82 7.41 -51.93 -0.38 0.43 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.15 2.40 2.69 -52.49 -0.14 2.26 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -39.26 355.63 -7.08 -46.34 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.50 Total: 5.14 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.60 Total: 8.99 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.13 Total: -49.95 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.17 Total: -33.71 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.04 Total: 17.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.26 -7.08 -46.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822286141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.807 kcal (2) G-P(sol) polarization free energy of solvation -39.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds