Wall clock time and date at job start Tue Mar 31 2020 13:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00040 * 2 1 4 4 O 1.21581 * 120.00272 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.39437 * 119.99991 * 185.20868 * 5 3 2 7 7 C 1.39152 * 119.92133 * 34.72492 * 6 5 3 8 8 C 1.37637 * 120.07988 * 180.27347 * 7 6 5 9 9 C 1.39821 * 119.92332 * 359.45308 * 8 7 6 10 10 C 1.47472 * 120.08294 * 180.29621 * 9 8 7 11 11 O 1.21622 * 119.99818 * 331.29784 * 10 9 8 12 12 N 1.34774 * 119.99995 * 151.29879 * 10 9 8 13 13 C 1.36901 * 120.00066 * 186.87272 * 12 10 9 14 14 H 1.07996 * 119.99641 * 216.84373 * 13 12 10 15 15 C 1.39022 * 120.00089 * 36.84256 * 13 12 10 16 16 N 1.31382 * 119.99870 * 25.84128 * 15 13 12 17 17 Si 1.86800 * 119.99798 * 205.84983 * 15 13 12 18 18 H 1.48500 * 109.47102 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47028 * 120.00122 * 17 15 13 20 20 H 1.48500 * 109.46720 * 239.99568 * 17 15 13 21 21 C 1.46508 * 119.99861 * 6.86681 * 12 10 9 22 22 C 1.53001 * 109.46994 * 99.27167 * 21 12 10 23 23 O 1.42903 * 109.47091 * 64.99356 * 22 21 12 24 24 C 1.42905 * 113.99639 * 179.97438 * 23 22 21 25 25 C 1.39823 * 119.83531 * 0.26853 * 9 8 7 26 26 C 1.37647 * 119.92316 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47154 * 300.00259 * 1 2 3 28 28 H 1.08997 * 109.47096 * 59.99672 * 1 2 3 29 29 H 1.08997 * 109.47373 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99933 * 180.02562 * 2 1 3 31 31 H 0.97002 * 120.00066 * 5.21237 * 5 3 2 32 32 H 1.08002 * 119.95983 * 0.02562 * 7 6 5 33 33 H 1.08008 * 120.04339 * 179.72134 * 8 7 6 34 34 H 0.96997 * 119.99738 * 184.98911 * 16 15 13 35 35 H 1.08999 * 109.46663 * 219.26517 * 21 12 10 36 36 H 1.08992 * 109.47352 * 339.26860 * 21 12 10 37 37 H 1.08993 * 109.47276 * 184.99863 * 22 21 12 38 38 H 1.09007 * 109.47279 * 305.00268 * 22 21 12 39 39 H 1.08997 * 109.47325 * 300.00518 * 24 23 22 40 40 H 1.08997 * 109.46891 * 60.01049 * 24 23 22 41 41 H 1.09008 * 109.46439 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.03930 * 180.02562 * 25 9 8 43 43 H 1.07992 * 119.96030 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.1838 2.3697 0.1091 7 6 3.6728 3.3994 0.8933 8 6 4.3554 4.5898 0.9993 9 6 5.5696 4.7598 0.3271 10 6 6.3073 6.0314 0.4434 11 8 5.7040 7.0681 0.6448 12 7 7.6499 6.0448 0.3267 13 6 8.3470 7.1969 0.5734 14 1 9.2145 7.4410 -0.0217 15 6 7.9382 8.0526 1.5900 16 7 7.2579 7.5821 2.6108 17 14 8.3560 9.8712 1.5044 18 1 9.1234 10.1450 0.2629 19 1 7.1024 10.6673 1.4978 20 1 9.1747 10.2470 2.6850 21 6 8.3633 4.8263 -0.0642 22 6 8.6909 4.8840 -1.5576 23 8 9.6061 5.9535 -1.8036 24 6 9.9796 6.0949 -3.1757 25 6 6.0830 3.7209 -0.4553 26 6 5.3918 2.5353 -0.5616 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 3.9716 0.3306 -0.0772 32 1 2.7372 3.2657 1.4161 33 1 3.9559 5.3902 1.6045 34 1 6.9104 8.1888 3.2830 35 1 9.2879 4.7474 0.5078 36 1 7.7363 3.9578 0.1370 37 1 9.1419 3.9413 -1.8673 38 1 7.7750 5.0522 -2.1243 39 1 10.4575 5.1772 -3.5185 40 1 9.0907 6.2879 -3.7761 41 1 10.6759 6.9272 -3.2787 42 1 7.0208 3.8484 -0.9756 43 1 5.7879 1.7323 -1.1654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822286141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:31 Heat of formation + Delta-G solvation = -52.233971 kcal Electronic energy + Delta-G solvation = -27379.466436 eV Core-core repulsion = 23426.285286 eV Total energy + Delta-G solvation = -3953.181150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81333 -40.92720 -39.06454 -38.51415 -36.17666 -35.88693 -35.68138 -34.08302 -32.04385 -30.88426 -30.44189 -27.73630 -27.19441 -26.47292 -24.34059 -23.92663 -23.33761 -21.93831 -21.31569 -19.76617 -18.94342 -18.75723 -17.98133 -17.38915 -16.92939 -16.59905 -16.42075 -16.22591 -16.12964 -15.87201 -15.54595 -15.36781 -15.25453 -14.89228 -14.56645 -14.27659 -14.11605 -13.71668 -13.57464 -13.46508 -13.04087 -13.02332 -12.81961 -12.67676 -12.55201 -12.52243 -12.11006 -12.03192 -11.70507 -11.46623 -11.19450 -10.78914 -10.41951 -10.21915 -10.11265 -9.85991 -9.15957 -9.00346 -8.22372 -5.84791 0.03542 0.43283 1.35769 1.44542 1.52940 1.58006 1.94094 2.31295 2.46320 2.92949 3.02293 3.23162 3.24418 3.36510 3.87920 4.00913 4.06756 4.29094 4.37942 4.41565 4.43940 4.53528 4.55686 4.57305 4.59738 4.65065 4.66645 4.69802 4.92299 4.98162 5.04302 5.11840 5.22224 5.23504 5.38128 5.46249 5.57699 5.63870 5.94002 6.03039 6.28323 6.46910 6.99262 7.02119 7.26368 7.46665 7.70224 8.34657 8.85574 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003467 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.366447 B = 8074.363195 C = 9385.160675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.727 5.727 3 C 0.691 3.309 4 O -0.621 6.621 5 N -0.664 5.664 6 C 0.173 3.827 7 C -0.131 4.131 8 C -0.074 4.074 9 C -0.138 4.138 10 C 0.489 3.511 11 O -0.603 6.603 12 N -0.445 5.445 13 C -0.339 4.339 14 H 0.094 0.906 15 C 0.017 3.983 16 N -0.866 5.866 17 Si 0.959 3.041 18 H -0.257 1.257 19 H -0.299 1.299 20 H -0.274 1.274 21 C 0.060 3.940 22 C 0.048 3.952 23 O -0.405 6.405 24 C 0.026 3.974 25 C -0.109 4.109 26 C -0.128 4.128 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.119 0.881 30 H 0.420 0.580 31 H 0.430 0.570 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.257 0.743 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.175 0.825 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -24.139 -9.816 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.383 5.383 3 C 0.391 3.609 4 O -0.500 6.500 5 N -0.314 5.314 6 C 0.077 3.923 7 C -0.151 4.151 8 C -0.095 4.095 9 C -0.142 4.142 10 C 0.280 3.720 11 O -0.488 6.488 12 N -0.163 5.163 13 C -0.466 4.466 14 H 0.112 0.888 15 C -0.188 4.188 16 N -0.503 5.503 17 Si 0.784 3.216 18 H -0.181 1.181 19 H -0.226 1.226 20 H -0.200 1.200 21 C -0.062 4.062 22 C -0.029 4.029 23 O -0.324 6.324 24 C -0.071 4.071 25 C -0.127 4.127 26 C -0.148 4.148 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.257 0.743 31 H 0.270 0.730 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.192 0.808 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.260 -22.623 -9.364 24.853 hybrid contribution 0.032 0.890 0.394 0.974 sum -4.228 -21.733 -8.971 23.889 Atomic orbital electron populations 1.21595 0.76975 1.04441 1.01270 1.44783 1.08381 1.06453 1.78702 1.16288 0.81822 0.84988 0.77782 1.90984 1.68542 1.32313 1.58175 1.42184 1.04489 1.08588 1.76145 1.17561 0.92987 0.86456 0.95309 1.20893 1.00507 0.93399 1.00326 1.20897 0.93703 0.96931 0.97931 1.20229 0.96593 0.95237 1.02155 1.18496 0.82791 0.88385 0.82307 1.90533 1.68530 1.36050 1.53661 1.43364 1.03543 1.09513 1.59927 1.19471 1.13593 0.99559 1.13972 0.88833 1.25948 0.96632 1.03443 0.92803 1.70035 1.35165 1.36101 1.08954 0.85438 0.77028 0.80501 0.78617 1.18117 1.22576 1.19951 1.22879 0.98607 0.90023 0.94735 1.23108 0.92689 0.91239 0.95891 1.88066 1.63966 1.53541 1.26825 1.22874 0.99621 1.02385 0.82184 1.22262 1.00576 0.91940 0.97963 1.21168 0.94454 0.98951 1.00265 0.93662 0.93453 0.86238 0.74303 0.72999 0.85942 0.88657 0.93385 0.91503 0.84932 0.88361 0.93714 0.91791 0.94463 0.89730 0.80822 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 10.70 127.77 1.37 2.49 16 2 N -0.73 -8.95 5.72 -500.21 -2.86 -11.80 16 3 C 0.69 15.61 8.28 179.05 1.48 17.09 16 4 O -0.62 -21.30 14.10 -3.97 -0.06 -21.36 16 5 N -0.66 -12.08 5.32 -317.14 -1.69 -13.77 16 6 C 0.17 4.67 6.25 38.37 0.24 4.91 16 7 C -0.13 -4.74 8.62 22.35 0.19 -4.55 16 8 C -0.07 -3.30 9.58 22.51 0.22 -3.09 16 9 C -0.14 -6.14 5.63 -20.08 -0.11 -6.26 16 10 C 0.49 27.48 6.65 86.68 0.58 28.06 16 11 O -0.60 -40.24 14.43 -4.10 -0.06 -40.30 16 12 N -0.44 -23.44 2.57 -639.20 -1.64 -25.08 16 13 C -0.34 -19.87 8.83 84.09 0.74 -19.12 16 14 H 0.09 5.38 6.69 -2.91 -0.02 5.36 16 15 C 0.02 1.06 4.12 84.95 0.35 1.41 16 16 N -0.87 -55.95 11.86 21.68 0.26 -55.70 16 17 Si 0.96 49.12 29.63 68.60 2.03 51.15 16 18 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 20 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 21 C 0.06 2.29 5.32 86.38 0.46 2.75 16 22 C 0.05 1.47 5.08 71.98 0.37 1.84 16 23 O -0.40 -14.66 8.97 -148.98 -1.34 -15.99 16 24 C 0.03 0.66 11.01 113.37 1.25 1.91 16 25 C -0.11 -3.42 7.51 22.51 0.17 -3.25 16 26 C -0.13 -2.96 9.94 22.35 0.22 -2.74 16 27 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.42 1.52 8.85 -92.71 -0.82 0.70 16 31 H 0.43 3.38 8.83 -92.71 -0.82 2.56 16 32 H 0.12 4.60 6.50 -2.91 -0.02 4.58 16 33 H 0.10 4.78 7.90 -2.91 -0.02 4.75 16 34 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 35 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 36 H 0.13 4.28 3.82 -5.59 -0.02 4.26 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.40 7.41 -2.38 -0.02 1.39 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.18 4.74 2.69 -2.91 -0.01 4.74 16 43 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -96.39 355.63 1.59 -94.80 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -0.58 Total: 16.61 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 7.52 Total: 21.44 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -5.93 Total: -106.35 kcal Atomic # 8 Polarization: -76.20 SS G_CDS: -1.45 Total: -77.65 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Total: -96.39 1.59 -94.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822286141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.569 kcal (2) G-P(sol) polarization free energy of solvation -96.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds