Wall clock time and date at job start Tue Mar 31 2020 12:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47037 * 2 1 4 4 C 1.46495 * 120.00322 * 270.00457 * 3 2 1 5 5 C 1.50706 * 109.46894 * 269.99918 * 4 3 2 6 6 H 1.08002 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99964 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99899 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46840 * 89.99803 * 9 7 5 11 11 H 1.48499 * 109.47727 * 210.00354 * 9 7 5 12 12 H 1.48501 * 109.46973 * 330.00627 * 9 7 5 13 13 C 1.34781 * 119.99844 * 90.00337 * 3 2 1 14 14 O 1.21587 * 120.00166 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99541 * 0.02562 * 13 3 2 16 16 C 1.40134 * 119.99708 * 175.42201 * 15 13 3 17 17 C 1.38854 * 119.99872 * 35.38530 * 16 15 13 18 18 C 1.38059 * 119.99584 * 180.21316 * 17 16 15 19 19 C 1.38855 * 120.00382 * 359.51601 * 18 17 16 20 20 N 1.40130 * 120.00188 * 180.25148 * 19 18 17 21 21 C 1.46507 * 119.99874 * 114.72024 * 20 19 18 22 22 C 1.34776 * 120.00348 * 294.72018 * 20 19 18 23 23 O 1.21513 * 119.99823 * 5.01015 * 22 20 19 24 24 O 1.34656 * 119.99988 * 185.00621 * 22 20 19 25 25 C 1.38854 * 119.99755 * 0.23501 * 19 18 17 26 26 C 1.38062 * 119.99891 * 359.97438 * 25 19 18 27 27 H 1.09000 * 109.46900 * 299.99778 * 1 2 3 28 28 H 1.08995 * 109.47243 * 59.99672 * 1 2 3 29 29 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46676 * 240.00465 * 2 1 3 31 31 H 1.08995 * 109.47243 * 120.00328 * 2 1 3 32 32 H 1.08999 * 109.47476 * 29.99955 * 4 3 2 33 33 H 1.09003 * 109.47408 * 150.00338 * 4 3 2 34 34 H 0.96998 * 119.99949 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00257 * 355.41580 * 15 13 3 36 36 H 1.07995 * 120.00538 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.00175 * 179.79421 * 18 17 16 38 38 H 1.09002 * 109.46901 * 90.00048 * 21 20 19 39 39 H 1.08996 * 109.47340 * 209.99788 * 21 20 19 40 40 H 1.09000 * 109.46873 * 330.00363 * 21 20 19 41 41 H 0.96700 * 116.99889 * 180.02562 * 24 22 20 42 42 H 1.07995 * 120.00147 * 180.02562 * 25 19 18 43 43 H 1.08000 * 120.00105 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0970 -3.4169 10 1 5.9774 0.8756 -4.2592 11 1 6.3920 3.2642 -4.2003 12 1 6.7735 1.9181 -2.2197 13 6 2.2430 2.0165 1.1673 14 8 2.6487 3.1627 1.1673 15 7 2.0189 1.3809 2.3344 16 6 2.3427 2.0060 3.5461 17 6 2.1837 3.3785 3.6834 18 6 2.5069 3.9949 4.8757 19 6 2.9815 3.2410 5.9408 20 7 3.3045 3.8660 7.1527 21 6 2.5320 3.5653 8.3607 22 6 4.3259 4.7437 7.2071 23 8 4.9081 5.0621 6.1892 24 8 4.7011 5.2676 8.3895 25 6 3.1356 1.8677 5.8051 26 6 2.8165 1.2519 4.6114 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0955 3.1412 -1.1383 34 1 3.6750 3.5165 -4.4439 35 1 1.6334 0.4908 2.3357 36 1 1.8100 3.9643 2.8566 37 1 2.3863 5.0630 4.9815 38 1 2.9874 2.7241 8.8832 39 1 2.5247 4.4378 9.0139 40 1 1.5091 3.3103 8.0836 41 1 5.4385 5.8931 8.3782 42 1 3.5043 1.2813 6.6336 43 1 2.9360 0.1837 4.5060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:26 Heat of formation + Delta-G solvation = -63.937808 kcal Electronic energy + Delta-G solvation = -26819.021730 eV Core-core repulsion = 22865.333063 eV Total energy + Delta-G solvation = -3953.688667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.91829 -40.13673 -38.63932 -36.53722 -35.85704 -35.28634 -33.94432 -32.64129 -30.92674 -30.16736 -29.15688 -27.19974 -26.63153 -23.87702 -23.08852 -22.87878 -22.47021 -20.82168 -19.35975 -18.35009 -17.96850 -17.84129 -16.94044 -16.43053 -16.39963 -16.29775 -15.07333 -14.97560 -14.54002 -14.25375 -14.12492 -13.76000 -13.65581 -13.49726 -13.39253 -12.98413 -12.96867 -12.84080 -12.34947 -12.27154 -12.06083 -11.79244 -11.73026 -11.36583 -11.19808 -10.93499 -10.80987 -10.75095 -10.53056 -10.12947 -10.07923 -9.61379 -9.31453 -9.26538 -8.82360 -8.41431 -7.93605 -7.58589 -6.02540 -4.06885 1.24294 1.47791 2.09799 2.61302 3.15646 3.32249 3.39518 3.45335 3.60835 3.96367 4.16986 4.36262 4.50553 4.82809 4.92395 4.98229 5.10226 5.22302 5.31782 5.38007 5.41962 5.47923 5.53824 5.63554 5.67365 5.82363 5.93627 6.06491 6.16782 6.30998 6.37007 6.40754 6.45059 6.65283 6.71253 6.83630 6.99460 7.22638 7.34963 7.50307 7.66312 7.95339 8.17496 8.24574 8.56381 8.93748 9.22762 9.58527 11.05419 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003044 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.713412 B = 9197.660208 C =10428.733441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.697 3.303 14 O -0.565 6.565 15 N -0.697 5.697 16 C 0.189 3.811 17 C -0.110 4.110 18 C -0.077 4.077 19 C 0.112 3.888 20 N -0.549 5.549 21 C 0.087 3.913 22 C 0.661 3.339 23 O -0.557 6.557 24 O -0.526 6.526 25 C -0.096 4.096 26 C -0.147 4.147 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.402 0.598 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.429 0.571 42 H 0.125 0.875 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -4.884 23.487 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.341 5.341 4 C 0.141 3.859 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.399 3.601 14 O -0.441 6.441 15 N -0.346 5.346 16 C 0.092 3.908 17 C -0.131 4.131 18 C -0.098 4.098 19 C 0.022 3.978 20 N -0.286 5.286 21 C -0.055 4.055 22 C 0.415 3.585 23 O -0.444 6.444 24 O -0.336 6.336 25 C -0.116 4.116 26 C -0.168 4.168 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.288 0.712 42 H 0.143 0.857 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.927 -4.075 22.918 24.020 hybrid contribution 1.353 -0.288 -0.343 1.425 sum -4.574 -4.363 22.575 23.443 Atomic orbital electron populations 1.22258 0.96653 1.01501 1.02568 1.21385 0.93546 0.84359 1.02572 1.47627 1.66966 1.13243 1.06220 1.19237 0.96240 0.93511 0.76862 1.21457 0.97001 1.31897 1.06181 0.92491 1.24918 0.97840 0.94894 0.96399 1.69928 1.35699 1.33446 1.14353 0.86500 0.84751 0.77627 0.78581 1.20689 1.21071 1.19884 1.15949 0.79124 0.84914 0.80082 1.90908 1.51413 1.16374 1.85376 1.43059 1.67097 1.20769 1.03704 1.17658 0.95782 0.92358 0.85006 1.21316 1.00555 0.93846 0.97431 1.21064 0.96775 0.99838 0.92086 1.17189 1.04304 0.91128 0.85210 1.43778 1.31274 1.43644 1.09936 1.21848 0.95934 1.02072 0.85625 1.17758 0.80344 0.78970 0.81475 1.91147 1.56209 1.62505 1.34508 1.84156 1.55145 1.60915 1.33415 1.20783 1.00088 0.93175 0.97531 1.20687 1.03128 1.00100 0.92929 0.93089 0.91763 0.92059 0.89484 0.92376 0.94766 0.93696 0.92723 0.76109 0.83325 0.85799 0.92280 0.90192 0.90430 0.71166 0.85672 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.62 5.85 -4.04 -0.02 1.60 16 3 N -0.61 -12.65 2.46 -180.80 -0.44 -13.09 16 4 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 5 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.70 14.76 8.12 -86.91 -0.71 14.06 16 14 O -0.56 -14.48 13.38 5.29 0.07 -14.41 16 15 N -0.70 -11.10 5.18 -14.18 -0.07 -11.17 16 16 C 0.19 2.93 6.30 -83.61 -0.53 2.40 16 17 C -0.11 -1.85 8.69 -39.42 -0.34 -2.20 16 18 C -0.08 -1.17 9.20 -39.42 -0.36 -1.53 16 19 C 0.11 1.48 4.90 -83.61 -0.41 1.07 16 20 N -0.55 -6.23 2.94 -126.23 -0.37 -6.60 16 21 C 0.09 0.61 10.28 59.85 0.62 1.22 16 22 C 0.66 8.42 8.64 54.05 0.47 8.89 16 23 O -0.56 -9.62 16.62 -19.28 -0.32 -9.94 16 24 O -0.53 -4.43 12.31 -40.37 -0.50 -4.93 16 25 C -0.10 -1.12 9.81 -39.42 -0.39 -1.51 16 26 C -0.15 -1.82 9.96 -39.42 -0.39 -2.22 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.39 8.07 -51.92 -0.42 0.97 16 31 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.40 4.97 6.62 -40.82 -0.27 4.70 16 36 H 0.15 2.83 6.24 -52.49 -0.33 2.51 16 37 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.48 7.46 -51.93 -0.39 0.10 16 40 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 41 H 0.43 1.81 9.11 45.56 0.42 2.22 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -37.72 369.35 -7.54 -45.26 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.05 Total: 5.02 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -2.13 Total: 13.07 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.15 Total: -56.85 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.75 Total: -29.29 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.72 -7.54 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.681 kcal (2) G-P(sol) polarization free energy of solvation -37.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds