Wall clock time and date at job start Tue Mar 31 2020 12:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47037 * 2 1 4 4 C 1.46495 * 120.00322 * 270.00457 * 3 2 1 5 5 C 1.50706 * 109.46894 * 269.99918 * 4 3 2 6 6 H 1.08002 * 120.00100 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99964 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99899 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46840 * 89.99803 * 9 7 5 11 11 H 1.48499 * 109.47727 * 210.00354 * 9 7 5 12 12 H 1.48501 * 109.46973 * 330.00627 * 9 7 5 13 13 C 1.34781 * 119.99844 * 90.00337 * 3 2 1 14 14 O 1.21587 * 120.00166 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99541 * 0.02562 * 13 3 2 16 16 C 1.40134 * 119.99708 * 175.42201 * 15 13 3 17 17 C 1.38854 * 119.99872 * 35.38530 * 16 15 13 18 18 C 1.38059 * 119.99584 * 180.21316 * 17 16 15 19 19 C 1.38855 * 120.00382 * 359.51601 * 18 17 16 20 20 N 1.40130 * 120.00188 * 180.25148 * 19 18 17 21 21 C 1.46507 * 119.99874 * 114.72024 * 20 19 18 22 22 C 1.34776 * 120.00348 * 294.72018 * 20 19 18 23 23 O 1.21513 * 119.99823 * 5.01015 * 22 20 19 24 24 O 1.34656 * 119.99988 * 185.00621 * 22 20 19 25 25 C 1.38854 * 119.99755 * 0.23501 * 19 18 17 26 26 C 1.38062 * 119.99891 * 359.97438 * 25 19 18 27 27 H 1.09000 * 109.46900 * 299.99778 * 1 2 3 28 28 H 1.08995 * 109.47243 * 59.99672 * 1 2 3 29 29 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46676 * 240.00465 * 2 1 3 31 31 H 1.08995 * 109.47243 * 120.00328 * 2 1 3 32 32 H 1.08999 * 109.47476 * 29.99955 * 4 3 2 33 33 H 1.09003 * 109.47408 * 150.00338 * 4 3 2 34 34 H 0.96998 * 119.99949 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00257 * 355.41580 * 15 13 3 36 36 H 1.07995 * 120.00538 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.00175 * 179.79421 * 18 17 16 38 38 H 1.09002 * 109.46901 * 90.00048 * 21 20 19 39 39 H 1.08996 * 109.47340 * 209.99788 * 21 20 19 40 40 H 1.09000 * 109.46873 * 330.00363 * 21 20 19 41 41 H 0.96700 * 116.99889 * 180.02562 * 24 22 20 42 42 H 1.07995 * 120.00147 * 180.02562 * 25 19 18 43 43 H 1.08000 * 120.00105 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0970 -3.4169 10 1 5.9774 0.8756 -4.2592 11 1 6.3920 3.2642 -4.2003 12 1 6.7735 1.9181 -2.2197 13 6 2.2430 2.0165 1.1673 14 8 2.6487 3.1627 1.1673 15 7 2.0189 1.3809 2.3344 16 6 2.3427 2.0060 3.5461 17 6 2.1837 3.3785 3.6834 18 6 2.5069 3.9949 4.8757 19 6 2.9815 3.2410 5.9408 20 7 3.3045 3.8660 7.1527 21 6 2.5320 3.5653 8.3607 22 6 4.3259 4.7437 7.2071 23 8 4.9081 5.0621 6.1892 24 8 4.7011 5.2676 8.3895 25 6 3.1356 1.8677 5.8051 26 6 2.8165 1.2519 4.6114 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0955 3.1412 -1.1383 34 1 3.6750 3.5165 -4.4439 35 1 1.6334 0.4908 2.3357 36 1 1.8100 3.9643 2.8566 37 1 2.3863 5.0630 4.9815 38 1 2.9874 2.7241 8.8832 39 1 2.5247 4.4378 9.0139 40 1 1.5091 3.3103 8.0836 41 1 5.4385 5.8931 8.3782 42 1 3.5043 1.2813 6.6336 43 1 2.9360 0.1837 4.5060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:21 Heat of formation + Delta-G solvation = -91.288701 kcal Electronic energy + Delta-G solvation = -26820.207753 eV Core-core repulsion = 22865.333063 eV Total energy + Delta-G solvation = -3954.874690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.97640 -41.48351 -39.82239 -37.59117 -36.97528 -36.75594 -35.39476 -34.60118 -32.02326 -31.62674 -30.38475 -28.73836 -27.66580 -25.39393 -24.53723 -24.04425 -23.80570 -21.88568 -20.83897 -19.40647 -19.16614 -18.83670 -18.60715 -18.28701 -17.36479 -17.26821 -16.80872 -16.43900 -16.00096 -15.80908 -15.26362 -15.05367 -14.63808 -14.60521 -14.52623 -14.33627 -14.05831 -13.93107 -13.66301 -13.51880 -13.28170 -13.19733 -13.08215 -12.71586 -12.64425 -12.52486 -12.45703 -12.20592 -11.93452 -11.81342 -11.74976 -11.39647 -10.92407 -10.63575 -10.25876 -9.94428 -9.54714 -8.91436 -8.21973 -6.36452 0.12139 0.39477 1.24915 1.35045 1.39016 1.48630 1.63403 1.71300 2.15756 2.38579 2.75629 3.00400 3.08185 3.38014 3.89259 3.98946 4.06636 4.20399 4.34175 4.37394 4.40861 4.54056 4.55503 4.68787 4.76154 4.87698 4.92195 4.96416 5.01417 5.04660 5.20077 5.32973 5.35675 5.38014 5.47265 5.54218 5.57627 5.73317 5.80266 6.03693 6.06504 6.09553 6.13910 6.72431 7.06022 7.30412 7.30752 7.63393 8.84527 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003044 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.713412 B = 9197.660208 C =10428.733441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.612 5.612 4 C 0.279 3.721 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.277 1.277 13 C 0.693 3.307 14 O -0.622 6.622 15 N -0.673 5.673 16 C 0.162 3.838 17 C -0.134 4.134 18 C -0.093 4.093 19 C 0.114 3.886 20 N -0.548 5.548 21 C 0.081 3.919 22 C 0.661 3.339 23 O -0.613 6.613 24 O -0.507 6.507 25 C -0.084 4.084 26 C -0.127 4.127 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.029 0.971 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.422 0.578 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.446 0.554 42 H 0.165 0.835 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 -8.070 26.381 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.346 5.346 4 C 0.157 3.843 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.202 1.202 13 C 0.394 3.606 14 O -0.502 6.502 15 N -0.324 5.324 16 C 0.067 3.933 17 C -0.155 4.155 18 C -0.113 4.113 19 C 0.024 3.976 20 N -0.285 5.285 21 C -0.058 4.058 22 C 0.415 3.585 23 O -0.504 6.504 24 O -0.319 6.319 25 C -0.104 4.104 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.309 0.691 42 H 0.183 0.817 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.370 -7.330 25.905 27.452 hybrid contribution 1.124 0.754 -1.068 1.724 sum -4.246 -6.576 24.837 26.041 Atomic orbital electron populations 1.22181 0.94369 1.03729 1.01734 1.21751 0.95393 0.81203 1.04056 1.47488 1.67273 1.15221 1.04606 1.18643 0.95226 0.91335 0.79092 1.21725 0.98026 1.31960 1.06384 0.93088 1.25820 1.02252 0.94498 0.96476 1.70044 1.37707 1.34178 1.14809 0.85444 0.79137 0.78296 0.78092 1.18466 1.20696 1.20212 1.16151 0.78722 0.84392 0.81289 1.90878 1.53853 1.19028 1.86409 1.42613 1.66525 1.21094 1.02216 1.17879 0.97755 0.92116 0.85599 1.21091 1.02405 0.94857 0.97151 1.21013 0.98042 0.99654 0.92613 1.17348 1.02943 0.91948 0.85388 1.43946 1.31135 1.42930 1.10461 1.22147 0.96188 1.03483 0.84026 1.17932 0.80192 0.78751 0.81602 1.91123 1.58209 1.64429 1.36620 1.84137 1.55882 1.61017 1.30832 1.21186 0.98425 0.92469 0.98308 1.21047 1.00573 1.01633 0.91522 0.92507 0.94078 0.88153 0.90232 0.88616 0.95268 0.98502 0.92405 0.73764 0.87128 0.86903 0.90005 0.89163 0.89238 0.69069 0.81728 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.89 5.85 86.38 0.51 3.39 16 3 N -0.61 -26.31 2.46 -844.18 -2.07 -28.38 16 4 C 0.28 15.28 5.16 85.64 0.44 15.73 16 5 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 9 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.69 30.44 8.12 179.05 1.45 31.89 16 14 O -0.62 -34.30 13.38 -3.99 -0.05 -34.35 16 15 N -0.67 -21.06 5.18 -317.04 -1.64 -22.70 16 16 C 0.16 4.96 6.30 38.11 0.24 5.20 16 17 C -0.13 -4.78 8.69 22.37 0.19 -4.58 16 18 C -0.09 -2.93 9.20 22.38 0.21 -2.72 16 19 C 0.11 2.87 4.90 38.11 0.19 3.05 16 20 N -0.55 -11.30 2.94 -783.68 -2.30 -13.60 16 21 C 0.08 0.86 10.28 127.77 1.31 2.17 16 22 C 0.66 16.07 8.64 129.79 1.12 17.19 16 23 O -0.61 -21.47 16.62 19.80 0.33 -21.14 16 24 O -0.51 -7.44 12.31 -55.66 -0.69 -8.12 16 25 C -0.08 -1.67 9.81 22.38 0.22 -1.45 16 26 C -0.13 -2.72 9.96 22.38 0.22 -2.50 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 31 H 0.10 2.08 6.43 -2.39 -0.02 2.06 16 32 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.42 9.34 6.62 -92.71 -0.61 8.73 16 36 H 0.11 4.75 6.24 -2.91 -0.02 4.74 16 37 H 0.11 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.79 7.46 -2.39 -0.02 0.77 16 40 H 0.09 0.75 8.05 -2.39 -0.02 0.73 16 41 H 0.45 2.92 9.11 -74.06 -0.67 2.25 16 42 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -89.25 369.35 3.19 -86.06 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.24 Total: 17.27 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 7.54 Total: 33.53 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -5.73 Total: -121.46 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -0.41 Total: -63.62 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -89.25 3.19 -86.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.231 kcal (2) G-P(sol) polarization free energy of solvation -89.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds