Wall clock time and date at job start Tue Mar 31 2020 12:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47113 * 2 1 4 4 C 1.46497 * 120.00114 * 269.99713 * 3 2 1 5 5 C 1.50700 * 109.47218 * 270.00146 * 4 3 2 6 6 H 1.07998 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99890 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00274 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47251 * 119.99900 * 9 7 5 12 12 H 1.48492 * 109.47164 * 240.00043 * 9 7 5 13 13 C 1.34783 * 119.99937 * 90.00025 * 3 2 1 14 14 O 1.21280 * 119.99895 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99741 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.46868 * 180.02562 * 15 13 3 17 17 C 1.39673 * 119.99758 * 180.02562 * 16 15 13 18 18 C 1.38983 * 120.04142 * 359.96896 * 17 16 15 19 19 C 1.38124 * 120.06297 * 180.02562 * 18 17 16 20 20 C 1.38190 * 120.14666 * 0.02562 * 19 18 17 21 21 C 1.38899 * 120.07311 * 0.02562 * 20 19 18 22 22 N 1.39957 * 120.02959 * 180.02562 * 21 20 19 23 23 C 1.34771 * 119.99890 * 144.89013 * 22 21 20 24 24 O 1.21510 * 120.00485 * 4.62720 * 23 22 21 25 25 O 1.34654 * 119.99718 * 184.62138 * 23 22 21 26 26 C 1.38750 * 119.94181 * 359.97438 * 21 20 19 27 27 H 1.09002 * 109.47018 * 300.00059 * 1 2 3 28 28 H 1.09009 * 109.47025 * 59.99582 * 1 2 3 29 29 H 1.08991 * 109.47570 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47296 * 240.00285 * 2 1 3 31 31 H 1.08995 * 109.46990 * 119.99859 * 2 1 3 32 32 H 1.08995 * 109.47054 * 30.00517 * 4 3 2 33 33 H 1.09000 * 109.46838 * 150.00118 * 4 3 2 34 34 H 0.96999 * 120.00373 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47636 * 59.99623 * 15 13 3 36 36 H 1.09005 * 109.46542 * 299.99469 * 15 13 3 37 37 H 0.97001 * 120.00396 * 359.97438 * 16 15 13 38 38 H 1.07996 * 119.96898 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.92788 * 179.97438 * 19 18 17 40 40 H 1.07996 * 119.96319 * 179.97438 * 20 19 18 41 41 H 0.97005 * 119.99722 * 324.89101 * 22 21 20 42 42 H 0.96698 * 116.99735 * 180.02562 * 25 23 22 43 43 H 1.07998 * 120.07434 * 179.72663 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0955 -3.4175 10 1 6.6005 1.2395 -2.4175 11 1 5.9202 1.4162 -4.7381 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3090 2.2037 3.5858 17 6 2.1546 1.7644 4.9027 18 6 1.7001 0.4759 5.1576 19 6 1.5467 0.0412 6.4596 20 6 1.8440 0.8853 7.5126 21 6 2.2976 2.1745 7.2647 22 7 2.5989 3.0283 8.3318 23 6 3.6186 3.9034 8.2275 24 8 4.2225 4.0104 7.1786 25 8 3.9679 4.6593 9.2857 26 6 2.4529 2.6146 5.9580 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0956 3.1410 -1.1383 34 1 3.6750 3.5156 -4.4443 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 2.6265 3.1030 3.4087 38 1 1.4665 -0.1860 4.3368 39 1 1.1930 -0.9604 6.6552 40 1 1.7226 0.5424 8.5295 41 1 2.0738 2.9903 9.1466 42 1 4.7052 5.2728 9.1626 43 1 2.8012 3.6181 5.7627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:20 Heat of formation + Delta-G solvation = -84.381205 kcal Electronic energy + Delta-G solvation = -26332.640800 eV Core-core repulsion = 22378.065641 eV Total energy + Delta-G solvation = -3954.575159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00635 -39.62468 -38.92278 -36.70506 -35.83907 -35.36689 -34.21373 -32.83125 -30.56875 -30.15519 -29.34372 -27.70650 -25.90713 -23.96992 -23.09641 -22.62341 -22.26007 -20.94189 -19.39835 -18.60618 -17.84364 -17.48155 -16.57105 -16.48279 -16.28968 -16.07649 -15.88542 -15.24582 -14.86095 -14.71147 -14.23268 -13.89149 -13.79332 -13.59208 -13.48463 -13.33080 -12.96329 -12.68067 -12.17774 -12.07102 -11.94323 -11.74546 -11.67854 -11.58994 -11.24294 -10.96621 -10.91462 -10.77616 -10.58369 -10.49720 -10.17103 -9.91275 -9.66356 -9.09524 -8.46729 -8.42083 -7.77721 -7.37523 -6.07615 -4.12449 1.24963 1.56198 2.01338 2.53101 3.23619 3.28556 3.32501 3.36739 3.41739 3.84228 3.95894 4.28510 4.42659 4.87231 4.89060 5.12037 5.17558 5.23518 5.27322 5.37041 5.37698 5.47129 5.53686 5.58892 5.65589 5.73558 5.97607 6.09062 6.17658 6.18338 6.26551 6.36741 6.43325 6.47572 6.78792 6.97415 7.03151 7.35207 7.39424 7.46983 7.85763 7.88453 8.02952 8.18781 8.30435 8.81398 8.96893 9.52876 11.00587 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.002717 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.906720 B =10302.256568 C =11580.678774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.500 3.500 14 O -0.537 6.537 15 C 0.104 3.896 16 N -0.727 5.727 17 C 0.244 3.756 18 C -0.213 4.213 19 C -0.052 4.052 20 C -0.206 4.206 21 C 0.196 3.804 22 N -0.648 5.648 23 C 0.661 3.339 24 O -0.552 6.552 25 O -0.526 6.526 26 C -0.196 4.196 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.417 0.583 42 H 0.433 0.567 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -6.362 23.755 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.285 3.715 14 O -0.415 6.415 15 C -0.024 4.024 16 N -0.357 5.357 17 C 0.137 3.863 18 C -0.236 4.236 19 C -0.071 4.071 20 C -0.229 4.229 21 C 0.103 3.897 22 N -0.300 5.300 23 C 0.413 3.587 24 O -0.439 6.439 25 O -0.337 6.337 26 C -0.221 4.221 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.253 0.747 42 H 0.293 0.707 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.316 -5.898 22.986 24.557 hybrid contribution 1.331 0.513 -0.185 1.438 sum -4.985 -5.386 22.801 23.953 Atomic orbital electron populations 1.22229 0.96561 1.01613 1.02433 1.21480 0.93671 0.83964 1.02974 1.48227 1.63228 1.13351 1.07532 1.19318 0.96452 0.93668 0.77875 1.21455 0.96834 1.32004 1.06290 0.92379 1.24937 0.97920 0.94859 0.96380 1.69938 1.35647 1.33424 1.14320 0.86434 0.84541 0.78101 0.78305 1.19777 1.20940 1.20851 1.20173 0.78977 0.87098 0.85222 1.90673 1.45979 1.18069 1.86749 1.21207 1.01535 0.93692 0.86008 1.44542 1.72571 1.17531 1.01085 1.17607 0.91936 0.92470 0.84259 1.20691 1.09959 0.95464 0.97528 1.20602 0.96472 0.98590 0.91432 1.20500 1.10750 0.92082 0.99544 1.17072 0.98424 0.88648 0.85560 1.41842 1.32100 1.37051 1.19017 1.17766 0.80386 0.78868 0.81648 1.91131 1.55196 1.69129 1.28459 1.84147 1.55682 1.53443 1.40405 1.20616 1.09775 1.01723 0.89989 0.93017 0.91937 0.91955 0.89619 0.91613 0.94771 0.93828 0.92728 0.89692 0.89716 0.74804 0.85881 0.85652 0.86133 0.74698 0.70659 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -12.05 2.46 -175.07 -0.43 -12.48 16 4 C 0.25 6.31 5.16 -5.20 -0.03 6.28 16 5 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.50 10.09 7.74 -10.98 -0.09 10.01 16 14 O -0.54 -13.23 15.25 5.56 0.08 -13.15 16 15 C 0.10 1.54 3.94 -5.19 -0.02 1.52 16 16 N -0.73 -11.24 5.70 -59.83 -0.34 -11.58 16 17 C 0.24 3.38 6.65 -83.81 -0.56 2.82 16 18 C -0.21 -2.44 9.31 -39.35 -0.37 -2.81 16 19 C -0.05 -0.49 10.03 -39.64 -0.40 -0.89 16 20 C -0.21 -1.97 9.96 -39.35 -0.39 -2.36 16 21 C 0.20 2.25 6.30 -83.71 -0.53 1.72 16 22 N -0.65 -5.99 5.34 -14.29 -0.08 -6.07 16 23 C 0.66 7.14 8.97 54.05 0.48 7.62 16 24 O -0.55 -8.26 14.57 -19.28 -0.28 -8.54 16 25 O -0.53 -3.72 13.48 -40.36 -0.54 -4.26 16 26 C -0.20 -2.74 8.53 -39.20 -0.33 -3.07 16 27 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 28 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 1.13 7.21 -51.93 -0.37 0.76 16 36 H 0.09 1.05 6.99 -51.93 -0.36 0.69 16 37 H 0.41 7.15 7.45 -40.82 -0.30 6.85 16 38 H 0.12 1.23 6.72 -52.49 -0.35 0.88 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.42 2.45 8.93 -40.82 -0.36 2.08 16 42 H 0.43 1.30 9.11 45.56 0.42 1.71 16 43 H 0.14 2.17 6.23 -52.49 -0.33 1.84 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -36.34 366.94 -7.47 -43.81 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.84 Total: 8.47 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -2.29 Total: 7.11 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.11 Total: -55.88 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.74 Total: -25.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.34 -7.47 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.569 kcal (2) G-P(sol) polarization free energy of solvation -36.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds