Wall clock time and date at job start Tue Mar 31 2020 12:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47113 * 2 1 4 4 C 1.46497 * 120.00114 * 269.99713 * 3 2 1 5 5 C 1.50700 * 109.47218 * 270.00146 * 4 3 2 6 6 H 1.07998 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99890 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00274 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47251 * 119.99900 * 9 7 5 12 12 H 1.48492 * 109.47164 * 240.00043 * 9 7 5 13 13 C 1.34783 * 119.99937 * 90.00025 * 3 2 1 14 14 O 1.21280 * 119.99895 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99741 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.46868 * 180.02562 * 15 13 3 17 17 C 1.39673 * 119.99758 * 180.02562 * 16 15 13 18 18 C 1.38983 * 120.04142 * 359.96896 * 17 16 15 19 19 C 1.38124 * 120.06297 * 180.02562 * 18 17 16 20 20 C 1.38190 * 120.14666 * 0.02562 * 19 18 17 21 21 C 1.38899 * 120.07311 * 0.02562 * 20 19 18 22 22 N 1.39957 * 120.02959 * 180.02562 * 21 20 19 23 23 C 1.34771 * 119.99890 * 144.89013 * 22 21 20 24 24 O 1.21510 * 120.00485 * 4.62720 * 23 22 21 25 25 O 1.34654 * 119.99718 * 184.62138 * 23 22 21 26 26 C 1.38750 * 119.94181 * 359.97438 * 21 20 19 27 27 H 1.09002 * 109.47018 * 300.00059 * 1 2 3 28 28 H 1.09009 * 109.47025 * 59.99582 * 1 2 3 29 29 H 1.08991 * 109.47570 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47296 * 240.00285 * 2 1 3 31 31 H 1.08995 * 109.46990 * 119.99859 * 2 1 3 32 32 H 1.08995 * 109.47054 * 30.00517 * 4 3 2 33 33 H 1.09000 * 109.46838 * 150.00118 * 4 3 2 34 34 H 0.96999 * 120.00373 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47636 * 59.99623 * 15 13 3 36 36 H 1.09005 * 109.46542 * 299.99469 * 15 13 3 37 37 H 0.97001 * 120.00396 * 359.97438 * 16 15 13 38 38 H 1.07996 * 119.96898 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.92788 * 179.97438 * 19 18 17 40 40 H 1.07996 * 119.96319 * 179.97438 * 20 19 18 41 41 H 0.97005 * 119.99722 * 324.89101 * 22 21 20 42 42 H 0.96698 * 116.99735 * 180.02562 * 25 23 22 43 43 H 1.07998 * 120.07434 * 179.72663 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0955 -3.4175 10 1 6.6005 1.2395 -2.4175 11 1 5.9202 1.4162 -4.7381 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3090 2.2037 3.5858 17 6 2.1546 1.7644 4.9027 18 6 1.7001 0.4759 5.1576 19 6 1.5467 0.0412 6.4596 20 6 1.8440 0.8853 7.5126 21 6 2.2976 2.1745 7.2647 22 7 2.5989 3.0283 8.3318 23 6 3.6186 3.9034 8.2275 24 8 4.2225 4.0104 7.1786 25 8 3.9679 4.6593 9.2857 26 6 2.4529 2.6146 5.9580 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0956 3.1410 -1.1383 34 1 3.6750 3.5156 -4.4443 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 2.6265 3.1030 3.4087 38 1 1.4665 -0.1860 4.3368 39 1 1.1930 -0.9604 6.6552 40 1 1.7226 0.5424 8.5295 41 1 2.0738 2.9903 9.1466 42 1 4.7052 5.2728 9.1626 43 1 2.8012 3.6181 5.7627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:17 Heat of formation + Delta-G solvation = -113.312120 kcal Electronic energy + Delta-G solvation = -26333.895339 eV Core-core repulsion = 22378.065641 eV Total energy + Delta-G solvation = -3955.829697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83746 -40.99897 -39.97402 -37.55538 -37.08767 -36.63563 -35.21362 -34.86602 -31.79908 -31.39869 -30.30181 -29.27953 -27.37263 -24.97600 -24.65467 -24.01762 -23.11551 -21.89644 -20.27401 -19.98762 -18.85832 -18.61104 -18.39682 -17.63724 -17.47028 -17.16360 -16.92072 -16.61658 -16.50109 -15.71831 -15.68203 -15.02596 -14.79518 -14.69675 -14.57118 -14.39013 -14.19400 -14.17934 -13.65389 -13.48212 -13.26716 -13.07575 -12.72413 -12.69974 -12.56741 -12.52906 -12.43817 -12.19516 -11.95389 -11.79586 -11.71338 -11.42669 -10.80271 -10.74377 -10.67492 -9.51604 -9.27977 -8.35446 -8.25431 -6.40005 0.39304 0.71578 1.30454 1.34098 1.36880 1.48285 1.68383 1.70029 2.04460 2.36182 2.63255 2.99781 3.04505 3.53539 3.62047 4.08080 4.10621 4.26148 4.32335 4.39829 4.40980 4.45761 4.56937 4.66175 4.70559 4.78682 4.94271 4.99341 5.05722 5.19144 5.28524 5.40336 5.41632 5.47591 5.54419 5.66462 5.68667 5.80015 5.99528 6.02913 6.32076 6.36847 6.62702 6.68117 6.75536 7.22457 7.31632 7.37391 8.81944 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.002717 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.906720 B =10302.256568 C =11580.678774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.261 3.739 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.284 1.284 13 C 0.489 3.511 14 O -0.595 6.595 15 C 0.123 3.877 16 N -0.744 5.744 17 C 0.221 3.779 18 C -0.214 4.214 19 C -0.045 4.045 20 C -0.193 4.193 21 C 0.187 3.813 22 N -0.635 5.635 23 C 0.660 3.340 24 O -0.601 6.601 25 O -0.511 6.511 26 C -0.223 4.223 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.027 0.973 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.398 0.602 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.434 0.566 42 H 0.449 0.551 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -9.790 26.318 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.210 1.210 13 C 0.278 3.722 14 O -0.476 6.476 15 C -0.004 4.004 16 N -0.375 5.375 17 C 0.117 3.883 18 C -0.238 4.238 19 C -0.064 4.064 20 C -0.215 4.215 21 C 0.093 3.907 22 N -0.289 5.289 23 C 0.414 3.586 24 O -0.492 6.492 25 O -0.323 6.323 26 C -0.249 4.249 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.233 0.767 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.173 0.827 41 H 0.274 0.726 42 H 0.313 0.687 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.864 -9.386 25.629 28.144 hybrid contribution 1.444 1.595 -0.853 2.315 sum -5.419 -7.791 24.777 26.532 Atomic orbital electron populations 1.22168 0.94290 1.03796 1.01738 1.21863 0.95521 0.80859 1.04453 1.48234 1.63256 1.15320 1.05891 1.18739 0.95410 0.91526 0.80336 1.21730 0.97860 1.31994 1.06476 0.92860 1.25852 1.02355 0.94471 0.96480 1.70053 1.37699 1.34227 1.14820 0.85373 0.79027 0.77957 0.78481 1.19174 1.19200 1.20954 1.21182 0.77549 0.86647 0.86851 1.90641 1.48430 1.20837 1.87737 1.21173 1.03790 0.93068 0.82407 1.44595 1.73881 1.16998 1.02022 1.17824 0.93552 0.93774 0.83195 1.21003 1.09149 0.94329 0.99279 1.21086 0.94884 1.00077 0.90379 1.20933 1.08413 0.90685 1.01486 1.17271 0.98524 0.89865 0.85055 1.41750 1.31723 1.36255 1.19193 1.17950 0.80258 0.78940 0.81488 1.91119 1.56912 1.70624 1.30502 1.84136 1.56413 1.53235 1.38527 1.20575 1.11580 1.00940 0.91756 0.91995 0.94407 0.88209 0.90624 0.87625 0.95547 0.98647 0.92386 0.87327 0.86477 0.76677 0.83956 0.81831 0.82675 0.72624 0.68704 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.93 16 2 C 0.09 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -24.76 2.46 -826.18 -2.03 -26.79 16 4 C 0.26 14.13 5.16 85.63 0.44 14.58 16 5 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 9 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 C 0.49 20.29 7.74 87.66 0.68 20.97 16 14 O -0.59 -31.29 15.25 -3.03 -0.05 -31.34 16 15 C 0.12 3.48 3.94 85.63 0.34 3.81 16 16 N -0.74 -23.49 5.70 -343.19 -1.96 -25.44 16 17 C 0.22 6.01 6.65 38.20 0.25 6.26 16 18 C -0.21 -4.23 9.31 22.42 0.21 -4.02 16 19 C -0.05 -0.66 10.03 22.23 0.22 -0.44 16 20 C -0.19 -2.94 9.96 22.42 0.22 -2.72 16 21 C 0.19 4.01 6.30 38.12 0.24 4.25 16 22 N -0.64 -10.92 5.34 -429.52 -2.29 -13.22 16 23 C 0.66 14.16 8.97 129.79 1.16 15.32 16 24 O -0.60 -18.88 14.57 19.81 0.29 -18.59 16 25 O -0.51 -6.65 13.48 -55.63 -0.75 -7.40 16 26 C -0.22 -6.40 8.53 22.52 0.19 -6.21 16 27 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 28 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.11 2.16 6.44 -2.39 -0.02 2.15 16 32 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 33 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 35 H 0.11 2.56 7.21 -2.39 -0.02 2.54 16 36 H 0.12 2.54 6.99 -2.38 -0.02 2.52 16 37 H 0.40 14.91 7.45 -92.71 -0.69 14.22 16 38 H 0.14 2.18 6.72 -2.91 -0.02 2.16 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.43 4.07 8.93 -92.70 -0.83 3.24 16 42 H 0.45 2.31 9.11 -74.06 -0.67 1.63 16 43 H 0.11 3.72 6.23 -2.91 -0.02 3.70 16 Total: -1.00 -86.15 366.94 0.33 -85.82 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -1.11 Total: 24.04 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 5.91 Total: 21.72 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.00 Total: -121.88 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -0.51 Total: -57.33 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -86.15 0.33 -85.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.487 kcal (2) G-P(sol) polarization free energy of solvation -86.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds