Wall clock time and date at job start Tue Mar 31 2020 12:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47035 * 2 1 4 4 C 1.46497 * 119.99803 * 270.00181 * 3 2 1 5 5 C 1.50699 * 109.47094 * 269.99744 * 4 3 2 6 6 H 1.08002 * 119.99881 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00152 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00340 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99932 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46812 * 120.00244 * 9 7 5 12 12 H 1.48506 * 109.47052 * 239.99955 * 9 7 5 13 13 C 1.34775 * 120.00009 * 89.99769 * 3 2 1 14 14 O 1.21582 * 119.99680 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00058 * 359.97438 * 13 3 2 16 16 C 1.39952 * 120.00210 * 184.59035 * 15 13 3 17 17 C 1.38864 * 120.06618 * 324.91622 * 16 15 13 18 18 C 1.38116 * 119.92871 * 180.02562 * 17 16 15 19 19 C 1.38283 * 120.06909 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.92829 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.47038 * 90.00550 * 20 19 18 22 22 C 1.34778 * 120.00218 * 179.97438 * 21 20 19 23 23 O 1.21511 * 119.99698 * 359.97438 * 22 21 20 24 24 O 1.34633 * 120.00150 * 179.97438 * 22 21 20 25 25 C 1.38278 * 120.13924 * 0.23902 * 19 18 17 26 26 C 1.38115 * 120.07031 * 359.47911 * 25 19 18 27 27 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47157 * 300.00029 * 1 2 3 29 29 H 1.09004 * 109.47503 * 60.00048 * 1 2 3 30 30 H 1.09002 * 109.47157 * 239.99971 * 2 1 3 31 31 H 1.08999 * 109.47077 * 119.99816 * 2 1 3 32 32 H 1.09001 * 109.47414 * 29.99671 * 4 3 2 33 33 H 1.08997 * 109.47290 * 149.99878 * 4 3 2 34 34 H 0.97002 * 120.00482 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00198 * 4.59633 * 15 13 3 36 36 H 1.08000 * 120.04233 * 359.97438 * 17 16 15 37 37 H 1.07999 * 119.96641 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47332 * 210.00141 * 20 19 18 39 39 H 1.08992 * 109.47554 * 330.00373 * 20 19 18 40 40 H 0.97000 * 119.99599 * 359.97438 * 21 20 19 41 41 H 0.96697 * 117.00032 * 180.02562 * 24 22 21 42 42 H 1.07997 * 119.96305 * 179.72346 * 25 19 18 43 43 H 1.08003 * 120.03571 * 180.25554 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1248 -3.6187 9 14 5.9131 2.0955 -3.4175 10 1 6.6004 1.2396 -2.4176 11 1 5.9200 1.4163 -4.7381 12 1 6.6209 3.3966 -3.5264 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1628 1.1671 15 7 2.0178 1.3815 2.3344 16 6 2.1584 2.0704 3.5444 17 6 3.1401 3.0430 3.6813 18 6 3.2767 3.7207 4.8769 19 6 2.4375 3.4314 5.9372 20 6 2.5897 4.1724 7.2405 21 7 1.7496 5.3724 7.2209 22 6 1.7244 6.1950 8.2883 23 8 2.3982 5.9409 9.2671 24 8 0.9527 7.2981 8.2701 25 6 1.4625 2.4596 5.8058 26 6 1.3170 1.7824 4.6109 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0954 3.1410 -1.1384 34 1 3.6748 3.5153 -4.4446 35 1 1.7583 0.4469 2.3358 36 1 3.7967 3.2686 2.8540 37 1 4.0397 4.4775 4.9839 38 1 2.2823 3.5271 8.0635 39 1 3.6322 4.4609 7.3749 40 1 1.2114 5.5750 6.4397 41 1 0.9679 7.8575 9.0587 42 1 0.8116 2.2328 6.6372 43 1 0.5526 1.0264 4.5076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:02 Heat of formation + Delta-G solvation = -82.973650 kcal Electronic energy + Delta-G solvation = -26233.475650 eV Core-core repulsion = 22278.961528 eV Total energy + Delta-G solvation = -3954.514123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59453 -40.28095 -38.81136 -36.57971 -35.74314 -35.21539 -34.14732 -32.74692 -30.94303 -30.40613 -30.18412 -27.28527 -25.80466 -23.22947 -23.12125 -22.82825 -22.09336 -21.20773 -19.42252 -19.23692 -18.02653 -17.49588 -16.99668 -16.48340 -16.28090 -15.86491 -15.36480 -15.15104 -14.91472 -14.51275 -14.16176 -13.84680 -13.81202 -13.49095 -13.47365 -13.33827 -13.09415 -12.66962 -12.40553 -12.12850 -11.81863 -11.74003 -11.65442 -11.26702 -11.19523 -10.97968 -10.96776 -10.84634 -10.60018 -10.18896 -10.09158 -9.68741 -9.51779 -9.32484 -8.88269 -8.47771 -8.09989 -7.67665 -6.08349 -4.13211 1.12191 1.42920 2.32398 2.58497 3.09858 3.27042 3.35049 3.39047 3.59499 3.96278 4.28932 4.41534 4.44811 4.59694 4.77071 4.97525 5.13397 5.17427 5.25945 5.35538 5.42798 5.49468 5.56799 5.64046 5.74154 5.88670 5.96371 6.01461 6.12333 6.24347 6.36074 6.37412 6.41593 6.53999 6.67782 6.77790 7.13328 7.17150 7.29548 7.44027 7.59662 7.89189 8.14344 8.18213 8.49445 8.87527 9.15057 9.52425 10.99566 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002546 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.750653 B =10995.099620 C =11909.148472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.605 5.605 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.698 3.302 14 O -0.567 6.567 15 N -0.697 5.697 16 C 0.195 3.805 17 C -0.124 4.124 18 C -0.076 4.076 19 C -0.149 4.149 20 C 0.186 3.814 21 N -0.702 5.702 22 C 0.661 3.339 23 O -0.584 6.584 24 O -0.529 6.529 25 C -0.077 4.077 26 C -0.160 4.160 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.402 0.598 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.410 0.590 41 H 0.428 0.572 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -2.777 19.276 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.400 3.600 14 O -0.443 6.443 15 N -0.347 5.347 16 C 0.098 3.902 17 C -0.144 4.144 18 C -0.095 4.095 19 C -0.150 4.150 20 C 0.065 3.935 21 N -0.363 5.363 22 C 0.413 3.587 23 O -0.474 6.474 24 O -0.338 6.338 25 C -0.097 4.097 26 C -0.181 4.181 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.166 0.834 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.246 0.754 41 H 0.287 0.713 42 H 0.142 0.858 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.580 -2.177 19.078 20.298 hybrid contribution 0.529 -0.249 -0.385 0.700 sum -6.051 -2.426 18.694 19.798 Atomic orbital electron populations 1.22247 0.96602 1.01505 1.02578 1.21381 0.93631 0.84287 1.02467 1.47639 1.66819 1.13296 1.06245 1.19250 0.96296 0.93514 0.76865 1.21474 0.96938 1.31906 1.06232 0.92437 1.24926 0.97859 0.94912 0.96376 1.69935 1.35588 1.33471 1.14333 0.86448 0.84614 0.78077 0.78301 1.19838 1.20976 1.20852 1.15937 0.79192 0.84787 0.80079 1.90890 1.51193 1.16763 1.85457 1.43067 1.73533 1.14270 1.03791 1.17697 0.93449 0.94085 0.84975 1.21508 0.97840 0.96884 0.98187 1.20989 0.98261 0.98411 0.91823 1.19598 0.99865 1.00216 0.95368 1.20122 0.94774 0.83510 0.95110 1.44847 1.49396 1.24689 1.17335 1.17833 0.78286 0.79355 0.83220 1.91055 1.46701 1.75713 1.33958 1.84200 1.64986 1.35875 1.48770 1.20733 0.96955 0.95134 0.96838 1.20848 0.99938 1.03760 0.93600 0.92054 0.93087 0.91773 0.89431 0.92480 0.94747 0.93705 0.92726 0.76064 0.83405 0.85707 0.90425 0.90342 0.75414 0.71272 0.85826 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.61 -12.20 2.46 -180.81 -0.44 -12.64 16 4 C 0.26 6.56 5.16 -5.20 -0.03 6.53 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.84 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.70 14.08 8.12 -86.92 -0.71 13.37 16 14 O -0.57 -13.76 13.36 5.29 0.07 -13.69 16 15 N -0.70 -10.50 5.22 -14.23 -0.07 -10.57 16 16 C 0.20 2.77 6.30 -83.69 -0.53 2.24 16 17 C -0.12 -1.88 8.69 -39.39 -0.34 -2.22 16 18 C -0.08 -0.91 9.69 -39.61 -0.38 -1.30 16 19 C -0.15 -1.51 5.25 -104.59 -0.55 -2.06 16 20 C 0.19 1.71 5.80 -5.19 -0.03 1.68 16 21 N -0.70 -6.55 5.55 -66.47 -0.37 -6.92 16 22 C 0.66 6.99 9.12 54.06 0.49 7.49 16 23 O -0.58 -8.05 17.13 -19.28 -0.33 -8.38 16 24 O -0.53 -4.14 13.48 -40.31 -0.54 -4.68 16 25 C -0.08 -0.75 9.69 -39.61 -0.38 -1.13 16 26 C -0.16 -1.75 9.97 -39.40 -0.39 -2.15 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.68 6.30 -51.93 -0.33 0.35 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.40 4.78 6.52 -40.82 -0.27 4.51 16 36 H 0.15 2.71 6.22 -52.49 -0.33 2.39 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.08 0.67 8.08 -51.93 -0.42 0.26 16 39 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.41 3.47 8.57 -40.82 -0.35 3.12 16 41 H 0.43 1.43 9.11 45.56 0.42 1.84 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -35.41 371.32 -8.29 -43.70 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.00 Total: 7.36 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -2.91 Total: 9.06 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.15 Total: -55.47 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.80 Total: -26.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.41 -8.29 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.276 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds