Wall clock time and date at job start Tue Mar 31 2020 12:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47035 * 2 1 4 4 C 1.46497 * 119.99803 * 270.00181 * 3 2 1 5 5 C 1.50699 * 109.47094 * 269.99744 * 4 3 2 6 6 H 1.08002 * 119.99881 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00152 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00340 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99932 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46812 * 120.00244 * 9 7 5 12 12 H 1.48506 * 109.47052 * 239.99955 * 9 7 5 13 13 C 1.34775 * 120.00009 * 89.99769 * 3 2 1 14 14 O 1.21582 * 119.99680 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00058 * 359.97438 * 13 3 2 16 16 C 1.39952 * 120.00210 * 184.59035 * 15 13 3 17 17 C 1.38864 * 120.06618 * 324.91622 * 16 15 13 18 18 C 1.38116 * 119.92871 * 180.02562 * 17 16 15 19 19 C 1.38283 * 120.06909 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.92829 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.47038 * 90.00550 * 20 19 18 22 22 C 1.34778 * 120.00218 * 179.97438 * 21 20 19 23 23 O 1.21511 * 119.99698 * 359.97438 * 22 21 20 24 24 O 1.34633 * 120.00150 * 179.97438 * 22 21 20 25 25 C 1.38278 * 120.13924 * 0.23902 * 19 18 17 26 26 C 1.38115 * 120.07031 * 359.47911 * 25 19 18 27 27 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47157 * 300.00029 * 1 2 3 29 29 H 1.09004 * 109.47503 * 60.00048 * 1 2 3 30 30 H 1.09002 * 109.47157 * 239.99971 * 2 1 3 31 31 H 1.08999 * 109.47077 * 119.99816 * 2 1 3 32 32 H 1.09001 * 109.47414 * 29.99671 * 4 3 2 33 33 H 1.08997 * 109.47290 * 149.99878 * 4 3 2 34 34 H 0.97002 * 120.00482 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00198 * 4.59633 * 15 13 3 36 36 H 1.08000 * 120.04233 * 359.97438 * 17 16 15 37 37 H 1.07999 * 119.96641 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47332 * 210.00141 * 20 19 18 39 39 H 1.08992 * 109.47554 * 330.00373 * 20 19 18 40 40 H 0.97000 * 119.99599 * 359.97438 * 21 20 19 41 41 H 0.96697 * 117.00032 * 180.02562 * 24 22 21 42 42 H 1.07997 * 119.96305 * 179.72346 * 25 19 18 43 43 H 1.08003 * 120.03571 * 180.25554 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1248 -3.6187 9 14 5.9131 2.0955 -3.4175 10 1 6.6004 1.2396 -2.4176 11 1 5.9200 1.4163 -4.7381 12 1 6.6209 3.3966 -3.5264 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1628 1.1671 15 7 2.0178 1.3815 2.3344 16 6 2.1584 2.0704 3.5444 17 6 3.1401 3.0430 3.6813 18 6 3.2767 3.7207 4.8769 19 6 2.4375 3.4314 5.9372 20 6 2.5897 4.1724 7.2405 21 7 1.7496 5.3724 7.2209 22 6 1.7244 6.1950 8.2883 23 8 2.3982 5.9409 9.2671 24 8 0.9527 7.2981 8.2701 25 6 1.4625 2.4596 5.8058 26 6 1.3170 1.7824 4.6109 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0954 3.1410 -1.1384 34 1 3.6748 3.5153 -4.4446 35 1 1.7583 0.4469 2.3358 36 1 3.7967 3.2686 2.8540 37 1 4.0397 4.4775 4.9839 38 1 2.2823 3.5271 8.0635 39 1 3.6322 4.4609 7.3749 40 1 1.2114 5.5750 6.4397 41 1 0.9679 7.8575 9.0587 42 1 0.8116 2.2328 6.6372 43 1 0.5526 1.0264 4.5076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:00 Heat of formation + Delta-G solvation = -109.841991 kcal Electronic energy + Delta-G solvation = -26234.640749 eV Core-core repulsion = 22278.961528 eV Total energy + Delta-G solvation = -3955.679221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75521 -41.23952 -39.93445 -37.44598 -37.02285 -36.41897 -35.37458 -34.67728 -31.89271 -31.62946 -31.42099 -29.01770 -26.90858 -24.99928 -24.33453 -23.85666 -22.99288 -22.19187 -20.80302 -20.01496 -19.36967 -18.59855 -18.28402 -18.25287 -17.10713 -16.98855 -16.70759 -16.48346 -16.10795 -15.76591 -15.51085 -15.21974 -14.74884 -14.67262 -14.47818 -14.36972 -14.29251 -13.89518 -13.63918 -13.58016 -13.27851 -13.07524 -12.72828 -12.62070 -12.53031 -12.50019 -12.21427 -12.12979 -11.93980 -11.86691 -11.71126 -11.31518 -10.88269 -10.64683 -10.28877 -9.84185 -9.58224 -8.99440 -8.21930 -6.36640 0.17123 0.49689 1.35865 1.38281 1.49388 1.57449 1.75204 1.78334 2.18620 2.38818 2.89623 3.00508 3.08305 3.65927 3.87304 3.91930 4.04959 4.10325 4.29589 4.37166 4.46702 4.51293 4.61032 4.73561 4.79455 4.86060 4.95850 5.01176 5.11562 5.20177 5.20667 5.29107 5.35961 5.43127 5.56292 5.60574 5.64550 5.80954 5.83439 6.06187 6.09247 6.11113 6.40117 6.72588 7.05833 7.30591 7.43565 7.63547 8.84609 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002546 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.750653 B =10995.099620 C =11909.148472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.613 5.613 4 C 0.278 3.722 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.694 3.306 14 O -0.619 6.619 15 N -0.677 5.677 16 C 0.166 3.834 17 C -0.152 4.152 18 C -0.080 4.080 19 C -0.132 4.132 20 C 0.189 3.811 21 N -0.697 5.697 22 C 0.663 3.337 23 O -0.619 6.619 24 O -0.523 6.523 25 C -0.066 4.066 26 C -0.145 4.145 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.028 0.972 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.419 0.581 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.416 0.584 41 H 0.445 0.555 42 H 0.161 0.839 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 -4.593 21.583 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.157 3.843 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.396 3.604 14 O -0.499 6.499 15 N -0.328 5.328 16 C 0.070 3.930 17 C -0.173 4.173 18 C -0.099 4.099 19 C -0.133 4.133 20 C 0.068 3.932 21 N -0.358 5.358 22 C 0.416 3.584 23 O -0.512 6.512 24 O -0.335 6.335 25 C -0.085 4.085 26 C -0.165 4.165 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.259 0.741 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.252 0.748 41 H 0.309 0.691 42 H 0.178 0.822 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.592 -4.040 21.431 23.093 hybrid contribution 0.776 0.375 -0.978 1.304 sum -6.816 -3.665 20.454 21.869 Atomic orbital electron populations 1.22164 0.94344 1.03642 1.01758 1.21719 0.95455 0.81314 1.03801 1.47496 1.67271 1.15186 1.04746 1.18645 0.95244 0.91364 0.79073 1.21729 0.97927 1.31827 1.06359 0.93053 1.25814 1.02206 0.94545 0.96469 1.70047 1.37598 1.34290 1.14823 0.85397 0.79230 0.77945 0.78388 1.19283 1.19386 1.20877 1.16123 0.78797 0.84322 0.81203 1.90858 1.53343 1.19276 1.86432 1.42662 1.72752 1.14816 1.02524 1.17954 0.94764 0.94895 0.85409 1.21282 0.98767 0.99056 0.98214 1.21028 0.99069 0.98325 0.91456 1.19678 0.98922 0.99866 0.94837 1.20111 0.94828 0.83623 0.94665 1.44797 1.49153 1.24548 1.17255 1.17891 0.78001 0.79725 0.82826 1.91037 1.48224 1.76650 1.35277 1.84186 1.64034 1.35230 1.50043 1.21151 0.96440 0.93667 0.97266 1.21137 0.99182 1.03749 0.92444 0.88310 0.92418 0.94093 0.90313 0.88921 0.95453 0.98382 0.92407 0.74069 0.87817 0.85253 0.88989 0.90644 0.74811 0.69138 0.82169 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.86 5.93 86.38 0.51 3.37 16 3 N -0.61 -25.50 2.46 -844.21 -2.07 -27.57 16 4 C 0.28 14.86 5.16 85.63 0.44 15.30 16 5 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.83 13.29 21.44 0.28 -55.55 16 9 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 C 0.69 29.07 8.12 179.06 1.45 30.52 16 14 O -0.62 -32.24 13.36 -3.97 -0.05 -32.29 16 15 N -0.68 -20.08 5.22 -317.19 -1.65 -21.74 16 16 C 0.17 4.59 6.30 38.14 0.24 4.83 16 17 C -0.15 -4.83 8.69 22.39 0.19 -4.64 16 18 C -0.08 -1.92 9.69 22.25 0.22 -1.71 16 19 C -0.13 -2.36 5.25 -19.85 -0.10 -2.46 16 20 C 0.19 3.00 5.80 85.63 0.50 3.49 16 21 N -0.70 -11.45 5.55 -594.62 -3.30 -14.75 16 22 C 0.66 12.77 9.12 129.79 1.18 13.95 16 23 O -0.62 -16.13 17.13 19.81 0.34 -15.79 16 24 O -0.52 -7.11 13.48 -55.43 -0.75 -7.86 16 25 C -0.07 -1.02 9.69 22.25 0.22 -0.80 16 26 C -0.14 -2.68 9.97 22.39 0.22 -2.46 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.09 1.98 6.30 -2.39 -0.02 1.96 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.42 9.06 6.52 -92.71 -0.60 8.46 16 36 H 0.10 4.22 6.22 -2.91 -0.02 4.20 16 37 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 39 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 40 H 0.42 6.10 8.57 -92.71 -0.79 5.30 16 41 H 0.45 2.08 9.11 -74.06 -0.67 1.41 16 42 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -82.37 371.32 0.33 -82.04 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -1.00 Total: 19.84 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 6.51 Total: 26.75 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -6.74 Total: -119.61 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.46 Total: -55.94 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -82.37 0.33 -82.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.800 kcal (2) G-P(sol) polarization free energy of solvation -82.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds