Wall clock time and date at job start Tue Mar 31 2020 13:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99693 * 2 1 4 4 C 1.50698 * 109.46998 * 293.95184 * 3 2 1 5 5 H 1.08002 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00089 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00056 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00158 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47378 * 119.99635 * 8 6 4 11 11 H 1.48500 * 109.46778 * 239.99910 * 8 6 4 12 12 C 1.46897 * 110.99983 * 123.95070 * 2 1 3 13 13 C 1.50697 * 109.47391 * 66.04731 * 12 2 1 14 14 O 1.21283 * 119.99503 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00423 * 179.97438 * 13 12 2 16 16 C 1.46503 * 120.00196 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47021 * 179.97438 * 16 15 13 18 18 C 1.38272 * 119.92957 * 269.72380 * 17 16 15 19 19 C 1.38116 * 120.06931 * 179.76730 * 18 17 16 20 20 C 1.38872 * 119.92591 * 0.53161 * 19 18 17 21 21 N 1.39953 * 120.06667 * 179.69891 * 20 19 18 22 22 C 1.34781 * 120.00068 * 213.28479 * 21 20 19 23 23 O 1.21516 * 119.99513 * 5.32029 * 22 21 20 24 24 O 1.34647 * 120.00184 * 185.31795 * 22 21 20 25 25 C 1.38862 * 119.86230 * 359.72442 * 20 19 18 26 26 C 1.38115 * 119.92739 * 359.97438 * 25 20 19 27 27 H 1.08994 * 109.47221 * 296.04488 * 1 2 3 28 28 H 1.08999 * 109.47018 * 56.04999 * 1 2 3 29 29 H 1.09003 * 109.46728 * 176.04680 * 1 2 3 30 30 H 1.08998 * 109.47568 * 53.95031 * 3 2 1 31 31 H 1.08998 * 109.47012 * 173.95288 * 3 2 1 32 32 H 0.96998 * 120.00059 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47069 * 306.04863 * 12 2 1 34 34 H 1.09003 * 109.46957 * 186.05200 * 12 2 1 35 35 H 0.97001 * 119.99906 * 359.97438 * 15 13 12 36 36 H 1.09003 * 109.46707 * 59.99701 * 16 15 13 37 37 H 1.08995 * 109.46834 * 300.00039 * 16 15 13 38 38 H 1.07998 * 119.96963 * 0.02562 * 18 17 16 39 39 H 1.08006 * 120.04071 * 180.23491 * 19 18 17 40 40 H 0.97000 * 120.00152 * 33.28897 * 21 20 19 41 41 H 0.96689 * 116.99779 * 180.02562 * 24 22 21 42 42 H 1.08000 * 120.03512 * 179.97438 * 25 20 19 43 43 H 1.08004 * 119.96667 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 2.7127 4.0016 -0.6155 8 14 1.5826 4.1869 -3.1382 9 1 0.8145 3.2445 -3.9910 10 1 0.7559 5.3884 -2.8588 11 1 2.8240 4.5934 -3.8444 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2203 0.9730 14 8 1.0056 -2.5832 0.0032 15 7 2.0190 -3.1180 1.9029 16 6 1.6710 -4.5320 1.7425 17 6 2.2120 -5.3179 2.9090 18 6 3.4796 -5.8663 2.8429 19 6 3.9802 -6.5830 3.9122 20 6 3.2047 -6.7619 5.0502 21 7 3.7066 -7.4930 6.1329 22 6 2.8730 -8.2325 6.8911 23 8 1.7039 -8.3424 6.5785 24 8 3.3357 -8.8496 7.9948 25 6 1.9300 -6.2144 5.1114 26 6 1.4376 -5.4935 4.0412 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 1.5611 1.9274 0.8308 31 1 3.0797 1.3445 0.1083 32 1 2.9878 4.9175 -0.7778 33 1 1.5611 -0.3871 2.0628 34 1 3.0798 -0.6609 1.1757 35 1 2.5249 -2.8279 2.6780 36 1 2.1053 -4.9104 0.8171 37 1 0.5868 -4.6373 1.7046 38 1 4.0806 -5.7305 1.9559 39 1 4.9719 -7.0079 3.8615 40 1 4.6544 -7.4674 6.3378 41 1 2.7004 -9.3689 8.5063 42 1 1.3243 -6.3522 5.9949 43 1 0.4462 -5.0677 4.0879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830722451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:18 Heat of formation + Delta-G solvation = -79.953133 kcal Electronic energy + Delta-G solvation = -25399.790402 eV Core-core repulsion = 21445.407259 eV Total energy + Delta-G solvation = -3954.383143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34711 -39.86375 -39.14213 -36.94364 -36.11517 -35.61971 -34.21361 -32.47275 -31.37561 -30.84607 -28.35038 -26.95240 -25.91907 -24.04986 -23.52389 -22.92480 -21.31761 -20.78270 -19.92216 -19.67810 -18.13032 -17.51021 -17.03252 -16.64324 -16.16236 -16.08417 -15.65983 -15.15741 -15.04776 -14.57458 -14.20078 -14.12033 -14.01614 -13.83227 -13.62800 -13.55116 -13.24189 -12.61654 -12.34876 -12.25031 -11.90223 -11.79528 -11.67476 -11.35141 -11.16781 -11.00318 -10.83917 -10.80552 -10.64697 -10.48991 -9.94718 -9.46058 -9.33150 -9.09741 -8.92967 -8.56641 -8.41457 -7.19480 -6.00778 -4.01025 0.70970 1.01632 1.70555 2.17565 3.01519 3.16020 3.34188 3.41328 3.47941 3.63982 3.91822 4.43289 4.46388 4.46766 4.58769 4.96071 5.00796 5.03587 5.10639 5.20417 5.35701 5.42071 5.63628 5.66771 5.78740 5.79988 5.82748 5.85705 5.88661 6.08318 6.27369 6.34853 6.43692 6.52795 6.57546 6.67665 6.95768 7.26095 7.33309 7.63372 7.70857 7.84855 8.08533 8.21853 8.52453 8.61287 9.07554 9.63056 11.10347 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.001761 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.783494 B =15894.653150 C =16083.400575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.523 5.523 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.038 3.962 13 C 0.515 3.485 14 O -0.518 6.518 15 N -0.737 5.737 16 C 0.163 3.837 17 C -0.114 4.114 18 C -0.078 4.078 19 C -0.141 4.141 20 C 0.159 3.841 21 N -0.649 5.649 22 C 0.664 3.336 23 O -0.557 6.557 24 O -0.523 6.523 25 C -0.121 4.121 26 C -0.079 4.079 27 H 0.004 0.996 28 H 0.074 0.926 29 H 0.064 0.936 30 H -0.008 1.008 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.419 0.581 41 H 0.434 0.566 42 H 0.137 0.863 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -25.397 18.308 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.084 0.916 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.094 4.094 13 C 0.301 3.699 14 O -0.392 6.392 15 N -0.392 5.392 16 C 0.040 3.960 17 C -0.115 4.115 18 C -0.097 4.097 19 C -0.162 4.162 20 C 0.066 3.934 21 N -0.301 5.301 22 C 0.417 3.583 23 O -0.445 6.445 24 O -0.333 6.333 25 C -0.141 4.141 26 C -0.098 4.098 27 H 0.023 0.977 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.010 0.990 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.255 0.745 41 H 0.295 0.705 42 H 0.154 0.846 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.520 -25.597 16.912 30.880 hybrid contribution 0.004 0.679 0.932 1.153 sum 3.524 -24.918 17.844 30.850 Atomic orbital electron populations 1.22364 0.88063 1.01170 0.99926 1.61854 1.07833 1.17234 1.37889 1.19798 0.95362 0.81175 0.96946 1.21211 1.34538 0.96842 1.01641 0.91606 1.24989 0.95334 0.97312 0.97082 1.69965 1.38633 1.11413 1.34056 0.86418 0.78140 0.79244 0.83509 1.19576 1.21148 1.21038 1.21946 1.01980 0.90315 0.95200 1.21028 0.78689 0.88258 0.81881 1.90654 1.38432 1.80501 1.29621 1.46142 1.59474 1.07081 1.26544 1.20087 1.00270 0.80342 0.95292 1.19977 0.94967 1.00462 0.96101 1.20931 0.94826 0.95896 0.98070 1.20831 1.00887 1.02749 0.91694 1.17493 0.94927 0.94460 0.86492 1.41891 1.11698 1.47475 1.29051 1.17718 0.83574 0.77687 0.79322 1.91114 1.16215 1.64836 1.72357 1.84164 1.47888 1.64144 1.37134 1.21151 0.95160 0.97477 1.00357 1.21022 0.99853 0.96883 0.92032 0.97739 0.90765 0.91718 0.98992 0.95155 0.93028 0.93122 0.88506 0.76738 0.90671 0.90801 0.84894 0.85203 0.74458 0.70501 0.84564 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.03 60.07 0.54 1.26 16 2 N -0.52 -11.92 4.49 -245.82 -1.10 -13.02 16 3 C 0.19 5.06 4.72 -4.98 -0.02 5.03 16 4 C -0.50 -14.48 8.46 -34.44 -0.29 -14.78 16 5 H 0.07 1.91 7.12 -52.49 -0.37 1.54 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16 13 C 0.51 8.41 7.55 -10.99 -0.08 8.33 16 14 O -0.52 -10.48 14.31 5.56 0.08 -10.40 16 15 N -0.74 -8.59 5.55 -61.47 -0.34 -8.93 16 16 C 0.16 1.71 5.80 -5.19 -0.03 1.68 16 17 C -0.11 -0.98 5.25 -104.59 -0.55 -1.53 16 18 C -0.08 -0.59 9.69 -39.61 -0.38 -0.97 16 19 C -0.14 -0.94 9.96 -39.39 -0.39 -1.33 16 20 C 0.16 1.24 6.28 -83.68 -0.53 0.71 16 21 N -0.65 -3.92 5.35 -14.26 -0.08 -4.00 16 22 C 0.66 4.90 8.86 54.06 0.48 5.38 16 23 O -0.56 -6.07 14.82 -19.28 -0.29 -6.35 16 24 O -0.52 -2.19 13.48 -40.34 -0.54 -2.73 16 25 C -0.12 -1.09 8.66 -39.40 -0.34 -1.43 16 26 C -0.08 -0.68 9.69 -39.61 -0.38 -1.07 16 27 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 28 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 29 H 0.06 1.34 5.88 -51.93 -0.31 1.04 16 30 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 31 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.10 1.58 7.93 -51.93 -0.41 1.17 16 35 H 0.40 3.69 8.46 -40.82 -0.35 3.35 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.42 1.33 8.92 -40.82 -0.36 0.96 16 41 H 0.43 0.01 9.11 45.56 0.42 0.42 16 42 H 0.14 1.32 6.41 -52.49 -0.34 0.99 16 43 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -37.07 368.56 -8.10 -45.17 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.99 Total: 0.46 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.11 Total: 3.36 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.78 Total: -52.03 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.75 Total: -19.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.07 -8.10 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830722451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.784 kcal (2) G-P(sol) polarization free energy of solvation -37.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds