Wall clock time and date at job start Tue Mar 31 2020 13:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99693 * 2 1 4 4 C 1.50698 * 109.46998 * 293.95184 * 3 2 1 5 5 H 1.08002 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00089 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00056 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00158 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47378 * 119.99635 * 8 6 4 11 11 H 1.48500 * 109.46778 * 239.99910 * 8 6 4 12 12 C 1.46897 * 110.99983 * 123.95070 * 2 1 3 13 13 C 1.50697 * 109.47391 * 66.04731 * 12 2 1 14 14 O 1.21283 * 119.99503 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00423 * 179.97438 * 13 12 2 16 16 C 1.46503 * 120.00196 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47021 * 179.97438 * 16 15 13 18 18 C 1.38272 * 119.92957 * 269.72380 * 17 16 15 19 19 C 1.38116 * 120.06931 * 179.76730 * 18 17 16 20 20 C 1.38872 * 119.92591 * 0.53161 * 19 18 17 21 21 N 1.39953 * 120.06667 * 179.69891 * 20 19 18 22 22 C 1.34781 * 120.00068 * 213.28479 * 21 20 19 23 23 O 1.21516 * 119.99513 * 5.32029 * 22 21 20 24 24 O 1.34647 * 120.00184 * 185.31795 * 22 21 20 25 25 C 1.38862 * 119.86230 * 359.72442 * 20 19 18 26 26 C 1.38115 * 119.92739 * 359.97438 * 25 20 19 27 27 H 1.08994 * 109.47221 * 296.04488 * 1 2 3 28 28 H 1.08999 * 109.47018 * 56.04999 * 1 2 3 29 29 H 1.09003 * 109.46728 * 176.04680 * 1 2 3 30 30 H 1.08998 * 109.47568 * 53.95031 * 3 2 1 31 31 H 1.08998 * 109.47012 * 173.95288 * 3 2 1 32 32 H 0.96998 * 120.00059 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47069 * 306.04863 * 12 2 1 34 34 H 1.09003 * 109.46957 * 186.05200 * 12 2 1 35 35 H 0.97001 * 119.99906 * 359.97438 * 15 13 12 36 36 H 1.09003 * 109.46707 * 59.99701 * 16 15 13 37 37 H 1.08995 * 109.46834 * 300.00039 * 16 15 13 38 38 H 1.07998 * 119.96963 * 0.02562 * 18 17 16 39 39 H 1.08006 * 120.04071 * 180.23491 * 19 18 17 40 40 H 0.97000 * 120.00152 * 33.28897 * 21 20 19 41 41 H 0.96689 * 116.99779 * 180.02562 * 24 22 21 42 42 H 1.08000 * 120.03512 * 179.97438 * 25 20 19 43 43 H 1.08004 * 119.96667 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 2.7127 4.0016 -0.6155 8 14 1.5826 4.1869 -3.1382 9 1 0.8145 3.2445 -3.9910 10 1 0.7559 5.3884 -2.8588 11 1 2.8240 4.5934 -3.8444 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2203 0.9730 14 8 1.0056 -2.5832 0.0032 15 7 2.0190 -3.1180 1.9029 16 6 1.6710 -4.5320 1.7425 17 6 2.2120 -5.3179 2.9090 18 6 3.4796 -5.8663 2.8429 19 6 3.9802 -6.5830 3.9122 20 6 3.2047 -6.7619 5.0502 21 7 3.7066 -7.4930 6.1329 22 6 2.8730 -8.2325 6.8911 23 8 1.7039 -8.3424 6.5785 24 8 3.3357 -8.8496 7.9948 25 6 1.9300 -6.2144 5.1114 26 6 1.4376 -5.4935 4.0412 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 1.5611 1.9274 0.8308 31 1 3.0797 1.3445 0.1083 32 1 2.9878 4.9175 -0.7778 33 1 1.5611 -0.3871 2.0628 34 1 3.0798 -0.6609 1.1757 35 1 2.5249 -2.8279 2.6780 36 1 2.1053 -4.9104 0.8171 37 1 0.5868 -4.6373 1.7046 38 1 4.0806 -5.7305 1.9559 39 1 4.9719 -7.0079 3.8615 40 1 4.6544 -7.4674 6.3378 41 1 2.7004 -9.3689 8.5063 42 1 1.3243 -6.3522 5.9949 43 1 0.4462 -5.0677 4.0879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830722451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:17 Heat of formation + Delta-G solvation = -110.362858 kcal Electronic energy + Delta-G solvation = -25401.109067 eV Core-core repulsion = 21445.407259 eV Total energy + Delta-G solvation = -3955.701808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90432 -40.89849 -40.02806 -37.83939 -37.32238 -36.47727 -35.20506 -34.60752 -31.97427 -31.72580 -29.91564 -28.73186 -26.99520 -25.72838 -24.23692 -23.57845 -22.55799 -21.89045 -21.29813 -20.18408 -18.73173 -18.66063 -18.07810 -17.82656 -17.21226 -17.18525 -16.78745 -16.51843 -16.12549 -15.87823 -15.62386 -15.23291 -15.10308 -14.67633 -14.64396 -14.44372 -14.20041 -13.93873 -13.69712 -13.57390 -13.22369 -12.80789 -12.74672 -12.60990 -12.58781 -12.54551 -12.32575 -12.27348 -11.95745 -11.81258 -11.46778 -11.39349 -10.68549 -10.59754 -10.05495 -9.91895 -9.21787 -8.98328 -8.19755 -6.28458 0.07383 0.41617 1.26061 1.41940 1.42735 1.56782 1.60646 1.71039 2.19572 2.43394 2.84984 3.12874 3.43824 3.51181 3.70593 3.88059 3.99348 4.02538 4.27226 4.36616 4.40942 4.45991 4.52099 4.60480 4.70842 4.72243 4.78463 5.06695 5.12861 5.15362 5.17926 5.25881 5.29930 5.35761 5.48675 5.61535 5.66243 5.70707 5.97125 6.03890 6.23567 6.30426 6.47874 6.71620 6.86625 7.26856 7.35155 7.40854 8.91240 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.001761 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.783494 B =15894.653150 C =16083.400575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.034 3.966 13 C 0.521 3.479 14 O -0.562 6.562 15 N -0.714 5.714 16 C 0.167 3.833 17 C -0.119 4.119 18 C -0.077 4.077 19 C -0.134 4.134 20 C 0.156 3.844 21 N -0.639 5.639 22 C 0.665 3.335 23 O -0.597 6.597 24 O -0.511 6.511 25 C -0.137 4.137 26 C -0.083 4.083 27 H 0.013 0.987 28 H 0.053 0.947 29 H 0.073 0.927 30 H -0.028 1.028 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.433 0.567 41 H 0.451 0.549 42 H 0.124 0.876 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 -26.391 18.773 32.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.202 1.202 12 C -0.097 4.097 13 C 0.308 3.692 14 O -0.439 6.439 15 N -0.368 5.368 16 C 0.044 3.956 17 C -0.120 4.120 18 C -0.096 4.096 19 C -0.154 4.154 20 C 0.062 3.938 21 N -0.293 5.293 22 C 0.418 3.582 23 O -0.488 6.488 24 O -0.324 6.324 25 C -0.157 4.157 26 C -0.102 4.102 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.092 0.908 30 H -0.011 1.011 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.177 0.823 40 H 0.273 0.727 41 H 0.315 0.685 42 H 0.142 0.858 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.766 -26.635 17.459 32.202 hybrid contribution -0.314 0.872 0.933 1.315 sum 4.452 -25.763 18.392 31.966 Atomic orbital electron populations 1.22246 0.87563 1.01347 0.99430 1.61698 1.08457 1.15450 1.40970 1.19457 0.94194 0.82928 0.95260 1.21483 1.34866 0.97580 1.02485 0.92548 1.25841 0.95019 0.97878 1.00625 1.70061 1.39255 1.11908 1.35894 0.85356 0.78127 0.78126 0.79132 1.19327 1.20209 1.20172 1.22037 1.02738 0.90769 0.94182 1.20694 0.78403 0.88128 0.82012 1.90641 1.40729 1.80993 1.31583 1.45914 1.58029 1.07189 1.25670 1.20093 1.00005 0.79350 0.96118 1.19778 0.95694 1.01202 0.95343 1.21139 0.94331 0.95314 0.98827 1.21092 1.01835 1.01829 0.90609 1.17645 0.94652 0.94148 0.87319 1.41819 1.12350 1.46697 1.28399 1.17850 0.83074 0.77536 0.79711 1.91096 1.18000 1.66290 1.73443 1.84156 1.48238 1.63920 1.36087 1.21139 0.95966 0.98454 1.00170 1.21048 1.00067 0.97038 0.92096 0.96850 0.92820 0.90826 1.01069 0.96709 0.92599 0.91152 0.87209 0.75006 0.90910 0.91486 0.83493 0.82296 0.72683 0.68503 0.85806 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.84 9.03 127.69 1.15 2.99 16 2 N -0.54 -24.79 4.49 -931.65 -4.18 -28.98 16 3 C 0.21 11.12 4.72 85.56 0.40 11.53 16 4 C -0.53 -30.67 8.46 25.60 0.22 -30.46 16 5 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 6 C 0.00 0.26 5.46 84.66 0.46 0.72 16 7 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 8 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.03 1.17 5.45 85.56 0.47 1.64 16 13 C 0.52 16.56 7.55 87.66 0.66 17.23 16 14 O -0.56 -22.60 14.31 -3.04 -0.04 -22.65 16 15 N -0.71 -15.58 5.55 -466.79 -2.59 -18.17 16 16 C 0.17 3.31 5.80 85.63 0.50 3.81 16 17 C -0.12 -1.88 5.25 -19.85 -0.10 -1.99 16 18 C -0.08 -0.97 9.69 22.25 0.22 -0.76 16 19 C -0.13 -1.41 9.96 22.39 0.22 -1.19 16 20 C 0.16 2.16 6.28 38.15 0.24 2.40 16 21 N -0.64 -6.53 5.35 -429.44 -2.30 -8.83 16 22 C 0.66 9.01 8.86 129.79 1.15 10.16 16 23 O -0.60 -12.86 14.82 19.79 0.29 -12.57 16 24 O -0.51 -3.36 13.48 -55.57 -0.75 -4.11 16 25 C -0.14 -2.39 8.66 22.39 0.19 -2.20 16 26 C -0.08 -1.39 9.69 22.25 0.22 -1.18 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 2.50 6.76 -2.39 -0.02 2.49 16 29 H 0.07 3.07 5.88 -2.39 -0.01 3.05 16 30 H -0.03 -1.61 8.12 -2.39 -0.02 -1.63 16 31 H 0.01 0.83 7.93 -2.39 -0.02 0.81 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 34 H 0.11 3.46 7.93 -2.39 -0.02 3.45 16 35 H 0.41 6.78 8.46 -92.71 -0.78 6.00 16 36 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 37 H 0.07 1.45 8.08 -2.39 -0.02 1.44 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.43 1.64 8.92 -92.71 -0.83 0.81 16 41 H 0.45 -0.71 9.11 -74.06 -0.67 -1.39 16 42 H 0.12 2.46 6.41 -2.91 -0.02 2.44 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -80.25 368.56 -2.48 -82.73 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -1.21 Total: 8.05 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.99 Total: 12.71 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -8.79 Total: -111.33 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.50 Total: -39.33 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -80.25 -2.48 -82.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830722451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.638 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds